Wall clock time and date at job start Tue Mar 31 2020 06:08:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.42902 * 114.00284 * 2 1 4 4 C 1.53002 * 109.46946 * 307.29273 * 3 2 1 5 5 C 1.52998 * 109.47583 * 187.28629 * 3 2 1 6 6 H 1.09004 * 109.47015 * 183.44642 * 5 3 2 7 7 C 1.52997 * 109.47304 * 303.44348 * 5 3 2 8 8 N 1.46500 * 109.47032 * 63.44677 * 5 3 2 9 9 C 1.34775 * 120.00282 * 155.00502 * 8 5 3 10 10 O 1.21281 * 119.99870 * 359.97438 * 9 8 5 11 11 C 1.50697 * 120.00370 * 180.02562 * 9 8 5 12 12 S 1.80999 * 109.47256 * 179.97438 * 11 9 8 13 13 C 1.76195 * 99.99906 * 179.97438 * 12 11 9 14 14 H 1.08003 * 120.00372 * 359.97438 * 13 12 11 15 15 C 1.38798 * 120.00217 * 180.02562 * 13 12 11 16 16 N 1.31628 * 119.99827 * 359.97438 * 15 13 12 17 17 Si 1.86797 * 120.00442 * 180.02562 * 15 13 12 18 18 H 1.48509 * 109.47345 * 89.99386 * 17 15 13 19 19 H 1.48504 * 109.47483 * 209.99530 * 17 15 13 20 20 H 1.48501 * 109.47173 * 329.99883 * 17 15 13 21 21 C 1.53009 * 109.46733 * 67.28434 * 3 2 1 22 22 C 1.53000 * 117.49738 * 4.61088 * 21 3 2 23 23 C 1.52997 * 117.49900 * 295.98404 * 21 3 2 24 24 H 1.09004 * 109.46995 * 169.94048 * 1 2 3 25 25 H 1.08994 * 109.47087 * 289.93827 * 1 2 3 26 26 H 1.09001 * 109.47111 * 49.94470 * 1 2 3 27 27 H 1.08991 * 109.47809 * 59.99322 * 4 3 2 28 28 H 1.09006 * 109.46629 * 179.97438 * 4 3 2 29 29 H 1.09003 * 109.46930 * 299.99152 * 4 3 2 30 30 H 1.09003 * 109.47150 * 64.84630 * 7 5 3 31 31 H 1.08994 * 109.47817 * 184.85012 * 7 5 3 32 32 H 1.09005 * 109.47426 * 304.85302 * 7 5 3 33 33 H 0.97003 * 120.00041 * 334.99310 * 8 5 3 34 34 H 1.09007 * 109.46456 * 299.99399 * 11 9 8 35 35 H 1.08996 * 109.47178 * 59.99005 * 11 9 8 36 36 H 0.97001 * 120.00139 * 180.02562 * 16 15 13 37 37 H 1.09000 * 115.54521 * 150.31434 * 21 3 2 38 38 H 1.08999 * 117.49955 * 359.97438 * 22 21 3 39 39 H 1.08995 * 117.49465 * 145.02300 * 22 21 3 40 40 H 1.09001 * 117.50131 * 214.97384 * 23 21 3 41 41 H 1.09001 * 117.50158 * 359.97438 * 23 21 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 1.4192 2.1268 -1.1476 5 6 3.5248 1.1894 -0.1829 6 1 3.9751 2.1802 -0.1217 7 6 4.1044 0.2970 0.9164 8 7 3.8148 0.6013 -1.4930 9 6 4.9952 0.8465 -2.0954 10 8 5.8172 1.5544 -1.5531 11 6 5.2933 0.2420 -3.4432 12 16 6.9433 0.7543 -3.9827 13 6 7.0273 -0.0717 -5.5368 14 1 6.1952 -0.6713 -5.8753 15 6 8.1631 0.0473 -6.3255 16 7 9.1774 0.7777 -5.9128 17 14 8.2519 -0.8277 -7.9735 18 1 7.7226 0.0639 -9.0366 19 1 9.6643 -1.1733 -8.2751 20 1 7.4393 -2.0695 -7.9190 21 6 1.7087 1.9979 1.3307 22 6 0.9836 1.1823 2.4031 23 6 0.2436 2.2944 1.6568 24 1 -0.3633 -1.0119 -0.1795 25 1 -0.3633 0.3504 0.9660 26 1 -0.3633 0.6613 -0.7866 27 1 0.3403 2.2095 -1.0173 28 1 1.8623 3.1228 -1.1473 29 1 1.6340 1.6336 -2.0956 30 1 3.7194 -0.7163 0.8025 31 1 5.1915 0.2836 0.8381 32 1 3.8153 0.6880 1.8920 33 1 3.1572 0.0352 -1.9268 34 1 5.2557 -0.8450 -3.3702 35 1 4.5526 0.5833 -4.1664 36 1 9.9711 0.8612 -6.4641 37 1 2.4547 2.7190 1.6649 38 1 0.7210 0.1527 2.1605 39 1 1.2525 1.3668 3.4431 40 1 0.0256 3.2103 2.2061 41 1 -0.5055 1.9965 0.9232 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000413953678.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:37 Heat of formation + Delta-G solvation = -46.091708 kcal Electronic energy + Delta-G solvation = -21167.303599 eV Core-core repulsion = 17982.215860 eV Total energy + Delta-G solvation = -3185.087739 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 287.134 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.75571 -38.89990 -35.76846 -35.13295 -32.40265 -31.71778 -30.14141 -28.54820 -27.32670 -25.45662 -23.99810 -22.59541 -22.52040 -20.31961 -20.02745 -17.93428 -16.96377 -16.76880 -16.14932 -15.71207 -14.94427 -14.88964 -14.77808 -14.56926 -13.91977 -13.66199 -13.40318 -13.28471 -12.95549 -12.65058 -12.53175 -12.34967 -12.05966 -11.88676 -11.73606 -11.62333 -11.11093 -11.03900 -10.99557 -10.90691 -10.75129 -10.59272 -10.25041 -9.78745 -9.72958 -9.30505 -9.04266 -8.78390 -8.19708 -6.46295 -6.18997 -3.88975 3.07151 3.15003 3.24159 3.29713 3.31383 3.34285 3.62055 3.81313 4.23279 4.30433 4.39731 4.57085 4.70142 4.84269 5.00145 5.08104 5.10363 5.16098 5.20380 5.26881 5.37328 5.39096 5.45779 5.48557 5.57340 5.67695 5.70038 5.76361 5.83898 5.91278 5.94779 5.96043 6.09389 6.19797 6.39061 6.74226 6.95349 7.62371 7.83330 8.38048 8.70070 9.26356 10.88440 Molecular weight = 287.13amu Principal moments of inertia in cm(-1) A = 0.038102 B = 0.003200 C = 0.003087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 734.686635 B = 8746.901678 C = 9069.586711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.002 4.002 2 O -0.368 6.368 3 C 0.139 3.861 4 C -0.178 4.178 5 C 0.166 3.834 6 H 0.097 0.903 7 C -0.158 4.158 8 N -0.729 5.729 9 C 0.533 3.467 10 O -0.520 6.520 11 C -0.153 4.153 12 S -0.060 6.060 13 C -0.535 4.535 14 H 0.072 0.928 15 C 0.073 3.927 16 N -0.868 5.868 17 Si 0.918 3.082 18 H -0.277 1.277 19 H -0.282 1.282 20 H -0.272 1.272 21 C -0.171 4.171 22 C -0.174 4.174 23 C -0.190 4.190 24 H 0.081 0.919 25 H 0.063 0.937 26 H 0.049 0.951 27 H 0.063 0.937 28 H 0.072 0.928 29 H 0.069 0.931 30 H 0.063 0.937 31 H 0.061 0.939 32 H 0.062 0.938 33 H 0.401 0.599 34 H 0.089 0.911 35 H 0.088 0.912 36 H 0.268 0.732 37 H 0.114 0.886 38 H 0.109 0.891 39 H 0.093 0.907 40 H 0.094 0.906 41 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.632 0.324 14.271 25.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 O -0.287 6.287 3 C 0.099 3.901 4 C -0.235 4.235 5 C 0.061 3.939 6 H 0.115 0.885 7 C -0.216 4.216 8 N -0.383 5.383 9 C 0.319 3.681 10 O -0.395 6.395 11 C -0.304 4.304 12 S 0.167 5.833 13 C -0.683 4.683 14 H 0.090 0.910 15 C -0.136 4.136 16 N -0.503 5.503 17 Si 0.745 3.255 18 H -0.203 1.203 19 H -0.208 1.208 20 H -0.197 1.197 21 C -0.190 4.190 22 C -0.211 4.211 23 C -0.227 4.227 24 H 0.100 0.900 25 H 0.081 0.919 26 H 0.067 0.933 27 H 0.082 0.918 28 H 0.091 0.909 29 H 0.088 0.912 30 H 0.082 0.918 31 H 0.080 0.920 32 H 0.081 0.919 33 H 0.235 0.765 34 H 0.107 0.893 35 H 0.106 0.894 36 H 0.078 0.922 37 H 0.132 0.868 38 H 0.127 0.873 39 H 0.112 0.888 40 H 0.112 0.888 41 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -18.953 1.409 15.135 24.295 hybrid contribution -1.428 -1.386 -1.873 2.733 sum -20.381 0.023 13.262 24.316 Atomic orbital electron populations 1.23404 0.82041 1.02818 1.01548 1.87991 1.19202 1.26730 1.94729 1.21238 0.93185 0.83114 0.92598 1.22410 1.01203 1.01273 0.98625 1.20801 0.90607 0.98757 0.83767 0.88491 1.22085 1.01521 1.00450 0.97584 1.46016 1.18798 1.53253 1.20231 1.20288 0.80940 0.80288 0.86576 1.90689 1.46004 1.37079 1.65680 1.23528 1.07203 1.03773 0.95854 1.85370 1.09541 1.65956 1.22476 1.22877 1.05219 1.35518 1.04710 0.90962 1.24988 0.94670 0.95354 0.98588 1.70019 1.05368 1.37366 1.37579 0.86174 0.77531 0.79590 0.82232 1.20299 1.20771 1.19698 1.22876 0.95913 1.03519 0.96670 1.23196 1.03537 0.97529 0.96848 1.23321 0.94741 1.00586 1.04006 0.90011 0.91880 0.93303 0.91826 0.90947 0.91213 0.91794 0.91983 0.91917 0.76480 0.89259 0.89360 0.92220 0.86813 0.87257 0.88838 0.88762 0.88165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 -0.02 8.59 101.05 0.87 0.85 16 2 O -0.37 -3.59 8.50 -35.23 -0.30 -3.89 16 3 C 0.14 1.35 0.47 -90.62 -0.04 1.30 16 4 C -0.18 -1.64 7.64 37.16 0.28 -1.35 16 5 C 0.17 2.08 1.91 -67.93 -0.13 1.95 16 6 H 0.10 1.36 7.58 -51.93 -0.39 0.96 16 7 C -0.16 -1.97 9.11 37.16 0.34 -1.63 16 8 N -0.73 -10.34 4.32 -53.81 -0.23 -10.57 16 9 C 0.53 10.14 7.81 -10.99 -0.09 10.05 16 10 O -0.52 -11.85 15.52 5.56 0.09 -11.77 16 11 C -0.15 -3.15 6.16 36.00 0.22 -2.93 16 12 S -0.06 -1.65 20.57 -107.50 -2.21 -3.86 16 13 C -0.53 -15.41 9.50 30.94 0.29 -15.12 16 14 H 0.07 1.97 7.80 -52.48 -0.41 1.56 16 15 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 16 N -0.87 -26.38 13.22 55.49 0.73 -25.65 16 17 Si 0.92 21.59 29.55 -169.99 -5.02 16.57 16 18 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 19 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 20 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 21 C -0.17 -1.43 4.05 -90.62 -0.37 -1.80 16 22 C -0.17 -1.29 9.27 -26.73 -0.25 -1.54 16 23 C -0.19 -1.29 8.88 -26.73 -0.24 -1.53 16 24 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 25 H 0.06 0.40 3.59 -51.93 -0.19 0.21 16 26 H 0.05 0.32 5.67 -51.93 -0.29 0.03 16 27 H 0.06 0.48 5.24 -51.93 -0.27 0.21 16 28 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.07 0.69 7.22 -51.93 -0.38 0.32 16 30 H 0.06 0.80 7.76 -51.93 -0.40 0.40 16 31 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 32 H 0.06 0.67 7.17 -51.93 -0.37 0.30 16 33 H 0.40 4.92 7.90 -40.82 -0.32 4.60 16 34 H 0.09 1.73 8.14 -51.91 -0.42 1.30 16 35 H 0.09 1.68 8.14 -51.92 -0.42 1.26 16 36 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 37 H 0.11 0.96 8.08 -51.93 -0.42 0.54 16 38 H 0.11 0.84 5.46 -51.93 -0.28 0.56 16 39 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.09 0.58 8.14 -51.93 -0.42 0.15 16 41 H 0.10 0.62 4.99 -51.93 -0.26 0.36 16 LS Contribution 335.66 15.07 5.06 5.06 Total: -1.00 -33.55 335.66 -7.17 -40.73 By element: Atomic # 1 Polarization: 9.21 SS G_CDS: -6.08 Total: 3.12 kcal Atomic # 6 Polarization: -10.53 SS G_CDS: 0.80 Total: -9.73 kcal Atomic # 7 Polarization: -36.72 SS G_CDS: 0.50 Total: -36.22 kcal Atomic # 8 Polarization: -15.45 SS G_CDS: -0.21 Total: -15.66 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Atomic # 16 Polarization: -1.65 SS G_CDS: -2.21 Total: -3.86 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -33.55 -7.17 -40.73 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413953678.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.367 kcal (2) G-P(sol) polarization free energy of solvation -33.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.725 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds