Wall clock time and date at job start Tue Mar 31 2020 06:15:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.46939 * 2 1 4 4 C 1.50704 * 109.47299 * 239.99669 * 2 1 3 5 5 H 1.07998 * 119.99909 * 239.99846 * 4 2 1 6 6 C 1.37875 * 119.99602 * 60.00212 * 4 2 1 7 7 N 1.31512 * 120.00351 * 359.97438 * 6 4 2 8 8 Si 1.86804 * 119.99599 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47433 * 59.99655 * 8 6 4 10 10 H 1.48501 * 109.46986 * 179.97438 * 8 6 4 11 11 H 1.48502 * 109.47188 * 299.99598 * 8 6 4 12 12 N 1.46500 * 109.47005 * 120.00011 * 2 1 3 13 13 S 1.65605 * 119.99536 * 265.00124 * 12 2 1 14 14 O 1.42096 * 104.27633 * 308.92668 * 13 12 2 15 15 O 1.42102 * 104.27347 * 181.07325 * 13 12 2 16 16 C 1.81398 * 104.44925 * 65.00165 * 13 12 2 17 17 C 1.53006 * 109.46988 * 179.97438 * 16 13 12 18 18 C 1.55922 * 115.92074 * 62.05975 * 17 16 13 19 19 C 1.54585 * 104.64414 * 160.03356 * 18 17 16 20 20 C 1.55920 * 104.64132 * 359.97438 * 19 18 17 21 21 C 1.55928 * 104.49886 * 70.27896 * 20 19 18 22 22 C 1.55704 * 104.74512 * 289.07183 * 21 20 19 23 23 C 1.56945 * 116.22369 * 179.97438 * 17 16 13 24 24 H 1.09003 * 109.46939 * 179.97438 * 1 2 3 25 25 H 1.08989 * 109.47355 * 300.00351 * 1 2 3 26 26 H 1.09004 * 109.46821 * 60.00949 * 1 2 3 27 27 H 0.97005 * 119.99940 * 180.02562 * 7 6 4 28 28 H 0.96998 * 120.00775 * 85.00488 * 12 2 1 29 29 H 1.09000 * 109.47209 * 59.99851 * 16 13 12 30 30 H 1.09003 * 109.47257 * 299.99510 * 16 13 12 31 31 H 1.09001 * 110.40440 * 278.82485 * 18 17 16 32 32 H 1.09007 * 110.40324 * 41.12762 * 18 17 16 33 33 H 1.09005 * 110.39929 * 241.20869 * 19 18 17 34 34 H 1.08993 * 110.40383 * 118.79082 * 19 18 17 35 35 H 1.09003 * 116.53402 * 199.60701 * 20 19 18 36 36 H 1.08998 * 110.40217 * 48.51507 * 21 20 19 37 37 H 1.08998 * 110.40153 * 170.92835 * 21 20 19 38 38 H 1.08999 * 111.46251 * 241.94843 * 22 21 20 39 39 H 1.08993 * 109.94532 * 119.24009 * 22 21 20 40 40 H 1.09000 * 112.02783 * 63.64960 * 23 17 16 41 41 H 1.09002 * 112.09669 * 297.14553 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9429 0.8296 -2.6034 8 14 2.3215 -1.1205 -4.0079 9 1 1.8260 -2.5204 -4.0076 10 1 1.8261 -0.4208 -5.2204 11 1 3.8065 -1.1211 -4.0081 12 7 2.0183 -0.6906 1.1962 13 16 2.4121 0.1773 2.5505 14 8 3.2874 1.1907 2.0750 15 8 2.8606 -0.8028 3.4766 16 6 0.8406 0.8990 3.0984 17 6 1.0749 1.7342 4.3588 18 6 2.0326 2.9543 4.1996 19 6 1.6947 3.8748 5.3947 20 6 0.5643 3.1245 6.1628 21 6 1.2772 1.8940 6.8024 22 6 1.6036 0.9572 5.6023 23 6 -0.1886 2.4356 4.9708 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8898 26 1 -0.3633 0.5137 -0.8901 27 1 0.7082 1.1607 -3.4845 28 1 2.1111 -1.6561 1.1950 29 1 0.1315 0.1010 3.3184 30 1 0.4385 1.5353 2.3100 31 1 3.0722 2.6307 4.2513 32 1 1.8415 3.4670 3.2568 33 1 1.3361 4.8413 5.0403 34 1 2.5681 4.0038 6.0338 35 1 -0.0474 3.7242 6.8369 36 1 2.1890 2.2056 7.3118 37 1 0.6080 1.3855 7.4964 38 1 1.0950 -0.0023 5.6955 39 1 2.6810 0.8096 5.5282 40 1 -0.9290 1.7145 5.3171 41 1 -0.6245 3.1642 4.2871 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000408237636.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:35 Heat of formation + Delta-G solvation = -105.108397 kcal Electronic energy + Delta-G solvation = -22132.797744 eV Core-core repulsion = 18945.150849 eV Total energy + Delta-G solvation = -3187.646894 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 287.134 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.20891 -38.13205 -37.28321 -36.92140 -34.13300 -32.96799 -31.38048 -30.08452 -28.79660 -27.48012 -26.83988 -23.15986 -22.81003 -20.75397 -20.43991 -19.51539 -19.13578 -17.96537 -17.26010 -17.17596 -16.59241 -16.28886 -16.14805 -15.91417 -15.38253 -14.59141 -14.17590 -13.99900 -13.57695 -13.51948 -13.50195 -13.19834 -13.12798 -13.01576 -12.83778 -12.73345 -12.60484 -12.45635 -12.21814 -12.10153 -12.07276 -11.98734 -11.87030 -11.75724 -11.57972 -11.13931 -11.00046 -10.82322 -10.57914 -10.03699 -8.15935 -6.29399 -0.61284 1.44202 1.45747 1.53039 1.94747 2.43418 2.84219 3.13759 3.22315 3.31758 3.43005 3.47617 3.85318 4.05551 4.17005 4.27370 4.35251 4.47363 4.49029 4.51229 4.56035 4.61943 4.79365 4.90541 4.91608 5.00005 5.04838 5.07902 5.14546 5.15786 5.19616 5.23137 5.32705 5.36447 5.49116 5.57317 5.77392 6.04323 6.13631 6.41065 6.80165 7.39774 8.89217 Molecular weight = 287.13amu Principal moments of inertia in cm(-1) A = 0.032778 B = 0.004529 C = 0.004336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 854.030698 B = 6181.460816 C = 6455.609523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.267 3.733 3 H 0.020 0.980 4 C -0.546 4.546 5 H 0.060 0.940 6 C 0.019 3.981 7 N -0.912 5.912 8 Si 0.960 3.040 9 H -0.267 1.267 10 H -0.280 1.280 11 H -0.278 1.278 12 N -1.109 6.109 13 S 2.604 3.396 14 O -1.000 7.000 15 O -0.993 6.993 16 C -0.581 4.581 17 C -0.082 4.082 18 C -0.143 4.143 19 C -0.115 4.115 20 C -0.095 4.095 21 C -0.114 4.114 22 C -0.139 4.139 23 C -0.102 4.102 24 H 0.043 0.957 25 H 0.048 0.952 26 H 0.071 0.929 27 H 0.266 0.734 28 H 0.412 0.588 29 H 0.161 0.839 30 H 0.143 0.857 31 H 0.050 0.950 32 H 0.064 0.936 33 H 0.077 0.923 34 H 0.073 0.927 35 H 0.129 0.871 36 H 0.072 0.928 37 H 0.082 0.918 38 H 0.080 0.920 39 H 0.049 0.951 40 H 0.087 0.913 41 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.303 3.830 16.987 18.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.162 3.838 3 H 0.038 0.962 4 C -0.585 4.585 5 H 0.078 0.922 6 C -0.182 4.182 7 N -0.550 5.550 8 Si 0.785 3.215 9 H -0.192 1.192 10 H -0.205 1.205 11 H -0.203 1.203 12 N -0.868 5.868 13 S 2.701 3.299 14 O -0.990 6.990 15 O -0.984 6.984 16 C -0.713 4.713 17 C -0.084 4.084 18 C -0.181 4.181 19 C -0.153 4.153 20 C -0.113 4.113 21 C -0.151 4.151 22 C -0.177 4.177 23 C -0.141 4.141 24 H 0.062 0.938 25 H 0.066 0.934 26 H 0.089 0.911 27 H 0.076 0.924 28 H 0.246 0.754 29 H 0.179 0.821 30 H 0.161 0.839 31 H 0.069 0.931 32 H 0.083 0.917 33 H 0.095 0.905 34 H 0.091 0.909 35 H 0.147 0.853 36 H 0.091 0.909 37 H 0.101 0.899 38 H 0.098 0.902 39 H 0.068 0.932 40 H 0.105 0.895 41 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -4.478 4.206 17.192 18.257 hybrid contribution 0.103 -0.834 -1.519 1.736 sum -4.375 3.372 15.673 16.618 Atomic orbital electron populations 1.22238 0.96994 1.00752 1.01456 1.18362 0.91828 0.91612 0.82019 0.96247 1.21566 1.32165 1.13396 0.91397 0.92218 1.25650 0.95066 0.95725 1.01728 1.69951 1.36909 1.23547 1.24642 0.85584 0.78483 0.78937 0.78470 1.19201 1.20533 1.20349 1.55439 1.84318 1.19328 1.27687 1.04773 0.78093 0.74070 0.72940 1.93524 1.63604 1.61931 1.79989 1.93497 1.81213 1.59541 1.64114 1.30162 1.21737 1.12310 1.07124 1.22517 0.99703 0.94816 0.91357 1.22953 0.98093 0.96587 1.00445 1.22611 0.99097 0.98055 0.95497 1.23627 0.95625 0.95877 0.96129 1.22807 1.01003 0.95337 0.96001 1.23138 1.00395 0.99326 0.94795 1.23565 0.94672 0.98954 0.96892 0.93816 0.93366 0.91067 0.92430 0.75412 0.82112 0.83900 0.93109 0.91700 0.90467 0.90873 0.85329 0.90944 0.89887 0.90177 0.93182 0.89481 0.90456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.69 9.26 71.98 0.67 -6.02 16 2 C 0.27 12.99 2.80 44.25 0.12 13.11 16 3 H 0.02 1.07 7.48 -2.39 -0.02 1.05 16 4 C -0.55 -29.45 8.76 25.60 0.22 -29.22 16 5 H 0.06 3.17 7.81 -2.91 -0.02 3.15 16 6 C 0.02 1.01 5.30 84.65 0.45 1.45 16 7 N -0.91 -50.27 11.32 21.45 0.24 -50.03 16 8 Si 0.96 42.66 29.54 68.60 2.03 44.69 16 9 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 10 H -0.28 -12.09 7.11 99.48 0.71 -11.38 16 11 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 12 N -1.11 -45.84 5.35 -172.51 -0.92 -46.76 16 13 S 2.60 98.93 5.02 -56.49 -0.28 98.65 16 14 O -1.00 -46.18 16.39 -127.65 -2.09 -48.27 16 15 O -0.99 -39.57 17.07 -127.65 -2.18 -41.75 16 16 C -0.58 -16.26 5.08 71.98 0.37 -15.89 16 17 C -0.08 -2.06 1.02 -48.79 -0.05 -2.11 16 18 C -0.14 -3.84 4.92 32.15 0.16 -3.68 16 19 C -0.12 -2.20 6.21 32.14 0.20 -2.00 16 20 C -0.09 -1.47 5.19 -7.39 -0.04 -1.51 16 21 C -0.11 -1.94 6.24 32.54 0.20 -1.74 16 22 C -0.14 -3.30 5.00 32.52 0.16 -3.14 16 23 C -0.10 -1.88 6.10 33.35 0.20 -1.68 16 24 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 25 H 0.05 1.67 5.78 -2.39 -0.01 1.66 16 26 H 0.07 3.46 6.07 -2.39 -0.01 3.44 16 27 H 0.27 13.95 8.31 -92.70 -0.77 13.18 16 28 H 0.41 15.84 8.79 -96.75 -0.85 14.99 16 29 H 0.16 3.58 8.14 -2.39 -0.02 3.56 16 30 H 0.14 3.97 6.77 -2.39 -0.02 3.96 16 31 H 0.05 1.54 7.57 -2.39 -0.02 1.52 16 32 H 0.06 1.86 8.14 -2.38 -0.02 1.84 16 33 H 0.08 1.30 8.14 -2.38 -0.02 1.29 16 34 H 0.07 1.29 7.84 -2.39 -0.02 1.27 16 35 H 0.13 1.35 8.14 -2.39 -0.02 1.33 16 36 H 0.07 1.17 7.84 -2.39 -0.02 1.15 16 37 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 38 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 39 H 0.05 1.38 7.56 -2.39 -0.02 1.36 16 40 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 41 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 Total: -1.00 -67.17 326.97 -0.37 -67.55 By element: Atomic # 1 Polarization: 28.19 SS G_CDS: 0.17 Total: 28.36 kcal Atomic # 6 Polarization: -55.09 SS G_CDS: 2.67 Total: -52.43 kcal Atomic # 7 Polarization: -96.11 SS G_CDS: -0.68 Total: -96.79 kcal Atomic # 8 Polarization: -85.75 SS G_CDS: -4.27 Total: -90.02 kcal Atomic # 14 Polarization: 42.66 SS G_CDS: 2.03 Total: 44.69 kcal Atomic # 16 Polarization: 98.93 SS G_CDS: -0.28 Total: 98.65 kcal Total: -67.17 -0.37 -67.55 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408237636.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.562 kcal (2) G-P(sol) polarization free energy of solvation -67.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.547 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds