Wall clock time and date at job start Tue Mar 31 2020 06:24:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46503 * 109.47019 * 2 1 4 4 C 1.37093 * 119.99904 * 276.67544 * 3 2 1 5 5 H 1.08006 * 119.99675 * 182.50493 * 4 3 2 6 6 C 1.38950 * 120.00140 * 2.50256 * 4 3 2 7 7 N 1.31407 * 119.99704 * 8.09454 * 6 4 3 8 8 Si 1.86800 * 120.00152 * 188.09376 * 6 4 3 9 9 H 1.48507 * 109.47061 * 0.02562 * 8 6 4 10 10 H 1.48494 * 109.47124 * 119.99867 * 8 6 4 11 11 H 1.48500 * 109.47213 * 240.00117 * 8 6 4 12 12 C 1.34779 * 119.99910 * 96.67363 * 3 2 1 13 13 O 1.21291 * 119.99991 * 176.44115 * 12 3 2 14 14 C 1.50701 * 120.00252 * 356.44350 * 12 3 2 15 15 C 1.50697 * 112.88332 * 298.27648 * 14 12 3 16 16 C 1.38227 * 120.00490 * 123.19352 * 15 14 12 17 17 C 1.38239 * 120.00226 * 179.74068 * 16 15 14 18 18 C 1.38241 * 119.99641 * 0.55383 * 17 16 15 19 19 C 1.38230 * 119.99887 * 359.69862 * 18 17 16 20 20 C 1.38236 * 119.99362 * 303.46579 * 15 14 12 21 21 C 1.53837 * 113.65731 * 166.93721 * 14 12 3 22 22 C 1.51876 * 86.65245 * 270.26343 * 21 14 12 23 23 O 1.20764 * 135.78537 * 154.85052 * 22 21 14 24 24 C 1.51579 * 88.43253 * 334.84808 * 22 21 14 25 25 H 1.09001 * 109.46540 * 65.16985 * 1 2 3 26 26 H 1.08993 * 109.46946 * 185.16758 * 1 2 3 27 27 H 1.08995 * 109.47211 * 305.16774 * 1 2 3 28 28 H 1.08995 * 109.47380 * 239.99734 * 2 1 3 29 29 H 1.09002 * 109.46927 * 119.99565 * 2 1 3 30 30 H 0.97003 * 120.00009 * 179.97438 * 7 6 4 31 31 H 1.08004 * 120.00134 * 359.97438 * 16 15 14 32 32 H 1.08002 * 120.00073 * 180.27515 * 17 16 15 33 33 H 1.08001 * 119.99420 * 179.71986 * 18 17 16 34 34 H 1.08004 * 119.99542 * 179.97438 * 19 18 17 35 35 H 1.07993 * 120.00542 * 0.02562 * 20 15 14 36 36 H 1.08996 * 113.66586 * 24.78169 * 21 14 12 37 37 H 1.09002 * 113.66409 * 155.84740 * 21 14 12 38 38 H 1.09008 * 113.66359 * 270.68484 * 24 22 21 39 39 H 1.08997 * 113.74770 * 139.63012 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.1167 2.0735 -1.1792 5 1 2.5147 3.0776 -1.1844 6 6 1.7045 1.4834 -2.3677 7 7 1.0757 0.3298 -2.3449 8 14 2.0441 2.3301 -3.9979 9 1 2.7612 3.6071 -3.7524 10 1 2.8824 1.4478 -4.8487 11 1 0.7591 2.6082 -4.6883 12 6 2.3709 1.9714 1.1593 13 8 2.8358 3.0916 1.1528 14 6 2.1875 1.2393 2.4638 15 6 0.7464 0.9051 2.7506 16 6 0.3715 -0.4072 2.9695 17 6 -0.9496 -0.7132 3.2379 18 6 -1.8978 0.2920 3.2761 19 6 -1.5238 1.6038 3.0520 20 6 -0.2017 1.9104 2.7892 21 6 2.9164 1.8967 3.6483 22 6 4.1082 1.0299 3.2809 23 8 5.3046 1.0944 3.4315 24 6 3.1449 0.0485 2.6432 25 1 -0.3632 0.4316 -0.9327 26 1 -0.3633 -1.0234 0.0926 27 1 -0.3633 0.5919 0.8400 28 1 1.8934 -0.5138 -0.8899 29 1 1.8934 -0.5138 0.8900 30 1 0.7875 -0.0820 -3.1746 31 1 1.1114 -1.1932 2.9345 32 1 -1.2417 -1.7381 3.4133 33 1 -2.9307 0.0524 3.4813 34 1 -2.2647 2.3891 3.0815 35 1 0.0903 2.9351 2.6135 36 1 3.0924 2.9642 3.5158 37 1 2.4819 1.6547 4.6182 38 1 2.7743 -0.7109 3.3318 39 1 3.5033 -0.3703 1.7029 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000362619346.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:50 Heat of formation + Delta-G solvation = -2.647535 kcal Electronic energy + Delta-G solvation = -23974.870579 eV Core-core repulsion = 20656.222770 eV Total energy + Delta-G solvation = -3318.647809 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 287.131 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.39382 -39.93013 -39.50628 -37.44716 -36.74841 -33.64373 -31.78289 -31.72795 -30.94119 -27.75284 -27.29845 -25.47564 -23.87995 -23.19773 -22.58856 -21.07775 -19.62567 -18.79228 -18.34542 -17.51337 -17.00265 -16.63605 -16.41166 -16.05443 -15.85251 -15.48127 -15.32587 -15.26689 -14.75529 -14.57564 -14.17088 -13.81875 -13.64290 -13.38288 -13.05969 -12.94800 -12.85634 -12.81211 -12.55052 -12.23865 -12.15087 -11.90534 -11.79683 -11.71970 -11.59035 -10.72084 -10.53876 -10.37106 -9.68878 -9.66629 -9.43551 -8.16710 -5.87542 0.53154 0.63482 0.81453 1.31893 1.39833 1.51721 1.92148 2.24017 2.74960 2.92783 2.95138 3.10297 3.42368 3.64823 3.80106 3.90710 4.14126 4.26100 4.29350 4.37940 4.50026 4.56521 4.65519 4.70872 4.81969 4.86907 4.93186 5.08956 5.15542 5.18449 5.26293 5.28894 5.42028 5.68386 5.72532 5.74809 5.79441 6.06284 6.11109 6.22795 6.37794 6.56225 7.17285 7.51644 8.02985 8.64484 Molecular weight = 287.13amu Principal moments of inertia in cm(-1) A = 0.014298 B = 0.007855 C = 0.005945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1957.902065 B = 3563.965613 C = 4708.553606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.115 3.885 3 N -0.437 5.437 4 C -0.338 4.338 5 H 0.068 0.932 6 C 0.001 3.999 7 N -0.867 5.867 8 Si 0.984 3.016 9 H -0.284 1.284 10 H -0.268 1.268 11 H -0.271 1.271 12 C 0.442 3.558 13 O -0.642 6.642 14 C -0.041 4.041 15 C -0.054 4.054 16 C -0.112 4.112 17 C -0.111 4.111 18 C -0.121 4.121 19 C -0.124 4.124 20 C -0.126 4.126 21 C -0.158 4.158 22 C 0.361 3.639 23 O -0.467 6.467 24 C -0.171 4.171 25 H 0.051 0.949 26 H 0.052 0.948 27 H 0.044 0.956 28 H 0.093 0.907 29 H 0.066 0.934 30 H 0.270 0.730 31 H 0.147 0.853 32 H 0.153 0.847 33 H 0.146 0.854 34 H 0.129 0.871 35 H 0.090 0.910 36 H 0.083 0.917 37 H 0.161 0.839 38 H 0.177 0.823 39 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.495 -8.062 10.800 15.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.007 4.007 3 N -0.152 5.152 4 C -0.466 4.466 5 H 0.086 0.914 6 C -0.201 4.201 7 N -0.507 5.507 8 Si 0.809 3.191 9 H -0.209 1.209 10 H -0.193 1.193 11 H -0.196 1.196 12 C 0.231 3.769 13 O -0.532 6.532 14 C -0.045 4.045 15 C -0.055 4.055 16 C -0.130 4.130 17 C -0.129 4.129 18 C -0.139 4.139 19 C -0.142 4.142 20 C -0.144 4.144 21 C -0.195 4.195 22 C 0.238 3.762 23 O -0.341 6.341 24 C -0.208 4.208 25 H 0.070 0.930 26 H 0.071 0.929 27 H 0.063 0.937 28 H 0.111 0.889 29 H 0.084 0.916 30 H 0.081 0.919 31 H 0.164 0.836 32 H 0.171 0.829 33 H 0.163 0.837 34 H 0.147 0.853 35 H 0.108 0.892 36 H 0.101 0.899 37 H 0.179 0.821 38 H 0.194 0.806 39 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -6.738 -7.660 10.661 14.756 hybrid contribution 0.256 1.144 -1.379 1.810 sum -6.482 -6.516 9.282 13.062 Atomic orbital electron populations 1.22148 0.95556 1.00091 1.01346 1.22005 0.95837 0.81395 1.01480 1.43953 1.53507 1.13036 1.04738 1.19695 1.41860 0.99822 0.85262 0.91359 1.25836 0.95414 0.97254 1.01565 1.70246 1.35821 1.16796 1.27834 0.85011 0.78246 0.77976 0.77905 1.20885 1.19346 1.19634 1.19964 0.84732 0.86892 0.85357 1.90480 1.52724 1.22636 1.87360 1.20093 0.94023 0.97477 0.92869 1.19024 0.91364 0.94714 1.00372 1.21258 0.97759 0.94610 0.99345 1.21423 0.92205 1.00526 0.98720 1.21437 1.00763 0.92218 0.99452 1.21251 0.94955 0.98085 0.99926 1.20910 0.94346 0.98395 1.00781 1.24069 0.93876 1.01790 0.99779 1.25993 0.88161 0.88863 0.73144 1.90355 1.16992 1.76521 1.50256 1.24420 0.93972 0.98445 1.03936 0.93019 0.92880 0.93677 0.88923 0.91567 0.91883 0.83559 0.82927 0.83671 0.85258 0.89188 0.89876 0.82128 0.80638 0.88929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.35 8.35 71.98 0.60 -4.75 16 2 C 0.11 4.89 4.67 86.38 0.40 5.29 16 3 N -0.44 -22.15 2.64 -635.52 -1.68 -23.83 16 4 C -0.34 -19.17 9.53 84.04 0.80 -18.37 16 5 H 0.07 4.26 7.18 -2.91 -0.02 4.24 16 6 C 0.00 0.04 5.35 84.93 0.45 0.50 16 7 N -0.87 -42.56 7.26 21.66 0.16 -42.41 16 8 Si 0.98 42.39 29.56 68.60 2.03 44.42 16 9 H -0.28 -12.82 7.11 99.48 0.71 -12.12 16 10 H -0.27 -11.01 7.11 99.48 0.71 -10.30 16 11 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 12 C 0.44 21.60 6.05 87.66 0.53 22.13 16 13 O -0.64 -37.27 15.49 -3.06 -0.05 -37.32 16 14 C -0.04 -1.43 0.48 -53.16 -0.03 -1.46 16 15 C -0.05 -1.62 2.61 -19.87 -0.05 -1.67 16 16 C -0.11 -2.55 6.63 22.27 0.15 -2.40 16 17 C -0.11 -2.14 9.90 22.27 0.22 -1.92 16 18 C -0.12 -2.49 10.03 22.27 0.22 -2.26 16 19 C -0.12 -3.18 9.74 22.27 0.22 -2.97 16 20 C -0.13 -4.02 8.27 22.27 0.18 -3.83 16 21 C -0.16 -4.95 7.06 30.51 0.22 -4.74 16 22 C 0.36 12.42 8.87 29.70 0.26 12.68 16 23 O -0.47 -18.98 17.99 -1.46 -0.03 -19.00 16 24 C -0.17 -4.84 5.22 30.41 0.16 -4.69 16 25 H 0.05 2.44 6.01 -2.39 -0.01 2.43 16 26 H 0.05 1.82 8.14 -2.39 -0.02 1.81 16 27 H 0.04 1.72 3.93 -2.39 -0.01 1.71 16 28 H 0.09 4.40 5.72 -2.39 -0.01 4.38 16 29 H 0.07 2.33 3.38 -2.39 -0.01 2.32 16 30 H 0.27 12.45 8.31 -92.71 -0.77 11.68 16 31 H 0.15 2.57 5.86 -2.91 -0.02 2.55 16 32 H 0.15 1.95 8.06 -2.91 -0.02 1.93 16 33 H 0.15 2.13 8.06 -2.91 -0.02 2.11 16 34 H 0.13 2.87 8.06 -2.91 -0.02 2.85 16 35 H 0.09 3.34 8.05 -2.91 -0.02 3.31 16 36 H 0.08 3.09 7.34 -2.39 -0.02 3.07 16 37 H 0.16 3.56 8.09 -2.39 -0.02 3.54 16 38 H 0.18 3.12 6.29 -2.38 -0.01 3.11 16 39 H 0.09 2.89 6.83 -2.39 -0.02 2.88 16 Total: -1.00 -71.43 306.30 5.86 -65.57 By element: Atomic # 1 Polarization: 19.94 SS G_CDS: 1.09 Total: 21.03 kcal Atomic # 6 Polarization: -12.80 SS G_CDS: 4.34 Total: -8.46 kcal Atomic # 7 Polarization: -64.72 SS G_CDS: -1.52 Total: -66.23 kcal Atomic # 8 Polarization: -56.24 SS G_CDS: -0.07 Total: -56.32 kcal Atomic # 14 Polarization: 42.39 SS G_CDS: 2.03 Total: 44.42 kcal Total: -71.43 5.86 -65.57 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362619346.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.919 kcal (2) G-P(sol) polarization free energy of solvation -71.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.567 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds