Wall clock time and date at job start Tue Mar 31 2020 06:20:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46502 * 109.47182 * 2 1 4 4 C 1.36939 * 119.99750 * 265.78180 * 3 2 1 5 5 H 1.08004 * 119.99967 * 146.21464 * 4 3 2 6 6 C 1.38808 * 120.00053 * 326.21623 * 4 3 2 7 7 N 1.31618 * 120.00061 * 337.68854 * 6 4 3 8 8 Si 1.86805 * 119.99959 * 157.68840 * 6 4 3 9 9 H 1.48493 * 109.47079 * 59.99803 * 8 6 4 10 10 H 1.48505 * 109.46937 * 180.02562 * 8 6 4 11 11 H 1.48496 * 109.46991 * 299.99453 * 8 6 4 12 12 C 1.46499 * 120.00455 * 85.77970 * 3 2 1 13 13 C 1.53000 * 109.46817 * 89.99806 * 12 3 2 14 14 C 1.50697 * 109.47171 * 179.97438 * 13 12 3 15 15 C 1.38249 * 119.99594 * 90.00397 * 14 13 12 16 16 C 1.38229 * 119.99899 * 179.72579 * 15 14 13 17 17 C 1.38241 * 119.99992 * 0.25778 * 16 15 14 18 18 C 1.50705 * 119.99769 * 179.97438 * 17 16 15 19 19 F 1.39901 * 109.46848 * 90.00216 * 18 17 16 20 20 F 1.39898 * 109.46962 * 209.99889 * 18 17 16 21 21 F 1.39892 * 109.47087 * 330.00069 * 18 17 16 22 22 C 1.38232 * 119.99885 * 0.02562 * 17 16 15 23 23 C 1.38231 * 120.00689 * 270.24194 * 14 13 12 24 24 H 1.09002 * 109.47087 * 300.00705 * 1 2 3 25 25 H 1.09003 * 109.46697 * 60.00333 * 1 2 3 26 26 H 1.09000 * 109.46861 * 180.02562 * 1 2 3 27 27 H 1.08994 * 109.47580 * 239.99648 * 2 1 3 28 28 H 1.08998 * 109.46968 * 119.99308 * 2 1 3 29 29 H 0.97003 * 120.00097 * 180.02562 * 7 6 4 30 30 H 1.08994 * 109.47051 * 330.00678 * 12 3 2 31 31 H 1.08997 * 109.47199 * 210.00152 * 12 3 2 32 32 H 1.09007 * 109.46823 * 60.00730 * 13 12 3 33 33 H 1.09002 * 109.47886 * 300.00459 * 13 12 3 34 34 H 1.08000 * 119.99637 * 0.02562 * 15 14 13 35 35 H 1.07997 * 120.00422 * 180.27836 * 16 15 14 36 36 H 1.08009 * 119.99623 * 179.97438 * 22 17 16 37 37 H 1.08000 * 120.00026 * 0.02562 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3289 1.9976 -1.1827 5 1 2.1597 3.0579 -1.2998 6 6 2.8609 1.2598 -2.2312 7 7 3.4698 0.1181 -1.9900 8 14 2.7128 1.8872 -3.9845 9 1 3.3853 3.2064 -4.0966 10 1 3.3568 0.9223 -4.9116 11 1 1.2780 2.0312 -4.3391 12 6 2.1746 2.1030 1.2652 13 6 3.5853 1.8747 1.8118 14 6 3.7462 2.6177 3.1130 15 6 3.4328 1.9959 4.3073 16 6 3.5858 2.6754 5.5012 17 6 4.0471 3.9786 5.5007 18 6 4.2134 4.7196 6.8024 19 9 5.5052 4.5098 7.2967 20 9 4.0121 6.0875 6.5892 21 9 3.2772 4.2493 7.7295 22 6 4.3549 4.6022 4.3061 23 6 4.2025 3.9225 3.1121 24 1 -0.3633 0.5140 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3633 -1.0277 0.0005 27 1 1.8934 -0.5138 -0.8899 28 1 1.8933 -0.5137 0.8900 29 1 3.8419 -0.3973 -2.7227 30 1 1.4425 1.7371 1.9850 31 1 2.0180 3.1686 1.0974 32 1 4.3174 2.2407 1.0919 33 1 3.7420 0.8091 1.9796 34 1 3.0730 0.9776 4.3077 35 1 3.3452 2.1882 6.4346 36 1 4.7150 5.6205 4.3056 37 1 4.4433 4.4097 2.1788 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000425533861.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:14 Heat of formation + Delta-G solvation = -119.739009 kcal Electronic energy + Delta-G solvation = -22270.118044 eV Core-core repulsion = 18404.536027 eV Total energy + Delta-G solvation = -3865.582017 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 287.119 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -50.21810 -47.73978 -47.68149 -39.42182 -36.23368 -33.51185 -31.45687 -31.03320 -30.06226 -28.05663 -25.55542 -23.90604 -22.85217 -22.59579 -20.95382 -19.79340 -18.55492 -18.44474 -18.40952 -16.67569 -15.52469 -15.28050 -14.85745 -14.67889 -14.51385 -14.43399 -14.15259 -13.94014 -13.91034 -13.85173 -13.82734 -13.39116 -13.08123 -12.62841 -12.43828 -12.14861 -11.96933 -11.42221 -11.29223 -11.11635 -10.99750 -10.75561 -10.71888 -10.32610 -9.97728 -9.83699 -9.61346 -9.00461 -8.85060 -8.50572 -6.67558 -5.84571 -3.36953 1.01599 1.34354 2.63258 3.33704 3.40185 3.42377 3.57045 3.70462 3.99413 4.39335 4.43656 4.85667 4.86789 5.04120 5.27427 5.42227 5.43717 5.56703 5.79476 5.81342 6.03241 6.21590 6.22234 6.26225 6.34410 6.39917 6.50809 6.54379 6.63976 6.81286 6.88055 6.95279 7.06345 7.23793 7.70937 7.76841 8.44874 9.13379 9.76858 10.32670 11.15894 Molecular weight = 287.12amu Principal moments of inertia in cm(-1) A = 0.029019 B = 0.003312 C = 0.003141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 964.652422 B = 8453.151013 C = 8913.388432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.136 3.864 3 N -0.582 5.582 4 C -0.259 4.259 5 H 0.062 0.938 6 C 0.010 3.990 7 N -0.887 5.887 8 Si 0.898 3.102 9 H -0.281 1.281 10 H -0.290 1.290 11 H -0.283 1.283 12 C 0.157 3.843 13 C -0.109 4.109 14 C -0.026 4.026 15 C -0.126 4.126 16 C -0.069 4.069 17 C -0.207 4.207 18 C 0.510 3.490 19 F -0.181 7.181 20 F -0.180 7.180 21 F -0.181 7.181 22 C -0.069 4.069 23 C -0.123 4.123 24 H 0.032 0.968 25 H 0.048 0.952 26 H 0.034 0.966 27 H 0.099 0.901 28 H 0.020 0.980 29 H 0.256 0.744 30 H 0.036 0.964 31 H 0.044 0.956 32 H 0.080 0.920 33 H 0.069 0.931 34 H 0.132 0.868 35 H 0.129 0.871 36 H 0.130 0.870 37 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.890 5.474 14.779 15.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.010 3.990 3 N -0.302 5.302 4 C -0.389 4.389 5 H 0.080 0.920 6 C -0.190 4.190 7 N -0.530 5.530 8 Si 0.727 3.273 9 H -0.207 1.207 10 H -0.216 1.216 11 H -0.209 1.209 12 C 0.030 3.970 13 C -0.149 4.149 14 C -0.027 4.027 15 C -0.144 4.144 16 C -0.088 4.088 17 C -0.208 4.208 18 C 0.456 3.544 19 F -0.162 7.162 20 F -0.162 7.162 21 F -0.162 7.162 22 C -0.087 4.087 23 C -0.141 4.141 24 H 0.051 0.949 25 H 0.067 0.933 26 H 0.053 0.947 27 H 0.117 0.883 28 H 0.038 0.962 29 H 0.066 0.934 30 H 0.055 0.945 31 H 0.063 0.937 32 H 0.098 0.902 33 H 0.087 0.913 34 H 0.150 0.850 35 H 0.147 0.853 36 H 0.148 0.852 37 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 0.964 5.360 14.666 15.644 hybrid contribution 0.055 0.400 -0.605 0.727 sum 1.019 5.760 14.061 15.229 Atomic orbital electron populations 1.22314 1.00878 0.98729 1.00404 1.20969 0.89795 0.86401 1.01793 1.43980 1.73463 1.11868 1.00857 1.19067 1.36127 0.94042 0.89625 0.92009 1.25087 0.96924 0.97838 0.99166 1.69969 1.36230 1.15798 1.31000 0.86452 0.77995 0.78146 0.84710 1.20724 1.21604 1.20926 1.20909 0.91410 0.96403 0.88325 1.21553 1.02764 0.99290 0.91313 1.20623 0.91681 0.94006 0.96365 1.21103 1.01385 1.00633 0.91257 1.20856 0.96295 0.92406 0.99207 1.19804 1.12221 0.97066 0.91738 1.18373 0.73699 0.77160 0.85164 1.93210 1.39059 1.94674 1.89275 1.93172 1.94773 1.33315 1.94902 1.93168 1.65829 1.88318 1.68879 1.20881 0.96878 0.99706 0.91223 1.21146 1.00553 0.94601 0.97767 0.94910 0.93254 0.94672 0.88298 0.96201 0.93446 0.94544 0.93723 0.90161 0.91272 0.85031 0.85280 0.85225 0.84756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.23 10.24 37.16 0.38 -2.85 16 2 C 0.14 3.10 5.97 -4.04 -0.02 3.07 16 3 N -0.58 -13.75 2.45 -173.24 -0.43 -14.18 16 4 C -0.26 -6.75 9.49 -15.06 -0.14 -6.89 16 5 H 0.06 1.61 7.92 -52.48 -0.42 1.19 16 6 C 0.01 0.26 4.93 -17.43 -0.09 0.18 16 7 N -0.89 -24.48 11.32 55.49 0.63 -23.86 16 8 Si 0.90 20.88 29.61 -169.99 -5.03 15.85 16 9 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 10 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 11 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 12 C 0.16 3.08 5.67 -4.04 -0.02 3.05 16 13 C -0.11 -1.94 5.67 -27.88 -0.16 -2.10 16 14 C -0.03 -0.38 5.13 -104.62 -0.54 -0.92 16 15 C -0.13 -1.66 9.70 -39.58 -0.38 -2.04 16 16 C -0.07 -0.85 9.40 -39.58 -0.37 -1.22 16 17 C -0.21 -2.59 5.45 -104.62 -0.57 -3.16 16 18 C 0.51 6.08 3.36 36.01 0.12 6.20 16 19 F -0.18 -2.21 17.30 2.25 0.04 -2.17 16 20 F -0.18 -2.16 16.46 2.25 0.04 -2.12 16 21 F -0.18 -2.14 16.46 2.25 0.04 -2.11 16 22 C -0.07 -0.85 9.40 -39.59 -0.37 -1.23 16 23 C -0.12 -1.67 9.70 -39.59 -0.38 -2.05 16 24 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 25 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 26 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.10 2.56 5.32 -51.93 -0.28 2.28 16 28 H 0.02 0.42 8.10 -51.93 -0.42 0.00 16 29 H 0.26 6.85 8.31 -40.82 -0.34 6.52 16 30 H 0.04 0.67 8.07 -51.93 -0.42 0.25 16 31 H 0.04 0.87 8.04 -51.93 -0.42 0.46 16 32 H 0.08 1.59 8.09 -51.92 -0.42 1.17 16 33 H 0.07 1.28 8.09 -51.93 -0.42 0.86 16 34 H 0.13 1.57 8.06 -52.49 -0.42 1.14 16 35 H 0.13 1.31 7.60 -52.49 -0.40 0.92 16 36 H 0.13 1.37 7.60 -52.48 -0.40 0.97 16 37 H 0.13 1.73 8.06 -52.49 -0.42 1.31 16 LS Contribution 326.74 15.07 4.92 4.92 Total: -1.00 -27.06 326.74 -7.18 -34.24 By element: Atomic # 1 Polarization: 4.21 SS G_CDS: -4.84 Total: -0.63 kcal Atomic # 6 Polarization: -7.40 SS G_CDS: -2.55 Total: -9.95 kcal Atomic # 7 Polarization: -38.24 SS G_CDS: 0.20 Total: -38.03 kcal Atomic # 9 Polarization: -6.52 SS G_CDS: 0.11 Total: -6.40 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.03 Total: 15.85 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -27.06 -7.18 -34.24 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000425533861.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.499 kcal (2) G-P(sol) polarization free energy of solvation -27.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.240 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds