Wall clock time and date at job start Tue Mar 31 2020 06:08:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.42902 * 114.00284 * 2 1 4 4 C 1.53002 * 109.46946 * 307.29273 * 3 2 1 5 5 C 1.52998 * 109.47583 * 187.28629 * 3 2 1 6 6 H 1.09004 * 109.47015 * 183.44642 * 5 3 2 7 7 C 1.52997 * 109.47304 * 303.44348 * 5 3 2 8 8 N 1.46500 * 109.47032 * 63.44677 * 5 3 2 9 9 C 1.34775 * 120.00282 * 155.00502 * 8 5 3 10 10 O 1.21281 * 119.99870 * 359.97438 * 9 8 5 11 11 C 1.50697 * 120.00370 * 180.02562 * 9 8 5 12 12 S 1.80999 * 109.47256 * 179.97438 * 11 9 8 13 13 C 1.76195 * 99.99906 * 179.97438 * 12 11 9 14 14 H 1.08003 * 120.00372 * 359.97438 * 13 12 11 15 15 C 1.38798 * 120.00217 * 180.02562 * 13 12 11 16 16 N 1.31628 * 119.99827 * 359.97438 * 15 13 12 17 17 Si 1.86797 * 120.00442 * 180.02562 * 15 13 12 18 18 H 1.48509 * 109.47345 * 89.99386 * 17 15 13 19 19 H 1.48504 * 109.47483 * 209.99530 * 17 15 13 20 20 H 1.48501 * 109.47173 * 329.99883 * 17 15 13 21 21 C 1.53009 * 109.46733 * 67.28434 * 3 2 1 22 22 C 1.53000 * 117.49738 * 4.61088 * 21 3 2 23 23 C 1.52997 * 117.49900 * 295.98404 * 21 3 2 24 24 H 1.09004 * 109.46995 * 169.94048 * 1 2 3 25 25 H 1.08994 * 109.47087 * 289.93827 * 1 2 3 26 26 H 1.09001 * 109.47111 * 49.94470 * 1 2 3 27 27 H 1.08991 * 109.47809 * 59.99322 * 4 3 2 28 28 H 1.09006 * 109.46629 * 179.97438 * 4 3 2 29 29 H 1.09003 * 109.46930 * 299.99152 * 4 3 2 30 30 H 1.09003 * 109.47150 * 64.84630 * 7 5 3 31 31 H 1.08994 * 109.47817 * 184.85012 * 7 5 3 32 32 H 1.09005 * 109.47426 * 304.85302 * 7 5 3 33 33 H 0.97003 * 120.00041 * 334.99310 * 8 5 3 34 34 H 1.09007 * 109.46456 * 299.99399 * 11 9 8 35 35 H 1.08996 * 109.47178 * 59.99005 * 11 9 8 36 36 H 0.97001 * 120.00139 * 180.02562 * 16 15 13 37 37 H 1.09000 * 115.54521 * 150.31434 * 21 3 2 38 38 H 1.08999 * 117.49955 * 359.97438 * 22 21 3 39 39 H 1.08995 * 117.49465 * 145.02300 * 22 21 3 40 40 H 1.09001 * 117.50131 * 214.97384 * 23 21 3 41 41 H 1.09001 * 117.50158 * 359.97438 * 23 21 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 1.4192 2.1268 -1.1476 5 6 3.5248 1.1894 -0.1829 6 1 3.9751 2.1802 -0.1217 7 6 4.1044 0.2970 0.9164 8 7 3.8148 0.6013 -1.4930 9 6 4.9952 0.8465 -2.0954 10 8 5.8172 1.5544 -1.5531 11 6 5.2933 0.2420 -3.4432 12 16 6.9433 0.7543 -3.9827 13 6 7.0273 -0.0717 -5.5368 14 1 6.1952 -0.6713 -5.8753 15 6 8.1631 0.0473 -6.3255 16 7 9.1774 0.7777 -5.9128 17 14 8.2519 -0.8277 -7.9735 18 1 7.7226 0.0639 -9.0366 19 1 9.6643 -1.1733 -8.2751 20 1 7.4393 -2.0695 -7.9190 21 6 1.7087 1.9979 1.3307 22 6 0.9836 1.1823 2.4031 23 6 0.2436 2.2944 1.6568 24 1 -0.3633 -1.0119 -0.1795 25 1 -0.3633 0.3504 0.9660 26 1 -0.3633 0.6613 -0.7866 27 1 0.3403 2.2095 -1.0173 28 1 1.8623 3.1228 -1.1473 29 1 1.6340 1.6336 -2.0956 30 1 3.7194 -0.7163 0.8025 31 1 5.1915 0.2836 0.8381 32 1 3.8153 0.6880 1.8920 33 1 3.1572 0.0352 -1.9268 34 1 5.2557 -0.8450 -3.3702 35 1 4.5526 0.5833 -4.1664 36 1 9.9711 0.8612 -6.4641 37 1 2.4547 2.7190 1.6649 38 1 0.7210 0.1527 2.1605 39 1 1.2525 1.3668 3.4431 40 1 0.0256 3.2103 2.2061 41 1 -0.5055 1.9965 0.9232 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000413953678.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:37 Heat of formation + Delta-G solvation = -68.624785 kcal Electronic energy + Delta-G solvation = -21168.280706 eV Core-core repulsion = 17982.215860 eV Total energy + Delta-G solvation = -3186.064846 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 287.134 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.60210 -40.25549 -36.57295 -36.16193 -34.58292 -32.96177 -31.08699 -29.99772 -27.99473 -27.65186 -24.77721 -23.55135 -23.13198 -21.46937 -21.03074 -19.85599 -18.13322 -17.76930 -17.28874 -16.87760 -16.53590 -16.34245 -16.14703 -15.68997 -15.17761 -14.71923 -14.58239 -14.39905 -14.21661 -13.93731 -13.64062 -13.22220 -13.16852 -13.12018 -12.88733 -12.76331 -12.69813 -12.59109 -12.27214 -12.01310 -11.73820 -11.58352 -11.27380 -11.13983 -10.94587 -10.85330 -10.37861 -10.27446 -10.07741 -8.66090 -8.34336 -6.12296 1.27083 1.42702 1.47026 1.57831 1.62799 2.25028 2.29368 2.63226 2.99670 3.03589 3.32796 3.49474 3.69670 3.88319 3.97901 4.08609 4.17221 4.29518 4.32256 4.43266 4.45720 4.50498 4.54673 4.58143 4.71812 4.75681 4.82236 4.86750 4.92682 4.97616 5.13082 5.21170 5.24208 5.28421 5.34416 5.42058 5.51675 6.20137 6.26353 6.52547 7.06843 7.25787 8.74927 Molecular weight = 287.13amu Principal moments of inertia in cm(-1) A = 0.038102 B = 0.003200 C = 0.003087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 734.686635 B = 8746.901678 C = 9069.586711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.008 4.008 2 O -0.382 6.382 3 C 0.149 3.851 4 C -0.178 4.178 5 C 0.162 3.838 6 H 0.081 0.919 7 C -0.150 4.150 8 N -0.704 5.704 9 C 0.536 3.464 10 O -0.564 6.564 11 C -0.130 4.130 12 S -0.148 6.148 13 C -0.547 4.547 14 H 0.082 0.918 15 C 0.013 3.987 16 N -0.911 5.911 17 Si 0.999 3.001 18 H -0.267 1.267 19 H -0.277 1.277 20 H -0.259 1.259 21 C -0.187 4.187 22 C -0.173 4.173 23 C -0.176 4.176 24 H 0.091 0.909 25 H 0.074 0.926 26 H 0.056 0.944 27 H 0.083 0.917 28 H 0.065 0.935 29 H 0.061 0.939 30 H 0.065 0.935 31 H 0.033 0.967 32 H 0.081 0.919 33 H 0.414 0.586 34 H 0.106 0.894 35 H 0.109 0.891 36 H 0.271 0.729 37 H 0.109 0.891 38 H 0.108 0.892 39 H 0.100 0.900 40 H 0.103 0.897 41 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.382 -0.716 14.041 27.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 O -0.302 6.302 3 C 0.109 3.891 4 C -0.235 4.235 5 C 0.057 3.943 6 H 0.099 0.901 7 C -0.208 4.208 8 N -0.358 5.358 9 C 0.322 3.678 10 O -0.442 6.442 11 C -0.281 4.281 12 S 0.079 5.921 13 C -0.695 4.695 14 H 0.100 0.900 15 C -0.191 4.191 16 N -0.548 5.548 17 Si 0.821 3.179 18 H -0.192 1.192 19 H -0.203 1.203 20 H -0.182 1.182 21 C -0.206 4.206 22 C -0.209 4.209 23 C -0.212 4.212 24 H 0.110 0.890 25 H 0.092 0.908 26 H 0.075 0.925 27 H 0.102 0.898 28 H 0.084 0.916 29 H 0.080 0.920 30 H 0.084 0.916 31 H 0.052 0.948 32 H 0.100 0.900 33 H 0.250 0.750 34 H 0.124 0.876 35 H 0.127 0.873 36 H 0.080 0.920 37 H 0.127 0.873 38 H 0.126 0.874 39 H 0.118 0.882 40 H 0.122 0.878 41 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -21.765 0.351 14.924 26.392 hybrid contribution -0.690 -1.068 -1.688 2.114 sum -22.454 -0.717 13.236 26.075 Atomic orbital electron populations 1.23580 0.80470 1.03793 1.02453 1.87959 1.20874 1.26431 1.94909 1.20989 0.90788 0.83580 0.93698 1.22419 1.02497 1.00651 0.97968 1.20946 0.93158 0.97708 0.82499 0.90141 1.21998 0.99561 1.00641 0.98601 1.45791 1.17170 1.52250 1.20542 1.20028 0.81834 0.79893 0.86076 1.90680 1.47755 1.39234 1.66552 1.23370 1.02850 1.04702 0.97161 1.85540 1.15690 1.67259 1.23570 1.23211 1.05862 1.35638 1.04817 0.90005 1.26132 0.94026 0.95990 1.03003 1.70183 1.06162 1.38983 1.39435 0.84946 0.77845 0.78604 0.76529 1.19238 1.20266 1.18247 1.22807 0.97223 1.04215 0.96370 1.23240 1.03164 0.97602 0.96904 1.23400 0.93485 1.00702 1.03653 0.89048 0.90824 0.92548 0.89782 0.91617 0.91983 0.91582 0.94782 0.89990 0.74950 0.87576 0.87323 0.91980 0.87271 0.87356 0.88203 0.87834 0.87206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.09 8.59 113.37 0.97 0.89 16 2 O -0.38 -6.58 8.50 -148.98 -1.27 -7.85 16 3 C 0.15 2.66 0.47 -10.79 -0.01 2.65 16 4 C -0.18 -2.95 7.64 71.98 0.55 -2.41 16 5 C 0.16 3.98 1.91 44.99 0.09 4.07 16 6 H 0.08 2.30 7.58 -2.38 -0.02 2.28 16 7 C -0.15 -3.69 9.11 71.98 0.66 -3.03 16 8 N -0.70 -19.48 4.32 -442.54 -1.91 -21.40 16 9 C 0.54 20.51 7.81 87.66 0.68 21.19 16 10 O -0.56 -26.60 15.52 -3.03 -0.05 -26.65 16 11 C -0.13 -5.31 6.16 71.23 0.44 -4.87 16 12 S -0.15 -8.34 20.57 -56.49 -1.16 -9.50 16 13 C -0.55 -31.70 9.50 67.95 0.65 -31.05 16 14 H 0.08 4.41 7.80 -2.91 -0.02 4.38 16 15 C 0.01 0.76 5.49 84.86 0.47 1.23 16 16 N -0.91 -56.48 13.22 21.65 0.29 -56.20 16 17 Si 1.00 43.99 29.55 68.60 2.03 46.02 16 18 H -0.27 -11.26 7.11 99.48 0.71 -10.56 16 19 H -0.28 -11.89 7.11 99.48 0.71 -11.18 16 20 H -0.26 -10.70 7.11 99.48 0.71 -9.99 16 21 C -0.19 -2.79 4.05 -10.79 -0.04 -2.84 16 22 C -0.17 -2.12 9.27 30.60 0.28 -1.83 16 23 C -0.18 -1.88 8.88 30.60 0.27 -1.61 16 24 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 25 H 0.07 0.68 3.59 -2.39 -0.01 0.68 16 26 H 0.06 0.56 5.67 -2.39 -0.01 0.54 16 27 H 0.08 1.04 5.24 -2.39 -0.01 1.03 16 28 H 0.06 1.18 8.14 -2.38 -0.02 1.17 16 29 H 0.06 1.11 7.22 -2.39 -0.02 1.10 16 30 H 0.07 1.59 7.76 -2.39 -0.02 1.57 16 31 H 0.03 1.02 8.14 -2.39 -0.02 1.00 16 32 H 0.08 1.68 7.17 -2.38 -0.02 1.66 16 33 H 0.41 9.44 7.90 -92.71 -0.73 8.71 16 34 H 0.11 3.99 8.14 -2.39 -0.02 3.97 16 35 H 0.11 4.00 8.14 -2.40 -0.02 3.98 16 36 H 0.27 15.57 8.31 -92.71 -0.77 14.80 16 37 H 0.11 1.73 8.08 -2.39 -0.02 1.71 16 38 H 0.11 1.38 5.46 -2.39 -0.01 1.37 16 39 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 40 H 0.10 0.95 8.14 -2.39 -0.02 0.93 16 41 H 0.11 0.97 4.99 -2.39 -0.01 0.96 16 Total: -1.00 -74.39 335.66 3.24 -71.15 By element: Atomic # 1 Polarization: 21.73 SS G_CDS: 0.31 Total: 22.04 kcal Atomic # 6 Polarization: -22.62 SS G_CDS: 5.01 Total: -17.61 kcal Atomic # 7 Polarization: -75.97 SS G_CDS: -1.62 Total: -77.59 kcal Atomic # 8 Polarization: -33.19 SS G_CDS: -1.31 Total: -34.50 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 2.03 Total: 46.02 kcal Atomic # 16 Polarization: -8.34 SS G_CDS: -1.16 Total: -9.50 kcal Total: -74.39 3.24 -71.15 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413953678.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.521 kcal (2) G-P(sol) polarization free energy of solvation -74.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.146 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds