Wall clock time and date at job start Tue Mar 31 2020 06:18:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46899 * 109.47412 * 2 1 4 4 C 1.46897 * 111.00231 * 298.27952 * 3 2 1 5 5 C 1.53002 * 109.46815 * 294.22420 * 4 3 2 6 6 C 1.50700 * 115.56327 * 89.67665 * 5 4 3 7 7 H 1.07997 * 120.00053 * 219.39322 * 6 5 4 8 8 C 1.37877 * 120.00070 * 39.39380 * 6 5 4 9 9 N 1.31519 * 119.99816 * 9.86428 * 8 6 5 10 10 Si 1.86800 * 120.00268 * 189.86446 * 8 6 5 11 11 H 1.48500 * 109.47074 * 60.00012 * 10 8 6 12 12 H 1.48498 * 109.47185 * 179.97438 * 10 8 6 13 13 H 1.48500 * 109.46818 * 299.99941 * 10 8 6 14 14 C 1.53004 * 117.49795 * 303.98769 * 5 4 3 15 15 C 1.52999 * 117.49813 * 235.36451 * 5 4 3 16 16 C 1.46902 * 110.99844 * 62.23521 * 3 2 1 17 17 H 1.09006 * 110.01023 * 299.71388 * 16 3 2 18 18 C 1.53871 * 110.02909 * 61.09145 * 16 3 2 19 19 C 1.54169 * 108.70294 * 166.47502 * 18 16 3 20 20 S 1.82919 * 105.08563 * 332.09312 * 19 18 16 21 21 O 1.42094 * 109.35257 * 115.52271 * 20 19 18 22 22 O 1.42103 * 109.35353 * 248.59500 * 20 19 18 23 23 C 1.55040 * 110.02743 * 178.33961 * 16 3 2 24 24 H 1.08995 * 109.47458 * 64.46847 * 1 2 3 25 25 H 1.09004 * 109.47400 * 184.47660 * 1 2 3 26 26 H 1.09010 * 109.46763 * 304.47479 * 1 2 3 27 27 H 1.09006 * 109.46783 * 239.99945 * 2 1 3 28 28 H 1.08998 * 109.47278 * 120.00719 * 2 1 3 29 29 H 1.08997 * 109.47193 * 174.22579 * 4 3 2 30 30 H 1.08997 * 109.46842 * 54.22106 * 4 3 2 31 31 H 0.96999 * 119.99914 * 174.98826 * 9 8 6 32 32 H 1.08997 * 117.49626 * 145.02784 * 14 5 4 33 33 H 1.08994 * 117.49816 * 359.97438 * 14 5 4 34 34 H 1.09006 * 117.49943 * 359.97438 * 15 5 4 35 35 H 1.08993 * 117.50532 * 214.98186 * 15 5 4 36 36 H 1.09002 * 109.65268 * 286.32428 * 18 16 3 37 37 H 1.09002 * 109.64984 * 46.75575 * 18 16 3 38 38 H 1.08998 * 110.32207 * 90.99673 * 19 18 16 39 39 H 1.09000 * 110.31730 * 213.19494 * 19 18 16 40 40 H 1.08998 * 110.79050 * 316.53809 * 23 16 3 41 41 H 1.08999 * 110.79616 * 80.00056 * 23 16 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.5826 2.0979 -1.2077 5 6 2.2442 1.4717 -2.4370 6 6 1.4815 0.3433 -3.0820 7 1 2.0102 -0.5194 -3.4596 8 6 0.1087 0.4123 -3.1901 9 7 -0.5172 1.5349 -2.9115 10 14 -0.8621 -1.0888 -3.7322 11 1 -0.6331 -2.1992 -2.7732 12 1 -2.3090 -0.7563 -3.7674 13 1 -0.4160 -1.5042 -5.0863 14 6 3.7721 1.3919 -2.4534 15 6 3.0487 2.3954 -3.3538 16 6 1.5928 2.0942 1.2136 17 1 0.5044 2.1182 1.2683 18 6 2.1680 1.3992 2.4600 19 6 1.9980 2.3371 3.6717 20 16 2.0114 4.0268 2.9714 21 8 0.7461 4.6362 3.1878 22 8 3.1977 4.6955 3.3772 23 6 2.1561 3.5387 1.2102 24 1 -0.3634 0.4429 -0.9272 25 1 -0.3634 -1.0246 0.0802 26 1 -0.3633 0.5818 0.8473 27 1 1.8932 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8899 29 1 1.8706 3.1466 -1.1347 30 1 0.4992 2.0242 -1.3010 31 1 -1.4737 1.6058 -3.0569 32 1 4.2255 0.5233 -2.9307 33 1 4.3059 1.7858 -1.5886 34 1 3.1063 3.4493 -3.0814 35 1 3.0264 2.1870 -4.4234 36 1 1.6321 0.4672 2.6401 37 1 3.2266 1.1894 2.3071 38 1 1.0491 2.1419 4.1714 39 1 2.8267 2.2095 4.3682 40 1 3.1984 3.5468 0.8912 41 1 1.5517 4.1883 0.5771 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000395707857.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:54 Heat of formation + Delta-G solvation = -29.767073 kcal Electronic energy + Delta-G solvation = -22572.868281 eV Core-core repulsion = 19388.488431 eV Total energy + Delta-G solvation = -3184.379849 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 287.134 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -38.77246 -36.97201 -36.25051 -35.92226 -33.60818 -32.33783 -30.34165 -28.15662 -26.17360 -25.47890 -23.65075 -22.26082 -21.06467 -19.71649 -18.77029 -18.41225 -16.83334 -16.67879 -16.12444 -15.63634 -14.95550 -14.77279 -14.65921 -14.21347 -13.85236 -13.76663 -12.95483 -12.80437 -12.50231 -12.39624 -12.11017 -12.01168 -11.89340 -11.59907 -11.46457 -11.32596 -11.07040 -11.00552 -10.82009 -10.68073 -10.53131 -10.33302 -10.22971 -10.12351 -9.77054 -9.34412 -8.92009 -8.68818 -8.20246 -7.43191 -6.11345 -4.18466 0.10326 2.56695 3.18112 3.24746 3.27919 3.63731 4.01087 4.25508 4.33677 4.59924 4.72279 4.83464 4.92855 5.06572 5.11116 5.51869 5.61913 5.63477 5.73278 5.86643 5.98941 6.04053 6.11576 6.15313 6.28641 6.44126 6.53737 6.59212 6.80039 6.81991 6.90923 7.07318 7.14719 7.27147 7.39925 7.54900 7.80725 7.96733 8.06453 8.39534 8.78030 9.38781 10.84190 Molecular weight = 287.13amu Principal moments of inertia in cm(-1) A = 0.023354 B = 0.005544 C = 0.005122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1198.673120 B = 5049.267299 C = 5465.235643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.056 3.944 3 N -0.514 5.514 4 C 0.066 3.934 5 C 0.059 3.941 6 C -0.477 4.477 7 H 0.059 0.941 8 C 0.072 3.928 9 N -0.881 5.881 10 Si 0.880 3.120 11 H -0.273 1.273 12 H -0.286 1.286 13 H -0.277 1.277 14 C -0.193 4.193 15 C -0.204 4.204 16 C 0.080 3.920 17 H 0.064 0.936 18 C -0.108 4.108 19 C -0.590 4.590 20 S 2.383 3.617 21 O -0.943 6.943 22 O -0.946 6.946 23 C -0.572 4.572 24 H 0.104 0.896 25 H 0.042 0.958 26 H 0.036 0.964 27 H 0.102 0.898 28 H 0.049 0.951 29 H 0.041 0.959 30 H 0.108 0.892 31 H 0.263 0.737 32 H 0.068 0.932 33 H 0.073 0.927 34 H 0.061 0.939 35 H 0.073 0.927 36 H 0.089 0.911 37 H 0.093 0.907 38 H 0.132 0.868 39 H 0.135 0.865 40 H 0.145 0.855 41 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.091 -0.273 10.177 10.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.268 4.268 2 C -0.072 4.072 3 N -0.238 5.238 4 C -0.060 4.060 5 C 0.058 3.942 6 C -0.514 4.514 7 H 0.077 0.923 8 C -0.129 4.129 9 N -0.519 5.519 10 Si 0.707 3.293 11 H -0.198 1.198 12 H -0.211 1.211 13 H -0.202 1.202 14 C -0.230 4.230 15 C -0.242 4.242 16 C -0.031 4.031 17 H 0.082 0.918 18 C -0.147 4.147 19 C -0.720 4.720 20 S 2.567 3.433 21 O -0.941 6.941 22 O -0.943 6.943 23 C -0.703 4.703 24 H 0.122 0.878 25 H 0.061 0.939 26 H 0.055 0.945 27 H 0.120 0.880 28 H 0.068 0.932 29 H 0.059 0.941 30 H 0.126 0.874 31 H 0.074 0.926 32 H 0.086 0.914 33 H 0.092 0.908 34 H 0.080 0.920 35 H 0.092 0.908 36 H 0.108 0.892 37 H 0.111 0.889 38 H 0.150 0.850 39 H 0.153 0.847 40 H 0.163 0.837 41 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 3.341 0.681 10.688 11.219 hybrid contribution -1.363 -1.476 -0.771 2.151 sum 1.979 -0.795 9.917 10.144 Atomic orbital electron populations 1.22717 0.98939 1.00918 1.04192 1.22162 0.92888 0.89758 1.02355 1.62415 1.58688 1.02274 1.00431 1.22192 1.03981 0.93682 0.86111 1.18831 0.87265 0.95460 0.92641 1.20588 0.90875 1.02680 1.37288 0.92282 1.24892 0.97589 0.95659 0.94712 1.69742 1.09965 1.24477 1.47751 0.86842 0.79179 0.83738 0.79493 1.19817 1.21104 1.20208 1.22698 0.98464 1.00753 1.01112 1.22974 1.09887 0.94349 0.97008 1.22186 0.98006 0.89759 0.93133 0.91844 1.21972 1.04395 0.98935 0.89366 1.30441 1.11215 1.21874 1.08474 1.09144 0.75131 0.78602 0.80410 1.93604 1.41939 1.74059 1.84451 1.93590 1.48055 1.71813 1.80877 1.30718 1.11681 1.06219 1.21644 0.87790 0.93931 0.94523 0.87990 0.93239 0.94070 0.87431 0.92601 0.91354 0.90841 0.92022 0.90805 0.89242 0.88861 0.84953 0.84674 0.83664 0.84444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -3.84 9.21 37.15 0.34 -3.50 16 2 C 0.06 1.00 5.35 -3.83 -0.02 0.98 16 3 N -0.51 -8.98 4.40 -224.82 -0.99 -9.97 16 4 C 0.07 1.38 4.36 -3.82 -0.02 1.37 16 5 C 0.06 1.32 1.39 -155.66 -0.22 1.11 16 6 C -0.48 -11.67 7.07 -34.44 -0.24 -11.91 16 7 H 0.06 1.48 7.83 -52.49 -0.41 1.06 16 8 C 0.07 1.76 3.42 -17.82 -0.06 1.70 16 9 N -0.88 -22.07 9.95 55.43 0.55 -21.52 16 10 Si 0.88 19.40 29.52 -169.99 -5.02 14.38 16 11 H -0.27 -5.92 7.11 56.52 0.40 -5.51 16 12 H -0.29 -6.33 7.11 56.52 0.40 -5.93 16 13 H -0.28 -6.19 7.11 56.52 0.40 -5.78 16 14 C -0.19 -3.97 9.75 -26.73 -0.26 -4.23 16 15 C -0.20 -4.44 9.88 -26.73 -0.26 -4.70 16 16 C 0.08 1.14 1.97 -66.18 -0.13 1.01 16 17 H 0.06 0.95 6.32 -51.93 -0.33 0.62 16 18 C -0.11 -1.20 5.07 -25.67 -0.13 -1.33 16 19 C -0.59 -5.44 7.26 37.77 0.27 -5.17 16 20 S 2.38 28.72 6.10 -107.50 -0.66 28.07 16 21 O -0.94 -14.60 18.14 -57.73 -1.05 -15.65 16 22 O -0.95 -14.13 18.15 -57.73 -1.05 -15.18 16 23 C -0.57 -7.40 5.63 38.24 0.22 -7.18 16 24 H 0.10 2.23 3.47 -51.93 -0.18 2.05 16 25 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 26 H 0.04 0.60 6.25 -51.92 -0.32 0.28 16 27 H 0.10 2.08 5.93 -51.93 -0.31 1.77 16 28 H 0.05 0.75 6.59 -51.93 -0.34 0.40 16 29 H 0.04 0.83 6.04 -51.93 -0.31 0.52 16 30 H 0.11 2.49 3.56 -51.93 -0.19 2.30 16 31 H 0.26 6.45 8.32 -40.82 -0.34 6.11 16 32 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 33 H 0.07 1.43 8.14 -51.93 -0.42 1.00 16 34 H 0.06 1.28 8.03 -51.93 -0.42 0.86 16 35 H 0.07 1.65 8.14 -51.93 -0.42 1.23 16 36 H 0.09 0.94 7.22 -51.93 -0.37 0.57 16 37 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 38 H 0.13 1.05 8.14 -51.93 -0.42 0.63 16 39 H 0.13 0.99 8.14 -51.93 -0.42 0.57 16 40 H 0.15 1.79 8.14 -51.93 -0.42 1.37 16 41 H 0.14 1.80 7.45 -51.93 -0.39 1.41 16 LS Contribution 320.09 15.07 4.82 4.82 Total: -1.00 -29.55 320.09 -9.98 -39.53 By element: Atomic # 1 Polarization: 13.47 SS G_CDS: -6.09 Total: 7.38 kcal Atomic # 6 Polarization: -31.35 SS G_CDS: -0.51 Total: -31.86 kcal Atomic # 7 Polarization: -31.06 SS G_CDS: -0.44 Total: -31.49 kcal Atomic # 8 Polarization: -28.73 SS G_CDS: -2.10 Total: -30.83 kcal Atomic # 14 Polarization: 19.40 SS G_CDS: -5.02 Total: 14.38 kcal Atomic # 16 Polarization: 28.72 SS G_CDS: -0.66 Total: 28.07 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -29.55 -9.98 -39.53 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395707857.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.762 kcal (2) G-P(sol) polarization free energy of solvation -29.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.529 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds