Wall clock time and date at job start Tue Mar 31 2020 06:15:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.46821 * 2 1 4 4 C 1.50700 * 109.46967 * 119.99579 * 2 1 3 5 5 H 1.08005 * 119.99261 * 120.00330 * 4 2 1 6 6 C 1.37869 * 120.00386 * 300.00030 * 4 2 1 7 7 N 1.31517 * 119.99909 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 120.00323 * 180.02562 * 6 4 2 9 9 H 1.48506 * 109.47023 * 89.99660 * 8 6 4 10 10 H 1.48498 * 109.47363 * 210.00159 * 8 6 4 11 11 H 1.48504 * 109.46776 * 330.00368 * 8 6 4 12 12 N 1.46499 * 109.46869 * 239.99690 * 2 1 3 13 13 S 1.65603 * 119.99608 * 95.00364 * 12 2 1 14 14 O 1.42105 * 104.27750 * 308.92289 * 13 12 2 15 15 O 1.42106 * 104.27392 * 181.06917 * 13 12 2 16 16 C 1.81401 * 104.45363 * 64.99745 * 13 12 2 17 17 C 1.53000 * 109.47261 * 179.97438 * 16 13 12 18 18 C 1.55922 * 116.52805 * 61.55977 * 17 16 13 19 19 C 1.54585 * 104.64414 * 160.39673 * 18 17 16 20 20 C 1.55920 * 104.64132 * 359.97438 * 19 18 17 21 21 C 1.55928 * 104.49886 * 70.27896 * 20 19 18 22 22 C 1.54578 * 104.64489 * 289.72161 * 21 20 19 23 23 C 1.56945 * 116.22397 * 179.97438 * 17 16 13 24 24 H 1.08996 * 109.47414 * 59.99884 * 1 2 3 25 25 H 1.09001 * 109.46821 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47237 * 299.99931 * 1 2 3 27 27 H 0.97001 * 119.99903 * 180.02562 * 7 6 4 28 28 H 0.97001 * 120.00202 * 274.99540 * 12 2 1 29 29 H 1.09003 * 109.47039 * 59.99627 * 16 13 12 30 30 H 1.09000 * 109.46923 * 300.00107 * 16 13 12 31 31 H 1.09001 * 110.40440 * 279.18802 * 18 17 16 32 32 H 1.09007 * 110.40324 * 41.49078 * 18 17 16 33 33 H 1.09005 * 110.39929 * 241.20869 * 19 18 17 34 34 H 1.08993 * 110.40383 * 118.79082 * 19 18 17 35 35 H 1.09003 * 116.53402 * 199.60701 * 20 19 18 36 36 H 1.08998 * 110.40217 * 48.51507 * 21 20 19 37 37 H 1.08998 * 110.40153 * 170.92835 * 21 20 19 38 38 H 1.08996 * 110.40543 * 241.20951 * 22 21 20 39 39 H 1.09001 * 110.50060 * 118.83738 * 22 21 20 40 40 H 1.09000 * 112.02783 * 62.88137 * 23 17 16 41 41 H 1.09002 * 112.09669 * 296.37729 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6533 -1.5884 1.1314 6 6 1.6993 -0.2393 2.4827 7 7 0.9436 0.8303 2.6034 8 14 2.3225 -1.1193 4.0080 9 1 3.6305 -0.5438 4.4118 10 1 1.3444 -0.9488 5.1123 11 1 2.4881 -2.5652 3.7122 12 7 2.0183 -0.6907 -1.1961 13 16 2.4121 0.1771 -2.5505 14 8 1.2750 0.9966 -2.7846 15 8 2.8122 -0.8077 -3.4936 16 6 3.8313 1.1872 -2.0441 17 6 4.2941 2.0444 -3.2240 18 6 3.2624 3.0685 -3.7878 19 6 4.1160 4.0929 -4.5698 20 6 5.5831 3.5916 -4.4042 21 6 5.6494 2.2891 -5.2589 22 6 4.7958 1.2647 -4.4770 23 6 5.5212 2.9860 -2.9579 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 0.7096 1.1620 3.4844 28 1 2.1110 -1.6562 -1.1948 29 1 4.6459 0.5362 -1.7268 30 1 3.5400 1.8342 -1.2167 31 1 2.5593 2.5710 -4.4558 32 1 2.7294 3.5586 -2.9730 33 1 4.0041 5.0881 -4.1394 34 1 3.8327 4.0991 -5.6222 35 1 6.3710 4.3222 -4.5873 36 1 5.2247 2.4615 -6.2478 37 1 6.6790 1.9411 -5.3420 38 1 5.4056 0.4131 -4.1756 39 1 3.9513 0.9318 -5.0804 40 1 6.4220 2.4239 -2.7113 41 1 5.3008 3.7442 -2.2064 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000408237635.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:33 Heat of formation + Delta-G solvation = -105.209259 kcal Electronic energy + Delta-G solvation = -22133.533880 eV Core-core repulsion = 18945.882611 eV Total energy + Delta-G solvation = -3187.651268 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 287.134 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.25707 -38.13176 -37.26343 -36.89798 -34.11703 -32.92693 -31.41961 -30.13371 -28.82592 -27.24765 -27.05275 -23.13010 -22.84529 -20.79872 -20.43503 -19.48650 -19.09543 -17.96789 -17.23284 -17.15559 -16.59837 -16.28363 -16.15183 -15.93650 -15.36583 -14.55860 -14.15934 -14.05766 -13.55752 -13.51632 -13.47252 -13.26093 -13.09573 -12.97685 -12.83501 -12.80186 -12.62694 -12.35263 -12.24467 -12.13380 -12.06423 -11.98608 -11.87952 -11.78336 -11.60773 -11.21367 -10.92141 -10.80912 -10.57951 -10.04635 -8.14195 -6.29607 -0.59787 1.45839 1.48174 1.57423 1.94422 2.44455 2.83185 3.15084 3.21715 3.31814 3.42934 3.46944 3.85840 4.05378 4.17706 4.29054 4.34332 4.46426 4.48123 4.52562 4.56310 4.61459 4.81656 4.88826 4.90441 5.04357 5.07552 5.10231 5.14806 5.15364 5.18595 5.22400 5.32989 5.35693 5.48645 5.58254 5.72142 6.00368 6.08395 6.41115 6.82294 7.40999 8.91094 Molecular weight = 287.13amu Principal moments of inertia in cm(-1) A = 0.023805 B = 0.004914 C = 0.004637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1175.946546 B = 5696.681276 C = 6036.442844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.276 3.724 3 H 0.027 0.973 4 C -0.541 4.541 5 H 0.070 0.930 6 C 0.018 3.982 7 N -0.915 5.915 8 Si 0.963 3.037 9 H -0.273 1.273 10 H -0.286 1.286 11 H -0.268 1.268 12 N -1.109 6.109 13 S 2.609 3.391 14 O -0.992 6.992 15 O -0.992 6.992 16 C -0.583 4.583 17 C -0.083 4.083 18 C -0.141 4.141 19 C -0.115 4.115 20 C -0.094 4.094 21 C -0.114 4.114 22 C -0.139 4.139 23 C -0.105 4.105 24 H 0.027 0.973 25 H 0.033 0.967 26 H 0.071 0.929 27 H 0.266 0.734 28 H 0.413 0.587 29 H 0.154 0.846 30 H 0.137 0.863 31 H 0.054 0.946 32 H 0.064 0.936 33 H 0.076 0.924 34 H 0.075 0.925 35 H 0.128 0.872 36 H 0.074 0.926 37 H 0.082 0.918 38 H 0.075 0.925 39 H 0.054 0.946 40 H 0.083 0.917 41 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.014 5.287 -11.422 16.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.171 3.829 3 H 0.045 0.955 4 C -0.581 4.581 5 H 0.088 0.912 6 C -0.182 4.182 7 N -0.553 5.553 8 Si 0.788 3.212 9 H -0.199 1.199 10 H -0.212 1.212 11 H -0.192 1.192 12 N -0.868 5.868 13 S 2.706 3.294 14 O -0.982 6.982 15 O -0.983 6.983 16 C -0.715 4.715 17 C -0.085 4.085 18 C -0.179 4.179 19 C -0.152 4.152 20 C -0.112 4.112 21 C -0.151 4.151 22 C -0.176 4.176 23 C -0.144 4.144 24 H 0.046 0.954 25 H 0.052 0.948 26 H 0.090 0.910 27 H 0.075 0.925 28 H 0.246 0.754 29 H 0.172 0.828 30 H 0.155 0.845 31 H 0.073 0.927 32 H 0.083 0.917 33 H 0.095 0.905 34 H 0.094 0.906 35 H 0.146 0.854 36 H 0.093 0.907 37 H 0.101 0.899 38 H 0.093 0.907 39 H 0.072 0.928 40 H 0.102 0.898 41 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 10.410 5.525 -12.138 16.918 hybrid contribution 0.035 -0.806 1.596 1.788 sum 10.445 4.719 -10.543 15.573 Atomic orbital electron populations 1.22149 0.98926 0.99689 1.00482 1.18269 0.91084 0.91545 0.82013 0.95518 1.21623 1.32111 1.13547 0.90796 0.91234 1.25698 0.94947 0.95648 1.01908 1.70002 1.36900 1.23818 1.24607 0.85488 0.78027 0.79077 0.78614 1.19900 1.21165 1.19245 1.55494 1.81817 1.18935 1.30546 1.04667 0.76806 0.74803 0.73131 1.93526 1.48409 1.71531 1.84759 1.93501 1.85043 1.58703 1.61022 1.30025 1.19711 1.13842 1.07874 1.22502 0.98479 0.95496 0.91985 1.22943 0.97215 0.97575 1.00139 1.22608 0.94432 0.97943 1.00216 1.23630 0.96858 0.96840 0.93915 1.22618 1.00107 0.94109 0.98310 1.22943 1.00418 0.98877 0.95384 1.23569 0.95724 0.97265 0.97819 0.95433 0.94791 0.91013 0.92484 0.75368 0.82811 0.84473 0.92704 0.91737 0.90489 0.90608 0.85383 0.90749 0.89925 0.90668 0.92765 0.89833 0.90676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -7.63 9.29 71.98 0.67 -6.97 16 2 C 0.28 13.36 2.66 44.25 0.12 13.48 16 3 H 0.03 1.35 7.15 -2.39 -0.02 1.33 16 4 C -0.54 -27.54 8.76 25.60 0.22 -27.32 16 5 H 0.07 3.39 7.81 -2.91 -0.02 3.36 16 6 C 0.02 0.95 5.30 84.65 0.45 1.40 16 7 N -0.91 -49.72 11.32 21.44 0.24 -49.47 16 8 Si 0.96 40.81 29.54 68.60 2.03 42.84 16 9 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 10 H -0.29 -12.08 7.11 99.48 0.71 -11.38 16 11 H -0.27 -11.05 7.11 99.48 0.71 -10.34 16 12 N -1.11 -45.49 5.35 -172.52 -0.92 -46.41 16 13 S 2.61 98.16 4.96 -56.49 -0.28 97.88 16 14 O -0.99 -43.43 16.16 -127.65 -2.06 -45.50 16 15 O -0.99 -39.18 17.07 -127.65 -2.18 -41.36 16 16 C -0.58 -17.50 5.84 71.98 0.42 -17.08 16 17 C -0.08 -2.18 1.04 -48.79 -0.05 -2.23 16 18 C -0.14 -3.80 4.95 32.15 0.16 -3.64 16 19 C -0.11 -2.21 6.21 32.14 0.20 -2.02 16 20 C -0.09 -1.55 5.19 -7.39 -0.04 -1.59 16 21 C -0.11 -2.01 6.21 32.14 0.20 -1.81 16 22 C -0.14 -3.40 4.90 32.12 0.16 -3.25 16 23 C -0.11 -2.13 6.11 33.35 0.20 -1.92 16 24 H 0.03 1.32 7.42 -2.39 -0.02 1.30 16 25 H 0.03 1.61 8.14 -2.39 -0.02 1.59 16 26 H 0.07 3.84 6.07 -2.39 -0.01 3.83 16 27 H 0.27 13.73 8.31 -92.71 -0.77 12.96 16 28 H 0.41 15.70 8.79 -96.74 -0.85 14.85 16 29 H 0.15 3.96 8.14 -2.39 -0.02 3.94 16 30 H 0.14 4.22 7.44 -2.39 -0.02 4.20 16 31 H 0.05 1.62 7.57 -2.39 -0.02 1.60 16 32 H 0.06 1.85 8.14 -2.38 -0.02 1.84 16 33 H 0.08 1.32 8.14 -2.38 -0.02 1.30 16 34 H 0.08 1.32 7.84 -2.39 -0.02 1.30 16 35 H 0.13 1.46 8.14 -2.39 -0.02 1.44 16 36 H 0.07 1.21 7.84 -2.39 -0.02 1.19 16 37 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 38 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 39 H 0.05 1.49 7.53 -2.39 -0.02 1.47 16 40 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 41 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 Total: -1.00 -63.48 329.24 -0.30 -63.78 By element: Atomic # 1 Polarization: 31.02 SS G_CDS: 0.16 Total: 31.18 kcal Atomic # 6 Polarization: -55.65 SS G_CDS: 2.71 Total: -52.94 kcal Atomic # 7 Polarization: -95.20 SS G_CDS: -0.68 Total: -95.88 kcal Atomic # 8 Polarization: -82.61 SS G_CDS: -4.24 Total: -86.85 kcal Atomic # 14 Polarization: 40.81 SS G_CDS: 2.03 Total: 42.84 kcal Atomic # 16 Polarization: 98.16 SS G_CDS: -0.28 Total: 97.88 kcal Total: -63.48 -0.30 -63.78 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408237635.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.430 kcal (2) G-P(sol) polarization free energy of solvation -63.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.779 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds