Wall clock time and date at job start Tue Mar 31 2020 06:20:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46502 * 109.47182 * 2 1 4 4 C 1.36939 * 119.99750 * 265.78180 * 3 2 1 5 5 H 1.08004 * 119.99967 * 146.21464 * 4 3 2 6 6 C 1.38808 * 120.00053 * 326.21623 * 4 3 2 7 7 N 1.31618 * 120.00061 * 337.68854 * 6 4 3 8 8 Si 1.86805 * 119.99959 * 157.68840 * 6 4 3 9 9 H 1.48493 * 109.47079 * 59.99803 * 8 6 4 10 10 H 1.48505 * 109.46937 * 180.02562 * 8 6 4 11 11 H 1.48496 * 109.46991 * 299.99453 * 8 6 4 12 12 C 1.46499 * 120.00455 * 85.77970 * 3 2 1 13 13 C 1.53000 * 109.46817 * 89.99806 * 12 3 2 14 14 C 1.50697 * 109.47171 * 179.97438 * 13 12 3 15 15 C 1.38249 * 119.99594 * 90.00397 * 14 13 12 16 16 C 1.38229 * 119.99899 * 179.72579 * 15 14 13 17 17 C 1.38241 * 119.99992 * 0.25778 * 16 15 14 18 18 C 1.50705 * 119.99769 * 179.97438 * 17 16 15 19 19 F 1.39901 * 109.46848 * 90.00216 * 18 17 16 20 20 F 1.39898 * 109.46962 * 209.99889 * 18 17 16 21 21 F 1.39892 * 109.47087 * 330.00069 * 18 17 16 22 22 C 1.38232 * 119.99885 * 0.02562 * 17 16 15 23 23 C 1.38231 * 120.00689 * 270.24194 * 14 13 12 24 24 H 1.09002 * 109.47087 * 300.00705 * 1 2 3 25 25 H 1.09003 * 109.46697 * 60.00333 * 1 2 3 26 26 H 1.09000 * 109.46861 * 180.02562 * 1 2 3 27 27 H 1.08994 * 109.47580 * 239.99648 * 2 1 3 28 28 H 1.08998 * 109.46968 * 119.99308 * 2 1 3 29 29 H 0.97003 * 120.00097 * 180.02562 * 7 6 4 30 30 H 1.08994 * 109.47051 * 330.00678 * 12 3 2 31 31 H 1.08997 * 109.47199 * 210.00152 * 12 3 2 32 32 H 1.09007 * 109.46823 * 60.00730 * 13 12 3 33 33 H 1.09002 * 109.47886 * 300.00459 * 13 12 3 34 34 H 1.08000 * 119.99637 * 0.02562 * 15 14 13 35 35 H 1.07997 * 120.00422 * 180.27836 * 16 15 14 36 36 H 1.08009 * 119.99623 * 179.97438 * 22 17 16 37 37 H 1.08000 * 120.00026 * 0.02562 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3289 1.9976 -1.1827 5 1 2.1597 3.0579 -1.2998 6 6 2.8609 1.2598 -2.2312 7 7 3.4698 0.1181 -1.9900 8 14 2.7128 1.8872 -3.9845 9 1 3.3853 3.2064 -4.0966 10 1 3.3568 0.9223 -4.9116 11 1 1.2780 2.0312 -4.3391 12 6 2.1746 2.1030 1.2652 13 6 3.5853 1.8747 1.8118 14 6 3.7462 2.6177 3.1130 15 6 3.4328 1.9959 4.3073 16 6 3.5858 2.6754 5.5012 17 6 4.0471 3.9786 5.5007 18 6 4.2134 4.7196 6.8024 19 9 5.5052 4.5098 7.2967 20 9 4.0121 6.0875 6.5892 21 9 3.2772 4.2493 7.7295 22 6 4.3549 4.6022 4.3061 23 6 4.2025 3.9225 3.1121 24 1 -0.3633 0.5140 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3633 -1.0277 0.0005 27 1 1.8934 -0.5138 -0.8899 28 1 1.8933 -0.5137 0.8900 29 1 3.8419 -0.3973 -2.7227 30 1 1.4425 1.7371 1.9850 31 1 2.0180 3.1686 1.0974 32 1 4.3174 2.2407 1.0919 33 1 3.7420 0.8091 1.9796 34 1 3.0730 0.9776 4.3077 35 1 3.3452 2.1882 6.4346 36 1 4.7150 5.6205 4.3056 37 1 4.4433 4.4097 2.1788 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000425533861.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:13 Heat of formation + Delta-G solvation = -130.739410 kcal Electronic energy + Delta-G solvation = -22270.595057 eV Core-core repulsion = 18404.536027 eV Total energy + Delta-G solvation = -3866.059030 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 287.119 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -51.16344 -48.67879 -48.63075 -40.49968 -37.94974 -34.88696 -33.29931 -32.04804 -31.54782 -29.59229 -26.94435 -25.51458 -24.07383 -23.85642 -22.26388 -21.41704 -19.50035 -19.41525 -19.35851 -18.57187 -16.86997 -16.62122 -16.39937 -15.76584 -15.63680 -15.49970 -15.44410 -15.33452 -15.09144 -14.87977 -14.79392 -14.52554 -14.36453 -14.04193 -13.99764 -13.60482 -13.35049 -13.08114 -12.83253 -12.63119 -12.46352 -12.27638 -12.20590 -12.02843 -11.76823 -11.49640 -11.37500 -10.50350 -10.00991 -9.95764 -8.58031 -7.81459 -5.37558 -0.03960 0.33142 1.47773 1.50996 1.56677 1.66982 2.50461 2.54113 2.73647 3.04389 3.26758 3.44053 3.61425 3.84880 3.93270 4.11168 4.29024 4.39971 4.51153 4.58792 4.68725 4.71208 4.86351 4.94389 4.97033 4.98204 5.14145 5.18496 5.20496 5.27169 5.46354 5.53394 5.68705 5.69453 5.83815 5.91129 6.48020 7.18842 7.89735 8.39677 9.15520 Molecular weight = 287.12amu Principal moments of inertia in cm(-1) A = 0.029019 B = 0.003312 C = 0.003141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 964.652422 B = 8453.151013 C = 8913.388432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.134 3.866 3 N -0.600 5.600 4 C -0.265 4.265 5 H 0.057 0.943 6 C -0.035 4.035 7 N -0.916 5.916 8 Si 0.953 3.047 9 H -0.276 1.276 10 H -0.294 1.294 11 H -0.282 1.282 12 C 0.157 3.843 13 C -0.090 4.090 14 C -0.041 4.041 15 C -0.125 4.125 16 C -0.066 4.066 17 C -0.207 4.207 18 C 0.516 3.484 19 F -0.182 7.182 20 F -0.180 7.180 21 F -0.178 7.178 22 C -0.068 4.068 23 C -0.128 4.128 24 H 0.047 0.953 25 H 0.031 0.969 26 H 0.057 0.943 27 H 0.067 0.933 28 H 0.027 0.973 29 H 0.251 0.749 30 H 0.053 0.947 31 H 0.042 0.958 32 H 0.051 0.949 33 H 0.057 0.943 34 H 0.144 0.856 35 H 0.153 0.847 36 H 0.149 0.851 37 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.382 6.187 16.371 17.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.009 3.991 3 N -0.320 5.320 4 C -0.396 4.396 5 H 0.075 0.925 6 C -0.233 4.233 7 N -0.560 5.560 8 Si 0.782 3.218 9 H -0.201 1.201 10 H -0.220 1.220 11 H -0.208 1.208 12 C 0.031 3.969 13 C -0.130 4.130 14 C -0.042 4.042 15 C -0.143 4.143 16 C -0.084 4.084 17 C -0.208 4.208 18 C 0.462 3.538 19 F -0.163 7.163 20 F -0.161 7.161 21 F -0.160 7.160 22 C -0.085 4.085 23 C -0.146 4.146 24 H 0.066 0.934 25 H 0.050 0.950 26 H 0.076 0.924 27 H 0.085 0.915 28 H 0.045 0.955 29 H 0.060 0.940 30 H 0.071 0.929 31 H 0.060 0.940 32 H 0.070 0.930 33 H 0.076 0.924 34 H 0.162 0.838 35 H 0.170 0.830 36 H 0.167 0.833 37 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 0.452 6.095 16.289 17.398 hybrid contribution 0.220 0.227 -0.953 1.004 sum 0.672 6.322 15.335 16.601 Atomic orbital electron populations 1.22144 0.98444 1.00220 1.00214 1.20906 0.91703 0.85968 1.00571 1.44163 1.74112 1.12201 1.01565 1.19263 1.35302 0.93994 0.91002 0.92499 1.25685 0.97211 0.98266 1.02108 1.70096 1.37570 1.16935 1.31398 0.85570 0.77724 0.77615 0.80931 1.20143 1.21993 1.20801 1.20939 0.92916 0.95822 0.87209 1.21150 1.00680 0.98839 0.92361 1.20364 0.93932 0.94474 0.95445 1.21224 1.00886 1.01233 0.90913 1.21096 0.95385 0.92245 0.99715 1.19998 1.11466 0.97318 0.92046 1.18225 0.73654 0.77072 0.84861 1.93213 1.39156 1.94680 1.89250 1.93178 1.94764 1.33275 1.94890 1.93176 1.65748 1.88292 1.68764 1.21060 0.96317 1.00528 0.90644 1.21205 1.00568 0.94314 0.98526 0.93406 0.94973 0.92363 0.91485 0.95475 0.93992 0.92858 0.93952 0.93018 0.92392 0.83817 0.82964 0.83313 0.84656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.77 10.24 71.98 0.74 -5.04 16 2 C 0.13 6.11 5.97 86.38 0.52 6.63 16 3 N -0.60 -28.51 2.45 -702.01 -1.72 -30.24 16 4 C -0.27 -14.01 9.49 84.03 0.80 -13.21 16 5 H 0.06 3.00 7.92 -2.91 -0.02 2.97 16 6 C -0.04 -1.91 4.93 84.86 0.42 -1.49 16 7 N -0.92 -51.75 11.32 21.65 0.25 -51.51 16 8 Si 0.95 43.48 29.61 68.60 2.03 45.51 16 9 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 10 H -0.29 -13.46 7.11 99.48 0.71 -12.75 16 11 H -0.28 -12.67 7.11 99.48 0.71 -11.97 16 12 C 0.16 6.12 5.67 86.38 0.49 6.61 16 13 C -0.09 -3.23 5.67 29.85 0.17 -3.07 16 14 C -0.04 -1.18 5.13 -19.86 -0.10 -1.28 16 15 C -0.12 -3.03 9.70 22.27 0.22 -2.81 16 16 C -0.07 -1.43 9.40 22.27 0.21 -1.22 16 17 C -0.21 -4.63 5.45 -19.86 -0.11 -4.74 16 18 C 0.52 10.92 3.36 71.24 0.24 11.16 16 19 F -0.18 -3.99 17.30 44.97 0.78 -3.21 16 20 F -0.18 -3.85 16.46 44.97 0.74 -3.11 16 21 F -0.18 -3.74 16.46 44.97 0.74 -3.00 16 22 C -0.07 -1.53 9.40 22.27 0.21 -1.32 16 23 C -0.13 -3.35 9.70 22.27 0.22 -3.13 16 24 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 25 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 26 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 27 H 0.07 3.54 5.32 -2.39 -0.01 3.53 16 28 H 0.03 1.16 8.10 -2.39 -0.02 1.14 16 29 H 0.25 13.81 8.31 -92.71 -0.77 13.04 16 30 H 0.05 1.88 8.07 -2.39 -0.02 1.86 16 31 H 0.04 1.65 8.04 -2.39 -0.02 1.63 16 32 H 0.05 2.12 8.09 -2.38 -0.02 2.10 16 33 H 0.06 2.17 8.09 -2.39 -0.02 2.15 16 34 H 0.14 3.10 8.06 -2.91 -0.02 3.08 16 35 H 0.15 2.56 7.60 -2.91 -0.02 2.54 16 36 H 0.15 2.76 7.60 -2.91 -0.02 2.74 16 37 H 0.14 3.44 8.06 -2.91 -0.02 3.41 16 Total: -1.00 -57.57 326.74 7.89 -49.68 By element: Atomic # 1 Polarization: 7.72 SS G_CDS: 1.07 Total: 8.79 kcal Atomic # 6 Polarization: -16.92 SS G_CDS: 4.01 Total: -12.92 kcal Atomic # 7 Polarization: -80.27 SS G_CDS: -1.48 Total: -81.74 kcal Atomic # 9 Polarization: -11.58 SS G_CDS: 2.26 Total: -9.32 kcal Atomic # 14 Polarization: 43.48 SS G_CDS: 2.03 Total: 45.51 kcal Total: -57.57 7.89 -49.68 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000425533861.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.062 kcal (2) G-P(sol) polarization free energy of solvation -57.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.678 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds