Wall clock time and date at job start Tue Mar 31 2020 06:00:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09007 * 109.59837 * 2 1 4 4 C 1.53177 * 109.60163 * 120.32085 * 2 1 3 5 5 N 1.46470 * 109.90118 * 57.12852 * 4 2 1 6 6 C 1.46898 * 111.00023 * 196.99631 * 5 4 2 7 7 C 1.53009 * 109.47042 * 163.81492 * 6 5 4 8 8 C 1.50696 * 115.54720 * 304.69378 * 7 6 5 9 9 H 1.08006 * 119.99998 * 91.91507 * 8 7 6 10 10 C 1.37873 * 120.00069 * 271.90488 * 8 7 6 11 11 N 1.31517 * 119.99924 * 7.26160 * 10 8 7 12 12 Si 1.86804 * 120.00075 * 187.26212 * 10 8 7 13 13 H 1.48495 * 109.47050 * 0.02562 * 12 10 8 14 14 H 1.48500 * 109.47083 * 120.00186 * 12 10 8 15 15 H 1.48501 * 109.47139 * 239.99822 * 12 10 8 16 16 C 1.53002 * 117.51365 * 90.39366 * 7 6 5 17 17 C 1.53001 * 117.49447 * 159.02141 * 7 6 5 18 18 C 1.46474 * 112.46700 * 71.95842 * 5 4 2 19 19 C 1.53184 * 109.89698 * 288.04234 * 18 5 4 20 20 H 1.09005 * 109.73412 * 302.79240 * 19 18 5 21 21 C 1.53005 * 109.60125 * 182.39468 * 19 18 5 22 22 S 1.81807 * 108.68269 * 62.63270 * 19 18 5 23 23 O 1.42095 * 108.70612 * 193.42858 * 22 19 18 24 24 O 1.42108 * 108.70349 * 61.93847 * 22 19 18 25 25 H 1.08996 * 109.47320 * 299.67218 * 1 2 3 26 26 H 1.08996 * 109.46978 * 59.67609 * 1 2 3 27 27 H 1.09004 * 109.46670 * 179.67410 * 1 2 3 28 28 H 1.08993 * 109.40334 * 296.99208 * 4 2 1 29 29 H 1.09000 * 109.32665 * 177.21117 * 4 2 1 30 30 H 1.09001 * 109.47238 * 43.81997 * 6 5 4 31 31 H 1.09000 * 109.47382 * 283.81291 * 6 5 4 32 32 H 0.97000 * 119.99990 * 5.46336 * 11 10 8 33 33 H 1.08994 * 117.49321 * 214.96875 * 16 7 6 34 34 H 1.08996 * 117.50336 * 359.97438 * 16 7 6 35 35 H 1.08992 * 117.49935 * 359.97438 * 17 7 6 36 36 H 1.09002 * 117.49008 * 144.97674 * 17 7 6 37 37 H 1.08997 * 109.39897 * 48.16980 * 18 5 4 38 38 H 1.08994 * 109.39773 * 167.90724 * 18 5 4 39 39 H 1.09008 * 109.46529 * 300.80402 * 21 19 18 40 40 H 1.08990 * 109.47059 * 60.80741 * 21 19 18 41 41 H 1.09000 * 109.47093 * 180.81128 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8957 1.0269 0.0000 4 6 2.0439 -0.7285 1.2456 5 7 1.5070 -2.0907 1.2836 6 6 1.6388 -2.6713 2.6265 7 6 0.7311 -3.8975 2.7433 8 6 -0.7233 -3.6619 2.4268 9 1 -1.0885 -3.8131 1.4217 10 6 -1.5877 -3.2536 3.4202 11 7 -1.1208 -2.9321 4.6069 12 14 -3.4221 -3.1571 3.0807 13 1 -3.6884 -3.5691 1.6791 14 1 -4.1456 -4.0632 4.0085 15 1 -3.8906 -1.7628 3.2849 16 6 1.3256 -5.2556 2.3652 17 6 1.0605 -4.9188 3.8339 18 6 2.1149 -2.9603 0.2738 19 6 1.6118 -2.5718 -1.1199 20 1 0.5237 -2.6306 -1.1481 21 6 2.2043 -3.5217 -2.1628 22 16 2.1400 -0.8689 -1.4760 23 8 1.4252 -0.3978 -2.6100 24 8 3.5604 -0.8232 -1.4772 25 1 -0.3634 0.5087 0.8929 26 1 -0.3633 0.5188 -0.8870 27 1 -0.3633 -1.0277 -0.0058 28 1 1.7259 -0.1890 2.1376 29 1 3.1328 -0.7693 1.2162 30 1 1.3479 -1.9315 3.3723 31 1 2.6741 -2.9684 2.7939 32 1 -0.1634 -2.9056 4.7606 33 1 0.6646 -5.9787 1.8874 34 1 2.3634 -5.2758 2.0326 35 1 1.9239 -4.7174 4.4678 36 1 0.2250 -5.4201 4.3227 37 1 3.1991 -2.8541 0.3099 38 1 1.8469 -3.9965 0.4797 39 1 3.2924 -3.4654 -2.1289 40 1 1.8863 -4.5417 -1.9474 41 1 1.8564 -3.2346 -3.1551 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000400966850.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:50 Heat of formation + Delta-G solvation = -63.092538 kcal Electronic energy + Delta-G solvation = -22803.293121 eV Core-core repulsion = 19617.468171 eV Total energy + Delta-G solvation = -3185.824950 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 287.134 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.17644 -38.22018 -37.84929 -37.16452 -35.11627 -33.87691 -33.43505 -28.36802 -27.97491 -26.77820 -24.92941 -23.70025 -22.86073 -22.13985 -21.14408 -19.54434 -18.48898 -17.87670 -17.63265 -16.86701 -16.47567 -16.39381 -15.75864 -15.59043 -15.33263 -14.76341 -14.44379 -14.28710 -14.04890 -13.89998 -13.71610 -13.43488 -13.22911 -13.19512 -13.03565 -12.90032 -12.60920 -12.58744 -12.49568 -12.34635 -12.13186 -12.11819 -11.90178 -11.57874 -11.19156 -10.83459 -10.38633 -10.30316 -10.11563 -9.14893 -8.33690 -6.03708 -0.98978 1.60127 1.62254 1.65451 1.80973 2.55654 2.61232 2.68096 3.02842 3.33859 3.43074 3.44462 3.59738 3.72973 3.93558 4.01658 4.13555 4.26035 4.35751 4.42872 4.50590 4.57016 4.61861 4.63652 4.68462 4.76599 4.85883 4.88815 4.92143 4.94833 5.02069 5.10740 5.14267 5.39647 5.49887 5.56346 6.06668 6.19044 6.39871 6.47212 6.92146 7.71392 9.05957 Molecular weight = 287.13amu Principal moments of inertia in cm(-1) A = 0.019380 B = 0.006548 C = 0.005868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1444.451290 B = 4275.044290 C = 4770.128068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.541 4.541 3 H 0.161 0.839 4 C 0.064 3.936 5 N -0.537 5.537 6 C 0.114 3.886 7 C 0.010 3.990 8 C -0.535 4.535 9 H 0.042 0.958 10 C -0.019 4.019 11 N -0.942 5.942 12 Si 1.099 2.901 13 H -0.276 1.276 14 H -0.292 1.292 15 H -0.288 1.288 16 C -0.178 4.178 17 C -0.185 4.185 18 C 0.067 3.933 19 C -0.543 4.543 20 H 0.150 0.850 21 C -0.144 4.144 22 S 2.411 3.589 23 O -0.970 6.970 24 O -0.969 6.969 25 H 0.075 0.925 26 H 0.076 0.924 27 H 0.073 0.927 28 H 0.096 0.904 29 H 0.059 0.941 30 H 0.053 0.947 31 H 0.028 0.972 32 H 0.265 0.735 33 H 0.075 0.925 34 H 0.093 0.907 35 H 0.079 0.921 36 H 0.056 0.944 37 H 0.054 0.946 38 H 0.104 0.896 39 H 0.076 0.924 40 H 0.095 0.905 41 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.834 2.363 -9.297 11.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.653 4.653 3 H 0.178 0.822 4 C -0.065 4.065 5 N -0.261 5.261 6 C -0.013 4.013 7 C 0.009 3.991 8 C -0.574 4.574 9 H 0.060 0.940 10 C -0.218 4.218 11 N -0.579 5.579 12 Si 0.926 3.074 13 H -0.201 1.201 14 H -0.219 1.219 15 H -0.215 1.215 16 C -0.215 4.215 17 C -0.223 4.223 18 C -0.062 4.062 19 C -0.656 4.656 20 H 0.167 0.833 21 C -0.203 4.203 22 S 2.598 3.402 23 O -0.967 6.967 24 O -0.967 6.967 25 H 0.094 0.906 26 H 0.095 0.905 27 H 0.092 0.908 28 H 0.114 0.886 29 H 0.077 0.923 30 H 0.072 0.928 31 H 0.046 0.954 32 H 0.075 0.925 33 H 0.094 0.906 34 H 0.111 0.889 35 H 0.097 0.903 36 H 0.075 0.925 37 H 0.072 0.928 38 H 0.122 0.878 39 H 0.095 0.905 40 H 0.114 0.886 41 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 5.362 3.067 -9.473 11.309 hybrid contribution 1.680 -0.609 0.565 1.874 sum 7.042 2.458 -8.908 11.619 Atomic orbital electron populations 1.21549 0.89140 1.04590 1.03873 1.29905 1.07920 1.12680 1.14838 0.82163 1.21913 0.97458 0.89611 0.97496 1.60760 1.58779 1.01116 1.05454 1.21480 0.95304 0.96586 0.87962 1.19180 0.94781 0.86601 0.98554 1.21297 0.92182 1.47367 0.96531 0.93991 1.26561 1.08434 0.93649 0.93143 1.70771 1.16291 1.47015 1.23864 0.83131 0.72212 0.76538 0.75545 1.20072 1.21859 1.21472 1.22960 1.00099 1.01372 0.97113 1.22653 1.00888 1.07147 0.91649 1.21980 0.96279 1.00492 0.87443 1.29877 1.12593 1.19645 1.03462 0.83261 1.21695 1.01701 1.00532 0.96370 1.08314 0.74966 0.79562 0.77347 1.93508 1.75003 1.79903 1.48328 1.93505 1.29027 1.86624 1.87495 0.90570 0.90490 0.90760 0.88590 0.92258 0.92842 0.95440 0.92481 0.90629 0.88861 0.90292 0.92507 0.92753 0.87826 0.90520 0.88573 0.90194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.55 8.79 71.98 0.63 -2.92 16 2 C -0.54 -13.40 3.42 30.66 0.10 -13.30 16 3 H 0.16 3.05 8.14 -2.38 -0.02 3.04 16 4 C 0.06 1.76 4.88 86.44 0.42 2.19 16 5 N -0.54 -17.45 3.24 -897.79 -2.91 -20.35 16 6 C 0.11 4.27 4.83 86.31 0.42 4.69 16 7 C 0.01 0.41 0.73 -52.92 -0.04 0.38 16 8 C -0.54 -26.62 8.55 25.60 0.22 -26.40 16 9 H 0.04 2.14 7.82 -2.91 -0.02 2.12 16 10 C -0.02 -0.98 5.37 84.65 0.45 -0.53 16 11 N -0.94 -52.79 13.41 21.45 0.29 -52.50 16 12 Si 1.10 48.45 29.91 68.60 2.05 50.50 16 13 H -0.28 -11.36 7.11 99.48 0.71 -10.65 16 14 H -0.29 -12.88 7.11 99.48 0.71 -12.17 16 15 H -0.29 -12.53 7.11 99.48 0.71 -11.83 16 16 C -0.18 -6.66 8.22 30.60 0.25 -6.40 16 17 C -0.19 -7.82 8.69 30.60 0.27 -7.56 16 18 C 0.07 1.91 4.54 86.45 0.39 2.30 16 19 C -0.54 -13.94 2.83 30.66 0.09 -13.85 16 20 H 0.15 3.86 7.38 -2.38 -0.02 3.84 16 21 C -0.14 -3.05 9.19 71.98 0.66 -2.39 16 22 S 2.41 65.68 4.28 -56.49 -0.24 65.44 16 23 O -0.97 -30.95 17.70 -127.41 -2.26 -33.21 16 24 O -0.97 -30.38 18.06 -127.41 -2.30 -32.68 16 25 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 26 H 0.08 1.81 7.96 -2.39 -0.02 1.79 16 27 H 0.07 2.22 6.46 -2.39 -0.02 2.20 16 28 H 0.10 2.66 7.69 -2.39 -0.02 2.64 16 29 H 0.06 1.47 7.93 -2.39 -0.02 1.46 16 30 H 0.05 2.21 7.28 -2.39 -0.02 2.20 16 31 H 0.03 0.93 8.03 -2.39 -0.02 0.91 16 32 H 0.26 14.71 6.28 -92.71 -0.58 14.12 16 33 H 0.08 2.89 8.14 -2.39 -0.02 2.87 16 34 H 0.09 2.94 7.71 -2.39 -0.02 2.92 16 35 H 0.08 3.05 8.14 -2.39 -0.02 3.03 16 36 H 0.06 2.71 8.14 -2.39 -0.02 2.69 16 37 H 0.05 1.42 7.93 -2.39 -0.02 1.40 16 38 H 0.10 3.12 5.15 -2.39 -0.01 3.11 16 39 H 0.08 1.52 8.14 -2.38 -0.02 1.50 16 40 H 0.10 1.80 8.14 -2.39 -0.02 1.78 16 41 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 Total: -1.00 -63.80 330.70 -0.31 -64.12 By element: Atomic # 1 Polarization: 21.30 SS G_CDS: 1.18 Total: 22.49 kcal Atomic # 6 Polarization: -67.68 SS G_CDS: 3.87 Total: -63.81 kcal Atomic # 7 Polarization: -70.23 SS G_CDS: -2.62 Total: -72.85 kcal Atomic # 8 Polarization: -61.33 SS G_CDS: -4.56 Total: -65.89 kcal Atomic # 14 Polarization: 48.45 SS G_CDS: 2.05 Total: 50.50 kcal Atomic # 16 Polarization: 65.68 SS G_CDS: -0.24 Total: 65.44 kcal Total: -63.80 -0.31 -64.12 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000400966850.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.023 kcal (2) G-P(sol) polarization free energy of solvation -63.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.115 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds