Wall clock time and date at job start Tue Mar 31 2020 06:00:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09007 * 109.59837 * 2 1 4 4 C 1.53177 * 109.60163 * 120.32085 * 2 1 3 5 5 N 1.46470 * 109.90118 * 57.12852 * 4 2 1 6 6 C 1.46898 * 111.00023 * 196.99631 * 5 4 2 7 7 C 1.53009 * 109.47042 * 163.81492 * 6 5 4 8 8 C 1.50696 * 115.54720 * 304.69378 * 7 6 5 9 9 H 1.08006 * 119.99998 * 91.91507 * 8 7 6 10 10 C 1.37873 * 120.00069 * 271.90488 * 8 7 6 11 11 N 1.31517 * 119.99924 * 7.26160 * 10 8 7 12 12 Si 1.86804 * 120.00075 * 187.26212 * 10 8 7 13 13 H 1.48495 * 109.47050 * 0.02562 * 12 10 8 14 14 H 1.48500 * 109.47083 * 120.00186 * 12 10 8 15 15 H 1.48501 * 109.47139 * 239.99822 * 12 10 8 16 16 C 1.53002 * 117.51365 * 90.39366 * 7 6 5 17 17 C 1.53001 * 117.49447 * 159.02141 * 7 6 5 18 18 C 1.46474 * 112.46700 * 71.95842 * 5 4 2 19 19 C 1.53184 * 109.89698 * 288.04234 * 18 5 4 20 20 H 1.09005 * 109.73412 * 302.79240 * 19 18 5 21 21 C 1.53005 * 109.60125 * 182.39468 * 19 18 5 22 22 S 1.81807 * 108.68269 * 62.63270 * 19 18 5 23 23 O 1.42095 * 108.70612 * 193.42858 * 22 19 18 24 24 O 1.42108 * 108.70349 * 61.93847 * 22 19 18 25 25 H 1.08996 * 109.47320 * 299.67218 * 1 2 3 26 26 H 1.08996 * 109.46978 * 59.67609 * 1 2 3 27 27 H 1.09004 * 109.46670 * 179.67410 * 1 2 3 28 28 H 1.08993 * 109.40334 * 296.99208 * 4 2 1 29 29 H 1.09000 * 109.32665 * 177.21117 * 4 2 1 30 30 H 1.09001 * 109.47238 * 43.81997 * 6 5 4 31 31 H 1.09000 * 109.47382 * 283.81291 * 6 5 4 32 32 H 0.97000 * 119.99990 * 5.46336 * 11 10 8 33 33 H 1.08994 * 117.49321 * 214.96875 * 16 7 6 34 34 H 1.08996 * 117.50336 * 359.97438 * 16 7 6 35 35 H 1.08992 * 117.49935 * 359.97438 * 17 7 6 36 36 H 1.09002 * 117.49008 * 144.97674 * 17 7 6 37 37 H 1.08997 * 109.39897 * 48.16980 * 18 5 4 38 38 H 1.08994 * 109.39773 * 167.90724 * 18 5 4 39 39 H 1.09008 * 109.46529 * 300.80402 * 21 19 18 40 40 H 1.08990 * 109.47059 * 60.80741 * 21 19 18 41 41 H 1.09000 * 109.47093 * 180.81128 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8957 1.0269 0.0000 4 6 2.0439 -0.7285 1.2456 5 7 1.5070 -2.0907 1.2836 6 6 1.6388 -2.6713 2.6265 7 6 0.7311 -3.8975 2.7433 8 6 -0.7233 -3.6619 2.4268 9 1 -1.0885 -3.8131 1.4217 10 6 -1.5877 -3.2536 3.4202 11 7 -1.1208 -2.9321 4.6069 12 14 -3.4221 -3.1571 3.0807 13 1 -3.6884 -3.5691 1.6791 14 1 -4.1456 -4.0632 4.0085 15 1 -3.8906 -1.7628 3.2849 16 6 1.3256 -5.2556 2.3652 17 6 1.0605 -4.9188 3.8339 18 6 2.1149 -2.9603 0.2738 19 6 1.6118 -2.5718 -1.1199 20 1 0.5237 -2.6306 -1.1481 21 6 2.2043 -3.5217 -2.1628 22 16 2.1400 -0.8689 -1.4760 23 8 1.4252 -0.3978 -2.6100 24 8 3.5604 -0.8232 -1.4772 25 1 -0.3634 0.5087 0.8929 26 1 -0.3633 0.5188 -0.8870 27 1 -0.3633 -1.0277 -0.0058 28 1 1.7259 -0.1890 2.1376 29 1 3.1328 -0.7693 1.2162 30 1 1.3479 -1.9315 3.3723 31 1 2.6741 -2.9684 2.7939 32 1 -0.1634 -2.9056 4.7606 33 1 0.6646 -5.9787 1.8874 34 1 2.3634 -5.2758 2.0326 35 1 1.9239 -4.7174 4.4678 36 1 0.2250 -5.4201 4.3227 37 1 3.1991 -2.8541 0.3099 38 1 1.8469 -3.9965 0.4797 39 1 3.2924 -3.4654 -2.1289 40 1 1.8863 -4.5417 -1.9474 41 1 1.8564 -3.2346 -3.1551 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000400966850.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:51 Heat of formation + Delta-G solvation = -43.530140 kcal Electronic energy + Delta-G solvation = -22802.444832 eV Core-core repulsion = 19617.468171 eV Total energy + Delta-G solvation = -3184.976661 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 287.134 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -38.81419 -36.93230 -36.36187 -35.93342 -34.03372 -32.33657 -31.79893 -27.04117 -26.81668 -24.88887 -23.62478 -22.53110 -21.28921 -20.92507 -19.37527 -18.37558 -16.91000 -16.53957 -16.44182 -15.64969 -15.20911 -15.08179 -14.42253 -13.83667 -13.74269 -13.50873 -13.15232 -12.94975 -12.85811 -12.62618 -12.27248 -12.09406 -11.98780 -11.92647 -11.81283 -11.60441 -11.32739 -11.16247 -11.04878 -10.88544 -10.76879 -10.47992 -10.35204 -10.13912 -9.76690 -9.49276 -8.53314 -8.51190 -8.32050 -7.83097 -6.30285 -4.01764 0.15258 2.75149 3.44041 3.45506 3.59251 3.68713 3.86788 4.23366 4.52122 4.55026 4.69824 4.76612 4.99193 5.11942 5.13376 5.19901 5.35526 5.44087 5.55052 5.60666 5.74959 5.84945 5.92852 5.97129 5.97818 6.03657 6.05282 6.07337 6.19763 6.24660 6.45772 6.53061 6.56359 6.81208 7.13308 7.19637 7.43059 7.55108 8.29332 8.48327 8.91001 9.68981 11.07885 Molecular weight = 287.13amu Principal moments of inertia in cm(-1) A = 0.019380 B = 0.006548 C = 0.005868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1444.451290 B = 4275.044290 C = 4770.128068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.550 4.550 3 H 0.132 0.868 4 C 0.068 3.932 5 N -0.523 5.523 6 C 0.103 3.897 7 C 0.030 3.970 8 C -0.541 4.541 9 H 0.053 0.947 10 C 0.026 3.974 11 N -0.912 5.912 12 Si 1.065 2.935 13 H -0.290 1.290 14 H -0.290 1.290 15 H -0.290 1.290 16 C -0.204 4.204 17 C -0.177 4.177 18 C 0.069 3.931 19 C -0.550 4.550 20 H 0.150 0.850 21 C -0.139 4.139 22 S 2.402 3.598 23 O -0.947 6.947 24 O -0.949 6.949 25 H 0.077 0.923 26 H 0.063 0.937 27 H 0.090 0.910 28 H 0.096 0.904 29 H 0.045 0.955 30 H 0.074 0.926 31 H 0.011 0.989 32 H 0.272 0.728 33 H 0.080 0.920 34 H 0.063 0.937 35 H 0.064 0.936 36 H 0.086 0.914 37 H 0.042 0.958 38 H 0.111 0.889 39 H 0.069 0.931 40 H 0.083 0.917 41 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.061 2.289 -8.151 10.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.661 4.661 3 H 0.150 0.850 4 C -0.062 4.062 5 N -0.247 5.247 6 C -0.024 4.024 7 C 0.029 3.971 8 C -0.579 4.579 9 H 0.071 0.929 10 C -0.179 4.179 11 N -0.547 5.547 12 Si 0.894 3.106 13 H -0.216 1.216 14 H -0.216 1.216 15 H -0.217 1.217 16 C -0.242 4.242 17 C -0.215 4.215 18 C -0.060 4.060 19 C -0.661 4.661 20 H 0.168 0.832 21 C -0.197 4.197 22 S 2.586 3.414 23 O -0.944 6.944 24 O -0.946 6.946 25 H 0.096 0.904 26 H 0.081 0.919 27 H 0.109 0.891 28 H 0.115 0.885 29 H 0.063 0.937 30 H 0.093 0.907 31 H 0.029 0.971 32 H 0.083 0.917 33 H 0.099 0.901 34 H 0.082 0.918 35 H 0.082 0.918 36 H 0.104 0.896 37 H 0.060 0.940 38 H 0.129 0.871 39 H 0.088 0.912 40 H 0.102 0.898 41 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 4.575 2.995 -8.292 9.933 hybrid contribution 1.909 -0.550 0.225 2.000 sum 6.484 2.445 -8.067 10.634 Atomic orbital electron populations 1.21545 0.88671 1.05444 1.03261 1.29949 1.08419 1.11330 1.16416 0.85004 1.21843 0.96601 0.90775 0.96947 1.60859 1.57547 0.99975 1.06296 1.21769 0.95221 0.98321 0.87045 1.19116 0.95493 0.84783 0.97665 1.21105 0.90301 1.49084 0.97440 0.92855 1.25617 1.05481 0.93579 0.93205 1.70686 1.16696 1.44500 1.22865 0.83606 0.75299 0.76607 0.75058 1.21562 1.21633 1.21657 1.22978 0.98767 1.03424 0.98982 1.22742 1.01215 1.06894 0.90621 1.21948 0.95581 1.01229 0.87290 1.29927 1.12513 1.19949 1.03711 0.83219 1.21571 1.01275 1.00375 0.96513 1.08669 0.75753 0.79432 0.77518 1.93539 1.74747 1.79286 1.46832 1.93535 1.27761 1.86201 1.87084 0.90419 0.91852 0.89141 0.88521 0.93706 0.90719 0.97126 0.91699 0.90137 0.91810 0.91790 0.89582 0.94013 0.87060 0.91186 0.89781 0.91245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.84 8.79 37.16 0.33 -1.51 16 2 C -0.55 -7.38 3.42 -26.64 -0.09 -7.48 16 3 H 0.13 1.45 8.14 -51.92 -0.42 1.02 16 4 C 0.07 0.99 4.88 -3.97 -0.02 0.98 16 5 N -0.52 -8.91 3.24 -235.12 -0.76 -9.67 16 6 C 0.10 1.99 4.83 -3.82 -0.02 1.97 16 7 C 0.03 0.66 0.73 -155.66 -0.11 0.55 16 8 C -0.54 -13.49 8.55 -34.44 -0.29 -13.79 16 9 H 0.05 1.37 7.82 -52.48 -0.41 0.96 16 10 C 0.03 0.67 5.37 -17.82 -0.10 0.58 16 11 N -0.91 -25.21 13.41 55.43 0.74 -24.46 16 12 Si 1.06 23.99 29.91 -169.99 -5.08 18.90 16 13 H -0.29 -6.25 7.11 56.52 0.40 -5.85 16 14 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 15 H -0.29 -6.50 7.11 56.52 0.40 -6.09 16 16 C -0.20 -4.00 8.22 -26.73 -0.22 -4.22 16 17 C -0.18 -3.77 8.69 -26.73 -0.23 -4.01 16 18 C 0.07 1.05 4.54 -3.96 -0.02 1.04 16 19 C -0.55 -7.59 2.83 -26.63 -0.08 -7.67 16 20 H 0.15 2.04 7.38 -51.93 -0.38 1.66 16 21 C -0.14 -1.63 9.19 37.16 0.34 -1.29 16 22 S 2.40 35.04 4.28 -107.50 -0.46 34.58 16 23 O -0.95 -15.87 17.70 -57.80 -1.02 -16.89 16 24 O -0.95 -15.87 18.06 -57.80 -1.04 -16.91 16 25 H 0.08 1.09 8.14 -51.93 -0.42 0.66 16 26 H 0.06 0.80 7.96 -51.93 -0.41 0.38 16 27 H 0.09 1.39 6.46 -51.93 -0.34 1.06 16 28 H 0.10 1.40 7.69 -51.93 -0.40 1.00 16 29 H 0.04 0.62 7.93 -51.93 -0.41 0.20 16 30 H 0.07 1.55 7.28 -51.93 -0.38 1.17 16 31 H 0.01 0.19 8.03 -51.93 -0.42 -0.23 16 32 H 0.27 7.40 6.28 -40.82 -0.26 7.15 16 33 H 0.08 1.60 8.14 -51.93 -0.42 1.18 16 34 H 0.06 1.11 7.71 -51.93 -0.40 0.71 16 35 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 36 H 0.09 2.02 8.14 -51.93 -0.42 1.60 16 37 H 0.04 0.61 7.93 -51.93 -0.41 0.19 16 38 H 0.11 1.81 5.15 -51.93 -0.27 1.54 16 39 H 0.07 0.78 8.14 -51.92 -0.42 0.36 16 40 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16 41 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 LS Contribution 330.70 15.07 4.98 4.98 Total: -1.00 -30.32 330.70 -9.82 -40.14 By element: Atomic # 1 Polarization: 10.83 SS G_CDS: -6.66 Total: 4.17 kcal Atomic # 6 Polarization: -34.34 SS G_CDS: -0.51 Total: -34.85 kcal Atomic # 7 Polarization: -34.11 SS G_CDS: -0.02 Total: -34.13 kcal Atomic # 8 Polarization: -31.73 SS G_CDS: -2.07 Total: -33.80 kcal Atomic # 14 Polarization: 23.99 SS G_CDS: -5.08 Total: 18.90 kcal Atomic # 16 Polarization: 35.04 SS G_CDS: -0.46 Total: 34.58 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -30.32 -9.82 -40.14 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000400966850.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.392 kcal (2) G-P(sol) polarization free energy of solvation -30.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.138 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds