Wall clock time and date at job start Tue Mar 31 2020 06:15:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.46821 * 2 1 4 4 C 1.50700 * 109.46967 * 119.99579 * 2 1 3 5 5 H 1.08005 * 119.99261 * 120.00330 * 4 2 1 6 6 C 1.37869 * 120.00386 * 300.00030 * 4 2 1 7 7 N 1.31517 * 119.99909 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 120.00323 * 180.02562 * 6 4 2 9 9 H 1.48506 * 109.47023 * 89.99660 * 8 6 4 10 10 H 1.48498 * 109.47363 * 210.00159 * 8 6 4 11 11 H 1.48504 * 109.46776 * 330.00368 * 8 6 4 12 12 N 1.46499 * 109.46869 * 239.99690 * 2 1 3 13 13 S 1.65603 * 119.99608 * 95.00364 * 12 2 1 14 14 O 1.42105 * 104.27750 * 308.92289 * 13 12 2 15 15 O 1.42106 * 104.27392 * 181.06917 * 13 12 2 16 16 C 1.81401 * 104.45363 * 64.99745 * 13 12 2 17 17 C 1.53000 * 109.47261 * 179.97438 * 16 13 12 18 18 C 1.55922 * 116.52805 * 61.55977 * 17 16 13 19 19 C 1.54585 * 104.64414 * 160.39673 * 18 17 16 20 20 C 1.55920 * 104.64132 * 359.97438 * 19 18 17 21 21 C 1.55928 * 104.49886 * 70.27896 * 20 19 18 22 22 C 1.54578 * 104.64489 * 289.72161 * 21 20 19 23 23 C 1.56945 * 116.22397 * 179.97438 * 17 16 13 24 24 H 1.08996 * 109.47414 * 59.99884 * 1 2 3 25 25 H 1.09001 * 109.46821 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47237 * 299.99931 * 1 2 3 27 27 H 0.97001 * 119.99903 * 180.02562 * 7 6 4 28 28 H 0.97001 * 120.00202 * 274.99540 * 12 2 1 29 29 H 1.09003 * 109.47039 * 59.99627 * 16 13 12 30 30 H 1.09000 * 109.46923 * 300.00107 * 16 13 12 31 31 H 1.09001 * 110.40440 * 279.18802 * 18 17 16 32 32 H 1.09007 * 110.40324 * 41.49078 * 18 17 16 33 33 H 1.09005 * 110.39929 * 241.20869 * 19 18 17 34 34 H 1.08993 * 110.40383 * 118.79082 * 19 18 17 35 35 H 1.09003 * 116.53402 * 199.60701 * 20 19 18 36 36 H 1.08998 * 110.40217 * 48.51507 * 21 20 19 37 37 H 1.08998 * 110.40153 * 170.92835 * 21 20 19 38 38 H 1.08996 * 110.40543 * 241.20951 * 22 21 20 39 39 H 1.09001 * 110.50060 * 118.83738 * 22 21 20 40 40 H 1.09000 * 112.02783 * 62.88137 * 23 17 16 41 41 H 1.09002 * 112.09669 * 296.37729 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6533 -1.5884 1.1314 6 6 1.6993 -0.2393 2.4827 7 7 0.9436 0.8303 2.6034 8 14 2.3225 -1.1193 4.0080 9 1 3.6305 -0.5438 4.4118 10 1 1.3444 -0.9488 5.1123 11 1 2.4881 -2.5652 3.7122 12 7 2.0183 -0.6907 -1.1961 13 16 2.4121 0.1771 -2.5505 14 8 1.2750 0.9966 -2.7846 15 8 2.8122 -0.8077 -3.4936 16 6 3.8313 1.1872 -2.0441 17 6 4.2941 2.0444 -3.2240 18 6 3.2624 3.0685 -3.7878 19 6 4.1160 4.0929 -4.5698 20 6 5.5831 3.5916 -4.4042 21 6 5.6494 2.2891 -5.2589 22 6 4.7958 1.2647 -4.4770 23 6 5.5212 2.9860 -2.9579 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 0.7096 1.1620 3.4844 28 1 2.1110 -1.6562 -1.1948 29 1 4.6459 0.5362 -1.7268 30 1 3.5400 1.8342 -1.2167 31 1 2.5593 2.5710 -4.4558 32 1 2.7294 3.5586 -2.9730 33 1 4.0041 5.0881 -4.1394 34 1 3.8327 4.0991 -5.6222 35 1 6.3710 4.3222 -4.5873 36 1 5.2247 2.4615 -6.2478 37 1 6.6790 1.9411 -5.3420 38 1 5.4056 0.4131 -4.1756 39 1 3.9513 0.9318 -5.0804 40 1 6.4220 2.4239 -2.7113 41 1 5.3008 3.7442 -2.2064 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408237635.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:33 Heat of formation + Delta-G solvation = -86.100515 kcal Electronic energy + Delta-G solvation = -22132.705262 eV Core-core repulsion = 18945.882611 eV Total energy + Delta-G solvation = -3186.822651 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 287.134 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.32111 -36.52614 -35.47819 -35.26453 -32.21055 -31.83836 -30.49943 -28.28712 -27.87441 -25.97896 -25.22878 -22.20485 -20.95335 -19.86228 -19.06481 -18.27006 -17.41284 -16.29822 -15.91852 -15.58326 -15.21268 -15.07647 -14.99048 -14.65767 -13.66207 -12.98363 -12.61789 -12.59433 -12.57959 -12.22393 -11.86376 -11.77947 -11.66369 -11.47512 -11.41602 -11.18917 -11.12633 -11.01505 -11.00661 -10.92174 -10.91322 -10.65073 -10.55565 -10.27100 -10.13309 -9.89823 -9.86890 -9.16107 -8.63399 -8.26974 -6.16756 -4.25746 0.89441 3.21542 3.29176 3.31526 3.51085 4.22331 4.29910 4.32052 4.32824 4.42692 4.77809 4.92798 5.05645 5.08479 5.14610 5.30000 5.34403 5.37550 5.40943 5.60848 5.63533 5.75767 5.85037 5.94685 5.98669 6.04009 6.06886 6.15054 6.22954 6.29610 6.30272 6.38369 6.83222 7.08277 7.11176 7.56710 7.70223 7.82292 8.02529 8.26475 8.78551 9.41365 10.88642 Molecular weight = 287.13amu Principal moments of inertia in cm(-1) A = 0.023805 B = 0.004914 C = 0.004637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1175.946546 B = 5696.681276 C = 6036.442844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.273 3.727 3 H 0.038 0.962 4 C -0.529 4.529 5 H 0.064 0.936 6 C 0.064 3.936 7 N -0.886 5.886 8 Si 0.900 3.100 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.273 1.273 12 N -1.106 6.106 13 S 2.608 3.392 14 O -0.959 6.959 15 O -0.980 6.980 16 C -0.602 4.602 17 C -0.067 4.067 18 C -0.131 4.131 19 C -0.116 4.116 20 C -0.107 4.107 21 C -0.117 4.117 22 C -0.131 4.131 23 C -0.108 4.108 24 H 0.027 0.973 25 H 0.031 0.969 26 H 0.090 0.910 27 H 0.265 0.735 28 H 0.408 0.592 29 H 0.133 0.867 30 H 0.138 0.862 31 H 0.071 0.929 32 H 0.077 0.923 33 H 0.065 0.935 34 H 0.066 0.934 35 H 0.099 0.901 36 H 0.066 0.934 37 H 0.064 0.936 38 H 0.073 0.927 39 H 0.071 0.929 40 H 0.071 0.929 41 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.599 4.882 -11.196 14.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.169 3.831 3 H 0.055 0.945 4 C -0.568 4.568 5 H 0.082 0.918 6 C -0.139 4.139 7 N -0.524 5.524 8 Si 0.727 3.273 9 H -0.206 1.206 10 H -0.211 1.211 11 H -0.198 1.198 12 N -0.866 5.866 13 S 2.700 3.300 14 O -0.949 6.949 15 O -0.971 6.971 16 C -0.730 4.730 17 C -0.069 4.069 18 C -0.169 4.169 19 C -0.154 4.154 20 C -0.126 4.126 21 C -0.154 4.154 22 C -0.169 4.169 23 C -0.146 4.146 24 H 0.046 0.954 25 H 0.050 0.950 26 H 0.108 0.892 27 H 0.075 0.925 28 H 0.241 0.759 29 H 0.151 0.849 30 H 0.156 0.844 31 H 0.090 0.910 32 H 0.096 0.904 33 H 0.084 0.916 34 H 0.084 0.916 35 H 0.117 0.883 36 H 0.084 0.916 37 H 0.083 0.917 38 H 0.092 0.908 39 H 0.090 0.910 40 H 0.090 0.910 41 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 8.028 5.160 -11.890 15.246 hybrid contribution 0.800 -0.690 1.578 1.899 sum 8.828 4.470 -10.312 14.292 Atomic orbital electron populations 1.22219 0.98090 0.99930 1.01474 1.18506 0.91678 0.91811 0.81084 0.94472 1.21327 1.32096 1.13329 0.90081 0.91751 1.24933 0.94794 0.95022 0.99117 1.69885 1.35942 1.22599 1.23976 0.86473 0.78548 0.80028 0.82219 1.20603 1.21065 1.19791 1.55633 1.81094 1.18465 1.31382 1.04840 0.76347 0.75067 0.73789 1.93573 1.45729 1.71195 1.84392 1.93523 1.84818 1.57869 1.60862 1.30237 1.21582 1.14115 1.07024 1.22348 0.97184 0.95045 0.92305 1.22867 0.96883 0.96752 1.00382 1.22578 0.94258 0.98430 1.00090 1.23563 0.96892 0.96666 0.95451 1.22592 0.99694 0.94803 0.98349 1.22870 1.00477 0.97945 0.95609 1.23526 0.96821 0.97749 0.96521 0.95387 0.94991 0.89156 0.92527 0.75921 0.84889 0.84355 0.90986 0.90400 0.91598 0.91571 0.88305 0.91565 0.91721 0.90777 0.90999 0.91013 0.90809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.85 9.29 37.16 0.35 -3.50 16 2 C 0.27 6.53 2.66 -69.08 -0.18 6.34 16 3 H 0.04 0.91 7.15 -51.93 -0.37 0.54 16 4 C -0.53 -13.51 8.76 -34.44 -0.30 -13.81 16 5 H 0.06 1.59 7.81 -52.48 -0.41 1.18 16 6 C 0.06 1.68 5.30 -17.82 -0.09 1.58 16 7 N -0.89 -23.91 11.32 55.43 0.63 -23.29 16 8 Si 0.90 20.14 29.54 -169.99 -5.02 15.12 16 9 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 10 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 11 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 12 N -1.11 -22.46 5.35 -5.88 -0.03 -22.50 16 13 S 2.61 48.35 4.96 -107.50 -0.53 47.82 16 14 O -0.96 -20.30 16.16 -57.54 -0.93 -21.23 16 15 O -0.98 -19.22 17.07 -57.54 -0.98 -20.20 16 16 C -0.60 -9.22 5.84 37.16 0.22 -9.01 16 17 C -0.07 -0.92 1.04 -149.28 -0.16 -1.08 16 18 C -0.13 -1.79 4.95 -24.34 -0.12 -1.91 16 19 C -0.12 -1.25 6.21 -24.34 -0.15 -1.40 16 20 C -0.11 -1.07 5.19 -85.37 -0.44 -1.52 16 21 C -0.12 -1.21 6.21 -24.34 -0.15 -1.36 16 22 C -0.13 -1.71 4.90 -24.37 -0.12 -1.83 16 23 C -0.11 -1.24 6.11 -22.47 -0.14 -1.38 16 24 H 0.03 0.65 7.42 -51.93 -0.39 0.26 16 25 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 26 H 0.09 2.36 6.07 -51.93 -0.32 2.04 16 27 H 0.26 6.80 8.31 -40.82 -0.34 6.46 16 28 H 0.41 7.72 8.79 -34.48 -0.30 7.41 16 29 H 0.13 1.82 8.14 -51.92 -0.42 1.40 16 30 H 0.14 2.14 7.44 -51.92 -0.39 1.76 16 31 H 0.07 1.03 7.57 -51.93 -0.39 0.64 16 32 H 0.08 1.09 8.14 -51.92 -0.42 0.67 16 33 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 34 H 0.07 0.65 7.84 -51.93 -0.41 0.24 16 35 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.07 0.63 7.84 -51.93 -0.41 0.22 16 37 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 39 H 0.07 0.99 7.53 -51.93 -0.39 0.60 16 40 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 41 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 LS Contribution 329.24 15.07 4.96 4.96 Total: -1.00 -29.88 329.24 -9.91 -39.79 By element: Atomic # 1 Polarization: 15.08 SS G_CDS: -6.71 Total: 8.38 kcal Atomic # 6 Polarization: -27.56 SS G_CDS: -1.30 Total: -28.86 kcal Atomic # 7 Polarization: -46.38 SS G_CDS: 0.60 Total: -45.78 kcal Atomic # 8 Polarization: -39.52 SS G_CDS: -1.91 Total: -41.43 kcal Atomic # 14 Polarization: 20.14 SS G_CDS: -5.02 Total: 15.12 kcal Atomic # 16 Polarization: 48.35 SS G_CDS: -0.53 Total: 47.82 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -29.88 -9.91 -39.79 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408237635.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.311 kcal (2) G-P(sol) polarization free energy of solvation -29.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.790 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds