Wall clock time and date at job start Tue Mar 31 2020 06:15:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.46939 * 2 1 4 4 C 1.50704 * 109.47299 * 239.99669 * 2 1 3 5 5 H 1.07998 * 119.99909 * 239.99846 * 4 2 1 6 6 C 1.37875 * 119.99602 * 60.00212 * 4 2 1 7 7 N 1.31512 * 120.00351 * 359.97438 * 6 4 2 8 8 Si 1.86804 * 119.99599 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47433 * 59.99655 * 8 6 4 10 10 H 1.48501 * 109.46986 * 179.97438 * 8 6 4 11 11 H 1.48502 * 109.47188 * 299.99598 * 8 6 4 12 12 N 1.46500 * 109.47005 * 120.00011 * 2 1 3 13 13 S 1.65605 * 119.99536 * 265.00124 * 12 2 1 14 14 O 1.42096 * 104.27633 * 308.92668 * 13 12 2 15 15 O 1.42102 * 104.27347 * 181.07325 * 13 12 2 16 16 C 1.81398 * 104.44925 * 65.00165 * 13 12 2 17 17 C 1.53006 * 109.46988 * 179.97438 * 16 13 12 18 18 C 1.55922 * 115.92074 * 62.05975 * 17 16 13 19 19 C 1.54585 * 104.64414 * 160.03356 * 18 17 16 20 20 C 1.55920 * 104.64132 * 359.97438 * 19 18 17 21 21 C 1.55928 * 104.49886 * 70.27896 * 20 19 18 22 22 C 1.55704 * 104.74512 * 289.07183 * 21 20 19 23 23 C 1.56945 * 116.22369 * 179.97438 * 17 16 13 24 24 H 1.09003 * 109.46939 * 179.97438 * 1 2 3 25 25 H 1.08989 * 109.47355 * 300.00351 * 1 2 3 26 26 H 1.09004 * 109.46821 * 60.00949 * 1 2 3 27 27 H 0.97005 * 119.99940 * 180.02562 * 7 6 4 28 28 H 0.96998 * 120.00775 * 85.00488 * 12 2 1 29 29 H 1.09000 * 109.47209 * 59.99851 * 16 13 12 30 30 H 1.09003 * 109.47257 * 299.99510 * 16 13 12 31 31 H 1.09001 * 110.40440 * 278.82485 * 18 17 16 32 32 H 1.09007 * 110.40324 * 41.12762 * 18 17 16 33 33 H 1.09005 * 110.39929 * 241.20869 * 19 18 17 34 34 H 1.08993 * 110.40383 * 118.79082 * 19 18 17 35 35 H 1.09003 * 116.53402 * 199.60701 * 20 19 18 36 36 H 1.08998 * 110.40217 * 48.51507 * 21 20 19 37 37 H 1.08998 * 110.40153 * 170.92835 * 21 20 19 38 38 H 1.08999 * 111.46251 * 241.94843 * 22 21 20 39 39 H 1.08993 * 109.94532 * 119.24009 * 22 21 20 40 40 H 1.09000 * 112.02783 * 63.64960 * 23 17 16 41 41 H 1.09002 * 112.09669 * 297.14553 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9429 0.8296 -2.6034 8 14 2.3215 -1.1205 -4.0079 9 1 1.8260 -2.5204 -4.0076 10 1 1.8261 -0.4208 -5.2204 11 1 3.8065 -1.1211 -4.0081 12 7 2.0183 -0.6906 1.1962 13 16 2.4121 0.1773 2.5505 14 8 3.2874 1.1907 2.0750 15 8 2.8606 -0.8028 3.4766 16 6 0.8406 0.8990 3.0984 17 6 1.0749 1.7342 4.3588 18 6 2.0326 2.9543 4.1996 19 6 1.6947 3.8748 5.3947 20 6 0.5643 3.1245 6.1628 21 6 1.2772 1.8940 6.8024 22 6 1.6036 0.9572 5.6023 23 6 -0.1886 2.4356 4.9708 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8898 26 1 -0.3633 0.5137 -0.8901 27 1 0.7082 1.1607 -3.4845 28 1 2.1111 -1.6561 1.1950 29 1 0.1315 0.1010 3.3184 30 1 0.4385 1.5353 2.3100 31 1 3.0722 2.6307 4.2513 32 1 1.8415 3.4670 3.2568 33 1 1.3361 4.8413 5.0403 34 1 2.5681 4.0038 6.0338 35 1 -0.0474 3.7242 6.8369 36 1 2.1890 2.2056 7.3118 37 1 0.6080 1.3855 7.4964 38 1 1.0950 -0.0023 5.6955 39 1 2.6810 0.8096 5.5282 40 1 -0.9290 1.7145 5.3171 41 1 -0.6245 3.1642 4.2871 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408237636.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:36 Heat of formation + Delta-G solvation = -84.792874 kcal Electronic energy + Delta-G solvation = -22131.916796 eV Core-core repulsion = 18945.150849 eV Total energy + Delta-G solvation = -3186.765947 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 287.134 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.29901 -36.52089 -35.49908 -35.29541 -32.18982 -31.89988 -30.47671 -28.30729 -27.89378 -26.13548 -25.15456 -22.25517 -20.96910 -19.85121 -19.05496 -18.33307 -17.42887 -16.25636 -15.97820 -15.63629 -15.18251 -15.07618 -14.99590 -14.64239 -13.64256 -13.10019 -12.66914 -12.62516 -12.59532 -12.19487 -11.87068 -11.83891 -11.74242 -11.46252 -11.40729 -11.19167 -11.17056 -10.99986 -10.98559 -10.93474 -10.91653 -10.68452 -10.60075 -10.37220 -10.10779 -9.93200 -9.83393 -9.21817 -8.62262 -8.27573 -6.13890 -4.20475 0.87404 3.28045 3.32329 3.34810 3.50944 4.22492 4.28028 4.29290 4.36009 4.41387 4.75017 4.90023 5.01603 5.07217 5.18904 5.28469 5.31443 5.35405 5.40256 5.56104 5.59852 5.73107 5.79720 5.91304 5.97154 6.01449 6.02569 6.13445 6.21350 6.27551 6.29356 6.36236 6.70340 6.73867 6.94904 7.54183 7.63768 7.87197 7.99352 8.25927 8.82028 9.45424 10.92554 Molecular weight = 287.13amu Principal moments of inertia in cm(-1) A = 0.032778 B = 0.004529 C = 0.004336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 854.030698 B = 6181.460816 C = 6455.609523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.264 3.736 3 H 0.051 0.949 4 C -0.520 4.520 5 H 0.064 0.936 6 C 0.064 3.936 7 N -0.890 5.890 8 Si 0.902 3.098 9 H -0.276 1.276 10 H -0.286 1.286 11 H -0.275 1.275 12 N -1.105 6.105 13 S 2.607 3.393 14 O -0.956 6.956 15 O -0.980 6.980 16 C -0.606 4.606 17 C -0.067 4.067 18 C -0.132 4.132 19 C -0.116 4.116 20 C -0.107 4.107 21 C -0.117 4.117 22 C -0.131 4.131 23 C -0.107 4.107 24 H 0.036 0.964 25 H 0.012 0.988 26 H 0.095 0.905 27 H 0.265 0.735 28 H 0.407 0.593 29 H 0.131 0.869 30 H 0.139 0.861 31 H 0.072 0.928 32 H 0.078 0.922 33 H 0.065 0.935 34 H 0.066 0.934 35 H 0.099 0.901 36 H 0.067 0.933 37 H 0.063 0.937 38 H 0.075 0.925 39 H 0.071 0.929 40 H 0.071 0.929 41 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.485 3.689 15.389 16.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.160 3.840 3 H 0.069 0.931 4 C -0.559 4.559 5 H 0.082 0.918 6 C -0.139 4.139 7 N -0.529 5.529 8 Si 0.729 3.271 9 H -0.202 1.202 10 H -0.212 1.212 11 H -0.201 1.201 12 N -0.864 5.864 13 S 2.699 3.301 14 O -0.946 6.946 15 O -0.970 6.970 16 C -0.733 4.733 17 C -0.069 4.069 18 C -0.170 4.170 19 C -0.154 4.154 20 C -0.126 4.126 21 C -0.154 4.154 22 C -0.168 4.168 23 C -0.146 4.146 24 H 0.055 0.945 25 H 0.031 0.969 26 H 0.114 0.886 27 H 0.075 0.925 28 H 0.241 0.759 29 H 0.149 0.851 30 H 0.157 0.843 31 H 0.091 0.909 32 H 0.097 0.903 33 H 0.084 0.916 34 H 0.084 0.916 35 H 0.117 0.883 36 H 0.085 0.915 37 H 0.082 0.918 38 H 0.094 0.906 39 H 0.090 0.910 40 H 0.089 0.911 41 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -2.707 4.101 15.609 16.364 hybrid contribution -0.494 -0.815 -1.085 1.444 sum -3.201 3.286 14.524 15.231 Atomic orbital electron populations 1.22408 0.98794 1.00212 1.00933 1.18619 0.90518 0.93268 0.81591 0.93131 1.21178 1.31819 1.13122 0.89821 0.91800 1.24913 0.94876 0.95026 0.99098 1.69840 1.36303 1.22670 1.24049 0.86495 0.79352 0.79560 0.81644 1.20179 1.21158 1.20072 1.55593 1.84038 1.19081 1.27736 1.04859 0.76832 0.74821 0.73633 1.93581 1.60569 1.61173 1.79308 1.93523 1.79998 1.58981 1.64495 1.30428 1.25381 1.11402 1.06094 1.22362 0.97787 0.94852 0.91889 1.22875 0.99050 0.95596 0.99444 1.22580 0.98085 0.98156 0.96546 1.23555 0.96280 0.96228 0.96489 1.22782 1.00155 0.95601 0.96900 1.23054 1.01659 0.98372 0.93757 1.23528 0.95730 0.98755 0.96586 0.94476 0.96882 0.88621 0.92524 0.75936 0.85071 0.84311 0.90935 0.90346 0.91595 0.91551 0.88289 0.91464 0.91817 0.90599 0.91044 0.91058 0.90852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.58 9.26 37.16 0.34 -3.24 16 2 C 0.26 6.31 2.80 -69.08 -0.19 6.12 16 3 H 0.05 1.32 7.48 -51.93 -0.39 0.93 16 4 C -0.52 -13.78 8.76 -34.44 -0.30 -14.09 16 5 H 0.06 1.66 7.81 -52.49 -0.41 1.25 16 6 C 0.06 1.69 5.30 -17.82 -0.09 1.60 16 7 N -0.89 -24.26 11.32 55.43 0.63 -23.63 16 8 Si 0.90 20.73 29.54 -169.99 -5.02 15.71 16 9 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 10 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 11 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 12 N -1.10 -22.50 5.35 -5.88 -0.03 -22.53 16 13 S 2.61 48.65 5.02 -107.50 -0.54 48.11 16 14 O -0.96 -21.04 16.39 -57.54 -0.94 -21.98 16 15 O -0.98 -19.27 17.07 -57.54 -0.98 -20.25 16 16 C -0.61 -8.90 5.08 37.16 0.19 -8.71 16 17 C -0.07 -0.90 1.02 -149.28 -0.15 -1.05 16 18 C -0.13 -1.79 4.92 -24.34 -0.12 -1.91 16 19 C -0.12 -1.23 6.21 -24.34 -0.15 -1.38 16 20 C -0.11 -1.04 5.19 -85.37 -0.44 -1.48 16 21 C -0.12 -1.18 6.24 -23.73 -0.15 -1.33 16 22 C -0.13 -1.66 5.00 -23.76 -0.12 -1.78 16 23 C -0.11 -1.18 6.10 -22.47 -0.14 -1.32 16 24 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 25 H 0.01 0.23 5.78 -51.94 -0.30 -0.07 16 26 H 0.10 2.32 6.07 -51.93 -0.32 2.01 16 27 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 28 H 0.41 7.71 8.79 -34.47 -0.30 7.41 16 29 H 0.13 1.66 8.14 -51.92 -0.42 1.24 16 30 H 0.14 2.03 6.77 -51.92 -0.35 1.68 16 31 H 0.07 1.05 7.57 -51.93 -0.39 0.65 16 32 H 0.08 1.10 8.14 -51.92 -0.42 0.67 16 33 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 34 H 0.07 0.65 7.84 -51.93 -0.41 0.24 16 35 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.07 0.63 7.84 -51.93 -0.41 0.22 16 37 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 38 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 39 H 0.07 0.98 7.56 -51.93 -0.39 0.58 16 40 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 41 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 LS Contribution 326.97 15.07 4.93 4.93 Total: -1.00 -30.59 326.97 -9.90 -40.49 By element: Atomic # 1 Polarization: 14.34 SS G_CDS: -6.61 Total: 7.73 kcal Atomic # 6 Polarization: -27.24 SS G_CDS: -1.33 Total: -28.57 kcal Atomic # 7 Polarization: -46.76 SS G_CDS: 0.60 Total: -46.17 kcal Atomic # 8 Polarization: -40.31 SS G_CDS: -1.92 Total: -42.23 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.71 kcal Atomic # 16 Polarization: 48.65 SS G_CDS: -0.54 Total: 48.11 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -30.59 -9.90 -40.49 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408237636.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.304 kcal (2) G-P(sol) polarization free energy of solvation -30.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.489 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds