Wall clock time and date at job start Tue Mar 31 2020 06:24:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46503 * 109.47019 * 2 1 4 4 C 1.37093 * 119.99904 * 276.67544 * 3 2 1 5 5 H 1.08006 * 119.99675 * 182.50493 * 4 3 2 6 6 C 1.38950 * 120.00140 * 2.50256 * 4 3 2 7 7 N 1.31407 * 119.99704 * 8.09454 * 6 4 3 8 8 Si 1.86800 * 120.00152 * 188.09376 * 6 4 3 9 9 H 1.48507 * 109.47061 * 0.02562 * 8 6 4 10 10 H 1.48494 * 109.47124 * 119.99867 * 8 6 4 11 11 H 1.48500 * 109.47213 * 240.00117 * 8 6 4 12 12 C 1.34779 * 119.99910 * 96.67363 * 3 2 1 13 13 O 1.21291 * 119.99991 * 176.44115 * 12 3 2 14 14 C 1.50701 * 120.00252 * 356.44350 * 12 3 2 15 15 C 1.50697 * 112.88332 * 298.27648 * 14 12 3 16 16 C 1.38227 * 120.00490 * 123.19352 * 15 14 12 17 17 C 1.38239 * 120.00226 * 179.74068 * 16 15 14 18 18 C 1.38241 * 119.99641 * 0.55383 * 17 16 15 19 19 C 1.38230 * 119.99887 * 359.69862 * 18 17 16 20 20 C 1.38236 * 119.99362 * 303.46579 * 15 14 12 21 21 C 1.53837 * 113.65731 * 166.93721 * 14 12 3 22 22 C 1.51876 * 86.65245 * 270.26343 * 21 14 12 23 23 O 1.20764 * 135.78537 * 154.85052 * 22 21 14 24 24 C 1.51579 * 88.43253 * 334.84808 * 22 21 14 25 25 H 1.09001 * 109.46540 * 65.16985 * 1 2 3 26 26 H 1.08993 * 109.46946 * 185.16758 * 1 2 3 27 27 H 1.08995 * 109.47211 * 305.16774 * 1 2 3 28 28 H 1.08995 * 109.47380 * 239.99734 * 2 1 3 29 29 H 1.09002 * 109.46927 * 119.99565 * 2 1 3 30 30 H 0.97003 * 120.00009 * 179.97438 * 7 6 4 31 31 H 1.08004 * 120.00134 * 359.97438 * 16 15 14 32 32 H 1.08002 * 120.00073 * 180.27515 * 17 16 15 33 33 H 1.08001 * 119.99420 * 179.71986 * 18 17 16 34 34 H 1.08004 * 119.99542 * 179.97438 * 19 18 17 35 35 H 1.07993 * 120.00542 * 0.02562 * 20 15 14 36 36 H 1.08996 * 113.66586 * 24.78169 * 21 14 12 37 37 H 1.09002 * 113.66409 * 155.84740 * 21 14 12 38 38 H 1.09008 * 113.66359 * 270.68484 * 24 22 21 39 39 H 1.08997 * 113.74770 * 139.63012 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.1167 2.0735 -1.1792 5 1 2.5147 3.0776 -1.1844 6 6 1.7045 1.4834 -2.3677 7 7 1.0757 0.3298 -2.3449 8 14 2.0441 2.3301 -3.9979 9 1 2.7612 3.6071 -3.7524 10 1 2.8824 1.4478 -4.8487 11 1 0.7591 2.6082 -4.6883 12 6 2.3709 1.9714 1.1593 13 8 2.8358 3.0916 1.1528 14 6 2.1875 1.2393 2.4638 15 6 0.7464 0.9051 2.7506 16 6 0.3715 -0.4072 2.9695 17 6 -0.9496 -0.7132 3.2379 18 6 -1.8978 0.2920 3.2761 19 6 -1.5238 1.6038 3.0520 20 6 -0.2017 1.9104 2.7892 21 6 2.9164 1.8967 3.6483 22 6 4.1082 1.0299 3.2809 23 8 5.3046 1.0944 3.4315 24 6 3.1449 0.0485 2.6432 25 1 -0.3632 0.4316 -0.9327 26 1 -0.3633 -1.0234 0.0926 27 1 -0.3633 0.5919 0.8400 28 1 1.8934 -0.5138 -0.8899 29 1 1.8934 -0.5138 0.8900 30 1 0.7875 -0.0820 -3.1746 31 1 1.1114 -1.1932 2.9345 32 1 -1.2417 -1.7381 3.4133 33 1 -2.9307 0.0524 3.4813 34 1 -2.2647 2.3891 3.0815 35 1 0.0903 2.9351 2.6135 36 1 3.0924 2.9642 3.5158 37 1 2.4819 1.6547 4.6182 38 1 2.7743 -0.7109 3.3318 39 1 3.5033 -0.3703 1.7029 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000362619346.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:51 Heat of formation + Delta-G solvation = 14.761887 kcal Electronic energy + Delta-G solvation = -23974.115650 eV Core-core repulsion = 20656.222770 eV Total energy + Delta-G solvation = -3317.892880 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 287.131 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.96812 -38.61690 -37.94976 -35.84604 -34.99364 -31.73040 -30.72081 -30.50240 -29.25393 -26.16835 -25.85192 -23.93117 -22.34266 -21.92782 -21.25607 -19.59956 -18.08031 -17.15141 -16.85960 -15.94386 -15.40755 -15.38661 -14.95519 -14.51584 -14.31896 -14.09920 -14.06183 -13.53946 -13.17980 -13.14760 -12.76323 -12.37017 -12.30082 -11.94004 -11.66593 -11.45247 -11.18099 -11.13962 -10.96808 -10.69988 -10.59558 -10.51338 -10.30391 -10.08441 -9.87849 -9.11659 -8.87872 -8.66813 -8.59806 -8.18340 -7.78854 -6.23724 -3.85913 1.61082 1.68769 2.17563 3.09337 3.22387 3.29383 3.65638 4.01567 4.03744 4.14221 4.53740 4.80155 4.96602 4.98446 5.16736 5.21361 5.22323 5.37483 5.48078 5.58237 5.65502 5.74638 5.87564 5.90049 6.11933 6.19373 6.25460 6.29702 6.33051 6.70790 6.76649 6.80065 6.85515 6.89624 6.95951 7.25342 7.39211 7.60509 7.74426 7.85398 8.03595 8.47854 9.11975 9.39620 9.90485 10.61291 Molecular weight = 287.13amu Principal moments of inertia in cm(-1) A = 0.014298 B = 0.007855 C = 0.005945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1957.902065 B = 3563.965613 C = 4708.553606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.111 3.889 3 N -0.426 5.426 4 C -0.293 4.293 5 H 0.105 0.895 6 C 0.023 3.977 7 N -0.871 5.871 8 Si 0.929 3.071 9 H -0.269 1.269 10 H -0.281 1.281 11 H -0.282 1.282 12 C 0.453 3.547 13 O -0.591 6.591 14 C -0.042 4.042 15 C -0.041 4.041 16 C -0.111 4.111 17 C -0.118 4.118 18 C -0.126 4.126 19 C -0.118 4.118 20 C -0.100 4.100 21 C -0.166 4.166 22 C 0.370 3.630 23 O -0.432 6.432 24 C -0.188 4.188 25 H 0.086 0.914 26 H 0.027 0.973 27 H 0.036 0.964 28 H 0.116 0.884 29 H 0.033 0.967 30 H 0.264 0.736 31 H 0.123 0.877 32 H 0.118 0.882 33 H 0.115 0.885 34 H 0.118 0.882 35 H 0.121 0.879 36 H 0.109 0.891 37 H 0.117 0.883 38 H 0.124 0.876 39 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.490 -4.925 9.713 12.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.012 4.012 3 N -0.142 5.142 4 C -0.421 4.421 5 H 0.122 0.878 6 C -0.178 4.178 7 N -0.513 5.513 8 Si 0.756 3.244 9 H -0.193 1.193 10 H -0.206 1.206 11 H -0.208 1.208 12 C 0.240 3.760 13 O -0.477 6.477 14 C -0.045 4.045 15 C -0.041 4.041 16 C -0.129 4.129 17 C -0.136 4.136 18 C -0.144 4.144 19 C -0.136 4.136 20 C -0.118 4.118 21 C -0.204 4.204 22 C 0.244 3.756 23 O -0.303 6.303 24 C -0.226 4.226 25 H 0.104 0.896 26 H 0.046 0.954 27 H 0.055 0.945 28 H 0.133 0.867 29 H 0.051 0.949 30 H 0.075 0.925 31 H 0.140 0.860 32 H 0.136 0.864 33 H 0.133 0.867 34 H 0.136 0.864 35 H 0.139 0.861 36 H 0.127 0.873 37 H 0.135 0.865 38 H 0.142 0.858 39 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -4.696 -4.477 9.578 11.569 hybrid contribution -0.282 0.143 -1.038 1.085 sum -4.978 -4.334 8.541 10.794 Atomic orbital electron populations 1.22327 0.96381 0.98853 1.02885 1.22015 0.95253 0.82921 1.01022 1.43758 1.53336 1.12084 1.04997 1.19896 1.38982 1.00168 0.83055 0.87769 1.25272 0.96179 0.96587 0.99723 1.70140 1.37255 1.16979 1.26944 0.85795 0.78137 0.79326 0.81114 1.19311 1.20649 1.20765 1.18937 0.86380 0.87070 0.83600 1.90527 1.50890 1.20099 1.86153 1.20360 0.91659 0.96624 0.95879 1.19173 0.93070 0.93499 0.98357 1.20994 0.96326 0.95563 1.00013 1.20996 0.93084 0.98883 1.00649 1.21043 0.99050 0.93121 1.01167 1.21049 0.95829 0.96516 1.00177 1.20976 0.92741 0.99488 0.98630 1.23971 0.94654 1.03561 0.98255 1.25540 0.88350 0.87945 0.73719 1.90373 1.15641 1.75611 1.48711 1.24358 0.96038 0.98672 1.03538 0.89582 0.95360 0.94506 0.86654 0.94898 0.92484 0.85968 0.86426 0.86652 0.86443 0.86079 0.87268 0.86505 0.85840 0.87952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.06 8.35 37.16 0.31 -2.75 16 2 C 0.11 2.40 4.67 -4.04 -0.02 2.38 16 3 N -0.43 -10.47 2.64 -114.81 -0.30 -10.77 16 4 C -0.29 -7.91 9.53 -14.94 -0.14 -8.05 16 5 H 0.10 2.99 7.18 -52.48 -0.38 2.62 16 6 C 0.02 0.59 5.35 -17.47 -0.09 0.50 16 7 N -0.87 -21.48 7.26 55.50 0.40 -21.08 16 8 Si 0.93 20.34 29.56 -169.99 -5.02 15.32 16 9 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 10 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 11 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 12 C 0.45 10.65 6.05 -10.98 -0.07 10.58 16 13 O -0.59 -15.97 15.49 5.55 0.09 -15.88 16 14 C -0.04 -0.74 0.48 -156.03 -0.08 -0.81 16 15 C -0.04 -0.65 2.61 -104.63 -0.27 -0.92 16 16 C -0.11 -1.52 6.63 -39.58 -0.26 -1.78 16 17 C -0.12 -1.47 9.90 -39.58 -0.39 -1.86 16 18 C -0.13 -1.58 10.03 -39.58 -0.40 -1.97 16 19 C -0.12 -1.63 9.74 -39.58 -0.39 -2.02 16 20 C -0.10 -1.62 8.27 -39.58 -0.33 -1.95 16 21 C -0.17 -2.65 7.06 -26.87 -0.19 -2.84 16 22 C 0.37 6.45 8.87 -28.11 -0.25 6.20 16 23 O -0.43 -8.67 17.99 6.00 0.11 -8.57 16 24 C -0.19 -2.90 5.22 -27.01 -0.14 -3.04 16 25 H 0.09 2.07 6.01 -51.93 -0.31 1.76 16 26 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.04 0.73 3.93 -51.93 -0.20 0.53 16 28 H 0.12 2.77 5.72 -51.93 -0.30 2.47 16 29 H 0.03 0.62 3.38 -51.93 -0.18 0.44 16 30 H 0.26 6.22 8.31 -40.82 -0.34 5.88 16 31 H 0.12 1.46 5.86 -52.48 -0.31 1.15 16 32 H 0.12 1.18 8.06 -52.49 -0.42 0.76 16 33 H 0.12 1.17 8.06 -52.49 -0.42 0.74 16 34 H 0.12 1.40 8.06 -52.48 -0.42 0.97 16 35 H 0.12 2.10 8.05 -52.49 -0.42 1.68 16 36 H 0.11 1.93 7.34 -51.93 -0.38 1.55 16 37 H 0.12 1.44 8.09 -51.93 -0.42 1.02 16 38 H 0.12 1.43 6.29 -51.92 -0.33 1.10 16 39 H 0.10 1.70 6.83 -51.93 -0.35 1.34 16 LS Contribution 306.30 15.07 4.62 4.62 Total: -1.00 -30.32 306.30 -7.22 -37.55 By element: Atomic # 1 Polarization: 11.55 SS G_CDS: -4.40 Total: 7.14 kcal Atomic # 6 Polarization: -5.62 SS G_CDS: -2.70 Total: -8.33 kcal Atomic # 7 Polarization: -31.95 SS G_CDS: 0.10 Total: -31.85 kcal Atomic # 8 Polarization: -24.64 SS G_CDS: 0.19 Total: -24.45 kcal Atomic # 14 Polarization: 20.34 SS G_CDS: -5.02 Total: 15.32 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -30.32 -7.22 -37.55 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362619346.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.308 kcal (2) G-P(sol) polarization free energy of solvation -30.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.546 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds