Wall clock time and date at job start Tue Mar 31 2020 06:18:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46899 * 109.47412 * 2 1 4 4 C 1.46897 * 111.00231 * 298.27952 * 3 2 1 5 5 C 1.53002 * 109.46815 * 294.22420 * 4 3 2 6 6 C 1.50700 * 115.56327 * 89.67665 * 5 4 3 7 7 H 1.07997 * 120.00053 * 219.39322 * 6 5 4 8 8 C 1.37877 * 120.00070 * 39.39380 * 6 5 4 9 9 N 1.31519 * 119.99816 * 9.86428 * 8 6 5 10 10 Si 1.86800 * 120.00268 * 189.86446 * 8 6 5 11 11 H 1.48500 * 109.47074 * 60.00012 * 10 8 6 12 12 H 1.48498 * 109.47185 * 179.97438 * 10 8 6 13 13 H 1.48500 * 109.46818 * 299.99941 * 10 8 6 14 14 C 1.53004 * 117.49795 * 303.98769 * 5 4 3 15 15 C 1.52999 * 117.49813 * 235.36451 * 5 4 3 16 16 C 1.46902 * 110.99844 * 62.23521 * 3 2 1 17 17 H 1.09006 * 110.01023 * 299.71388 * 16 3 2 18 18 C 1.53871 * 110.02909 * 61.09145 * 16 3 2 19 19 C 1.54169 * 108.70294 * 166.47502 * 18 16 3 20 20 S 1.82919 * 105.08563 * 332.09312 * 19 18 16 21 21 O 1.42094 * 109.35257 * 115.52271 * 20 19 18 22 22 O 1.42103 * 109.35353 * 248.59500 * 20 19 18 23 23 C 1.55040 * 110.02743 * 178.33961 * 16 3 2 24 24 H 1.08995 * 109.47458 * 64.46847 * 1 2 3 25 25 H 1.09004 * 109.47400 * 184.47660 * 1 2 3 26 26 H 1.09010 * 109.46763 * 304.47479 * 1 2 3 27 27 H 1.09006 * 109.46783 * 239.99945 * 2 1 3 28 28 H 1.08998 * 109.47278 * 120.00719 * 2 1 3 29 29 H 1.08997 * 109.47193 * 174.22579 * 4 3 2 30 30 H 1.08997 * 109.46842 * 54.22106 * 4 3 2 31 31 H 0.96999 * 119.99914 * 174.98826 * 9 8 6 32 32 H 1.08997 * 117.49626 * 145.02784 * 14 5 4 33 33 H 1.08994 * 117.49816 * 359.97438 * 14 5 4 34 34 H 1.09006 * 117.49943 * 359.97438 * 15 5 4 35 35 H 1.08993 * 117.50532 * 214.98186 * 15 5 4 36 36 H 1.09002 * 109.65268 * 286.32428 * 18 16 3 37 37 H 1.09002 * 109.64984 * 46.75575 * 18 16 3 38 38 H 1.08998 * 110.32207 * 90.99673 * 19 18 16 39 39 H 1.09000 * 110.31730 * 213.19494 * 19 18 16 40 40 H 1.08998 * 110.79050 * 316.53809 * 23 16 3 41 41 H 1.08999 * 110.79616 * 80.00056 * 23 16 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.5826 2.0979 -1.2077 5 6 2.2442 1.4717 -2.4370 6 6 1.4815 0.3433 -3.0820 7 1 2.0102 -0.5194 -3.4596 8 6 0.1087 0.4123 -3.1901 9 7 -0.5172 1.5349 -2.9115 10 14 -0.8621 -1.0888 -3.7322 11 1 -0.6331 -2.1992 -2.7732 12 1 -2.3090 -0.7563 -3.7674 13 1 -0.4160 -1.5042 -5.0863 14 6 3.7721 1.3919 -2.4534 15 6 3.0487 2.3954 -3.3538 16 6 1.5928 2.0942 1.2136 17 1 0.5044 2.1182 1.2683 18 6 2.1680 1.3992 2.4600 19 6 1.9980 2.3371 3.6717 20 16 2.0114 4.0268 2.9714 21 8 0.7461 4.6362 3.1878 22 8 3.1977 4.6955 3.3772 23 6 2.1561 3.5387 1.2102 24 1 -0.3634 0.4429 -0.9272 25 1 -0.3634 -1.0246 0.0802 26 1 -0.3633 0.5818 0.8473 27 1 1.8932 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8899 29 1 1.8706 3.1466 -1.1347 30 1 0.4992 2.0242 -1.3010 31 1 -1.4737 1.6058 -3.0569 32 1 4.2255 0.5233 -2.9307 33 1 4.3059 1.7858 -1.5886 34 1 3.1063 3.4493 -3.0814 35 1 3.0264 2.1870 -4.4234 36 1 1.6321 0.4672 2.6401 37 1 3.2266 1.1894 2.3071 38 1 1.0491 2.1419 4.1714 39 1 2.8267 2.2095 4.3682 40 1 3.1984 3.5468 0.8912 41 1 1.5517 4.1883 0.5771 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000395707857.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:54 Heat of formation + Delta-G solvation = -50.236444 kcal Electronic energy + Delta-G solvation = -22573.755899 eV Core-core repulsion = 19388.488431 eV Total energy + Delta-G solvation = -3185.267468 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 287.134 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.13833 -38.06473 -37.71427 -37.03508 -34.87740 -34.12915 -31.49733 -29.43580 -27.78620 -27.02658 -24.86655 -23.50005 -22.77135 -21.13096 -19.98267 -19.73663 -18.05411 -17.83286 -17.62706 -16.81945 -16.56057 -16.06971 -15.89449 -15.56755 -15.23363 -14.99385 -14.40529 -14.19152 -13.85988 -13.64395 -13.22609 -13.15053 -13.11593 -13.00897 -12.89230 -12.83590 -12.56302 -12.45248 -12.24385 -12.12499 -11.98515 -11.89466 -11.62374 -11.21956 -11.14834 -11.00140 -10.69428 -10.43701 -9.95414 -8.90012 -7.95882 -6.09020 -0.85858 1.40142 1.44982 1.48666 1.63213 2.42814 2.68300 2.99709 3.08706 3.23581 3.55095 3.78410 3.84816 3.98531 4.06216 4.10738 4.38535 4.55085 4.60751 4.65818 4.77175 4.78573 4.84143 4.88045 4.89949 5.01558 5.09856 5.10676 5.19557 5.22671 5.29665 5.39363 5.60810 5.63871 5.69344 5.85323 6.14962 6.45726 6.55867 6.57544 6.91509 7.49644 8.95581 Molecular weight = 287.13amu Principal moments of inertia in cm(-1) A = 0.023354 B = 0.005544 C = 0.005122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1198.673120 B = 5049.267299 C = 5465.235643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.059 3.941 3 N -0.511 5.511 4 C 0.075 3.925 5 C 0.039 3.961 6 C -0.488 4.488 7 H 0.046 0.954 8 C 0.048 3.952 9 N -0.896 5.896 10 Si 0.921 3.079 11 H -0.266 1.266 12 H -0.287 1.287 13 H -0.282 1.282 14 C -0.171 4.171 15 C -0.213 4.213 16 C 0.070 3.930 17 H 0.056 0.944 18 C -0.106 4.106 19 C -0.558 4.558 20 S 2.400 3.600 21 O -0.982 6.982 22 O -0.976 6.976 23 C -0.577 4.577 24 H 0.073 0.927 25 H 0.048 0.952 26 H 0.052 0.948 27 H 0.072 0.928 28 H 0.083 0.917 29 H 0.039 0.961 30 H 0.086 0.914 31 H 0.260 0.740 32 H 0.067 0.933 33 H 0.089 0.911 34 H 0.069 0.931 35 H 0.061 0.939 36 H 0.104 0.896 37 H 0.105 0.895 38 H 0.155 0.845 39 H 0.167 0.833 40 H 0.151 0.849 41 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.754 -1.418 12.314 12.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.268 4.268 2 C -0.069 4.069 3 N -0.234 5.234 4 C -0.052 4.052 5 C 0.038 3.962 6 C -0.525 4.525 7 H 0.064 0.936 8 C -0.151 4.151 9 N -0.535 5.535 10 Si 0.748 3.252 11 H -0.191 1.191 12 H -0.213 1.213 13 H -0.207 1.207 14 C -0.208 4.208 15 C -0.252 4.252 16 C -0.040 4.040 17 H 0.074 0.926 18 C -0.145 4.145 19 C -0.692 4.692 20 S 2.587 3.413 21 O -0.979 6.979 22 O -0.973 6.973 23 C -0.707 4.707 24 H 0.092 0.908 25 H 0.067 0.933 26 H 0.071 0.929 27 H 0.091 0.909 28 H 0.102 0.898 29 H 0.057 0.943 30 H 0.103 0.897 31 H 0.070 0.930 32 H 0.086 0.914 33 H 0.107 0.893 34 H 0.088 0.912 35 H 0.079 0.921 36 H 0.123 0.877 37 H 0.123 0.877 38 H 0.173 0.827 39 H 0.185 0.815 40 H 0.169 0.831 41 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 4.014 -0.437 12.811 13.432 hybrid contribution -1.558 -1.149 -1.440 2.412 sum 2.456 -1.586 11.371 11.741 Atomic orbital electron populations 1.22671 0.99544 1.01275 1.03299 1.22103 0.92362 0.89909 1.02529 1.62339 1.58521 1.02171 1.00407 1.21916 1.02366 0.93799 0.87155 1.18958 0.88343 0.95374 0.93483 1.20690 0.91323 1.02919 1.37576 0.93584 1.25246 0.98027 0.97034 0.94811 1.69863 1.09733 1.25533 1.48386 0.86197 0.78046 0.82012 0.78931 1.19053 1.21294 1.20733 1.22652 0.97324 0.99987 1.00886 1.22976 1.10689 0.95050 0.96452 1.22370 0.98002 0.90474 0.93184 0.92611 1.21991 1.05122 0.99323 0.88063 1.30270 1.13941 1.16846 1.08114 1.08535 0.73489 0.79807 0.79456 1.93552 1.43414 1.76207 1.84709 1.93548 1.48906 1.73854 1.80980 1.30723 1.11723 1.05471 1.22824 0.90814 0.93272 0.92925 0.90929 0.89832 0.94257 0.89656 0.92997 0.91443 0.89273 0.91223 0.92075 0.87728 0.87685 0.82713 0.81510 0.83138 0.85495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -7.41 9.21 71.98 0.66 -6.75 16 2 C 0.06 1.98 5.35 86.30 0.46 2.44 16 3 N -0.51 -17.05 4.40 -865.19 -3.81 -20.85 16 4 C 0.07 3.11 4.36 86.30 0.38 3.48 16 5 C 0.04 1.77 1.39 -52.93 -0.07 1.69 16 6 C -0.49 -24.13 7.07 25.60 0.18 -23.95 16 7 H 0.05 2.34 7.83 -2.91 -0.02 2.31 16 8 C 0.05 2.37 3.42 84.65 0.29 2.66 16 9 N -0.90 -45.65 9.95 21.45 0.21 -45.44 16 10 Si 0.92 39.94 29.52 68.60 2.02 41.96 16 11 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 12 H -0.29 -12.45 7.11 99.48 0.71 -11.74 16 13 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 14 C -0.17 -6.90 9.75 30.60 0.30 -6.60 16 15 C -0.21 -9.31 9.88 30.60 0.30 -9.01 16 16 C 0.07 1.86 1.97 45.91 0.09 1.95 16 17 H 0.06 1.58 6.32 -2.38 -0.02 1.56 16 18 C -0.11 -1.90 5.07 31.28 0.16 -1.74 16 19 C -0.56 -7.74 7.26 72.38 0.53 -7.21 16 20 S 2.40 53.53 6.10 -56.49 -0.34 53.18 16 21 O -0.98 -29.53 18.14 -127.47 -2.31 -31.84 16 22 O -0.98 -27.60 18.15 -127.47 -2.31 -29.92 16 23 C -0.58 -14.29 5.63 72.68 0.41 -13.88 16 24 H 0.07 3.14 3.47 -2.39 -0.01 3.13 16 25 H 0.05 1.62 8.14 -2.38 -0.02 1.60 16 26 H 0.05 1.64 6.25 -2.38 -0.01 1.63 16 27 H 0.07 2.90 5.93 -2.38 -0.01 2.89 16 28 H 0.08 2.22 6.59 -2.39 -0.02 2.21 16 29 H 0.04 1.60 6.04 -2.39 -0.01 1.59 16 30 H 0.09 4.00 3.56 -2.39 -0.01 3.99 16 31 H 0.26 12.97 8.32 -92.71 -0.77 12.20 16 32 H 0.07 2.71 8.14 -2.39 -0.02 2.69 16 33 H 0.09 3.29 8.14 -2.39 -0.02 3.27 16 34 H 0.07 2.88 8.03 -2.38 -0.02 2.86 16 35 H 0.06 2.77 8.14 -2.39 -0.02 2.75 16 36 H 0.10 1.65 7.22 -2.39 -0.02 1.63 16 37 H 0.10 1.71 8.14 -2.39 -0.02 1.69 16 38 H 0.15 1.64 8.14 -2.39 -0.02 1.62 16 39 H 0.17 1.46 8.14 -2.39 -0.02 1.44 16 40 H 0.15 3.52 8.14 -2.39 -0.02 3.50 16 41 H 0.13 3.37 7.45 -2.39 -0.02 3.35 16 Total: -1.00 -63.84 320.09 -1.83 -65.67 By element: Atomic # 1 Polarization: 23.13 SS G_CDS: 1.03 Total: 24.16 kcal Atomic # 6 Polarization: -60.60 SS G_CDS: 3.68 Total: -56.92 kcal Atomic # 7 Polarization: -62.70 SS G_CDS: -3.59 Total: -66.29 kcal Atomic # 8 Polarization: -57.13 SS G_CDS: -4.63 Total: -61.76 kcal Atomic # 14 Polarization: 39.94 SS G_CDS: 2.02 Total: 41.96 kcal Atomic # 16 Polarization: 53.53 SS G_CDS: -0.34 Total: 53.18 kcal Total: -63.84 -1.83 -65.67 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395707857.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.431 kcal (2) G-P(sol) polarization free energy of solvation -63.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.668 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds