Wall clock time and date at job start Tue Mar 31 2020 06:18:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46502 * 109.47354 * 2 1 4 4 C 1.46503 * 120.00115 * 273.74406 * 3 2 1 5 5 C 1.53779 * 113.60992 * 32.16634 * 4 3 2 6 6 C 1.53964 * 87.01912 * 220.04621 * 5 4 3 7 7 C 1.53781 * 113.61136 * 294.56195 * 4 3 2 8 8 S 1.65600 * 119.99930 * 93.74316 * 3 2 1 9 9 O 1.42099 * 104.27589 * 153.92784 * 8 3 2 10 10 O 1.42102 * 104.27478 * 26.07625 * 8 3 2 11 11 C 1.81394 * 104.44969 * 270.00028 * 8 3 2 12 12 C 1.53001 * 109.47216 * 186.31070 * 11 8 3 13 13 C 1.50701 * 115.54831 * 294.32639 * 12 11 8 14 14 H 1.08003 * 119.99820 * 95.15397 * 13 12 11 15 15 C 1.37876 * 120.00045 * 274.87474 * 13 12 11 16 16 N 1.31513 * 120.00255 * 355.49227 * 15 13 12 17 17 Si 1.86809 * 119.99761 * 175.48988 * 15 13 12 18 18 H 1.48501 * 109.46854 * 0.02562 * 17 15 13 19 19 H 1.48504 * 109.46783 * 120.00234 * 17 15 13 20 20 H 1.48493 * 109.46880 * 239.99963 * 17 15 13 21 21 C 1.53000 * 117.49729 * 79.99917 * 12 11 8 22 22 C 1.52999 * 117.49831 * 148.65872 * 12 11 8 23 23 H 1.09005 * 109.47015 * 305.03133 * 1 2 3 24 24 H 1.09000 * 109.47262 * 65.02590 * 1 2 3 25 25 H 1.08997 * 109.47063 * 185.03302 * 1 2 3 26 26 H 1.09000 * 109.47145 * 240.00242 * 2 1 3 27 27 H 1.08996 * 109.47590 * 120.00183 * 2 1 3 28 28 H 1.09001 * 112.84982 * 163.36161 * 4 3 2 29 29 H 1.08993 * 113.61840 * 334.56858 * 5 4 3 30 30 H 1.09000 * 113.61542 * 105.47551 * 5 4 3 31 31 H 1.08998 * 113.53603 * 270.81270 * 6 5 4 32 32 H 1.08994 * 113.66040 * 139.93641 * 6 5 4 33 33 H 1.08997 * 113.61498 * 254.52423 * 7 4 3 34 34 H 1.08993 * 113.61783 * 25.35140 * 7 4 3 35 35 H 1.09004 * 109.46970 * 66.30987 * 11 8 3 36 36 H 1.09000 * 109.47388 * 306.31238 * 11 8 3 37 37 H 0.96994 * 119.99962 * 185.00138 * 16 15 13 38 38 H 1.09002 * 117.49411 * 215.00388 * 21 12 11 39 39 H 1.08996 * 117.49715 * 0.02562 * 21 12 11 40 40 H 1.09002 * 117.49944 * 359.97438 * 22 12 11 41 41 H 1.09006 * 117.49786 * 144.97779 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1844 2.0995 -1.2660 5 6 1.1675 1.6901 -2.3444 6 6 2.3259 1.7753 -3.3550 7 6 3.2728 1.5033 -2.1742 8 16 2.3826 2.1306 1.4311 9 8 3.3482 3.1113 1.0772 10 8 2.7102 1.0644 2.3115 11 6 0.8297 2.9198 1.9369 12 6 1.0759 3.7822 3.1765 13 6 1.4644 3.0312 4.4240 14 1 2.5068 2.9126 4.6804 15 6 0.4888 2.5004 5.2410 16 7 -0.7806 2.7245 4.9806 17 14 0.9703 1.4628 6.7179 18 1 2.4501 1.3618 6.7906 19 1 0.4564 2.0982 7.9579 20 1 0.3871 0.1042 6.5796 21 6 1.6939 5.1655 2.9633 22 6 0.2173 5.0371 3.3459 23 1 -0.3633 0.5899 0.8415 24 1 -0.3634 0.4339 -0.9316 25 1 -0.3633 -1.0237 0.0902 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8899 28 1 2.2693 3.1780 -1.1328 29 1 0.7750 0.6817 -2.2141 30 1 0.3859 2.4313 -2.5114 31 1 2.4485 2.7654 -3.7941 32 1 2.3163 0.9792 -4.0995 33 1 4.1884 2.0939 -2.2040 34 1 3.4579 0.4440 -1.9964 35 1 0.0910 2.1525 2.1689 36 1 0.4597 3.5468 1.1258 37 1 -1.4640 2.4130 5.5945 38 1 2.3815 5.5323 3.7254 39 1 1.9246 5.4613 1.9399 40 1 -0.5227 5.2487 2.5741 41 1 -0.0668 5.3195 4.3597 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451210286.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:49 Heat of formation + Delta-G solvation = -28.101049 kcal Electronic energy + Delta-G solvation = -22483.155645 eV Core-core repulsion = 19298.848040 eV Total energy + Delta-G solvation = -3184.307605 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 287.134 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.27913 -36.73728 -36.33045 -35.09960 -34.55746 -32.01902 -29.99116 -28.18188 -25.65793 -25.45465 -24.68701 -22.54663 -21.16307 -19.58952 -19.26222 -18.42942 -17.29505 -16.54613 -16.10274 -15.34228 -14.98720 -14.74701 -14.41511 -13.80952 -13.73384 -13.62610 -13.09548 -12.89720 -12.39792 -12.27997 -12.06560 -11.94759 -11.78232 -11.41091 -11.31750 -11.22681 -11.00924 -10.94785 -10.90001 -10.70371 -10.55876 -10.43196 -10.42350 -10.20258 -10.05852 -9.60192 -9.03520 -8.74859 -8.52668 -8.03614 -6.11712 -4.23746 1.06148 3.29145 3.32663 3.37540 3.46286 4.38534 4.51246 4.57530 4.66954 4.79412 4.88730 4.93149 5.06827 5.17994 5.22656 5.36460 5.43995 5.54767 5.62842 5.67338 5.70672 5.78119 5.84272 5.92165 5.98554 6.00991 6.12057 6.21495 6.26626 6.36220 6.44208 6.57417 6.65249 6.75104 6.94340 7.03413 7.25737 7.47429 7.81425 8.22077 8.82411 9.47618 10.94945 Molecular weight = 287.13amu Principal moments of inertia in cm(-1) A = 0.022588 B = 0.006104 C = 0.005668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1239.303198 B = 4586.144498 C = 4938.603718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.111 3.889 3 N -0.998 5.998 4 C 0.132 3.868 5 C -0.154 4.154 6 C -0.141 4.141 7 C -0.152 4.152 8 S 2.603 3.397 9 O -0.970 6.970 10 O -0.950 6.950 11 C -0.554 4.554 12 C 0.038 3.962 13 C -0.512 4.512 14 H 0.068 0.932 15 C 0.080 3.920 16 N -0.875 5.875 17 Si 0.891 3.109 18 H -0.267 1.267 19 H -0.283 1.283 20 H -0.280 1.280 21 C -0.209 4.209 22 C -0.134 4.134 23 H 0.063 0.937 24 H 0.063 0.937 25 H 0.064 0.936 26 H 0.074 0.926 27 H 0.094 0.906 28 H 0.113 0.887 29 H 0.094 0.906 30 H 0.070 0.930 31 H 0.081 0.919 32 H 0.068 0.932 33 H 0.072 0.928 34 H 0.084 0.916 35 H 0.129 0.871 36 H 0.098 0.902 37 H 0.262 0.738 38 H 0.086 0.914 39 H 0.073 0.927 40 H 0.064 0.936 41 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.930 -3.077 -14.601 14.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.014 4.014 3 N -0.832 5.832 4 C 0.025 3.975 5 C -0.193 4.193 6 C -0.179 4.179 7 C -0.192 4.192 8 S 2.702 3.298 9 O -0.961 6.961 10 O -0.941 6.941 11 C -0.686 4.686 12 C 0.035 3.965 13 C -0.549 4.549 14 H 0.086 0.914 15 C -0.125 4.125 16 N -0.511 5.511 17 Si 0.718 3.282 18 H -0.191 1.191 19 H -0.209 1.209 20 H -0.205 1.205 21 C -0.247 4.247 22 C -0.173 4.173 23 H 0.082 0.918 24 H 0.082 0.918 25 H 0.083 0.917 26 H 0.093 0.907 27 H 0.112 0.888 28 H 0.131 0.869 29 H 0.113 0.887 30 H 0.089 0.911 31 H 0.099 0.901 32 H 0.087 0.913 33 H 0.090 0.910 34 H 0.102 0.898 35 H 0.147 0.853 36 H 0.116 0.884 37 H 0.071 0.929 38 H 0.104 0.896 39 H 0.092 0.908 40 H 0.082 0.918 41 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 1.614 -3.234 -14.147 14.602 hybrid contribution -0.758 -0.385 0.648 1.069 sum 0.856 -3.620 -13.499 14.002 Atomic orbital electron populations 1.22488 0.96377 1.02463 1.02957 1.21228 0.93975 0.82404 1.03801 1.57942 1.81933 1.22036 1.21276 1.22290 0.96253 0.96749 0.82230 1.23584 0.97107 1.02945 0.95648 1.22743 0.96829 1.01984 0.96340 1.23377 0.98157 1.01946 0.95686 1.05314 0.77783 0.74555 0.72166 1.93487 1.57690 1.62450 1.82439 1.93513 1.82882 1.53938 1.63730 1.30087 1.19961 1.11958 1.06641 1.18315 1.01345 0.85294 0.91506 1.20572 0.93504 1.34516 1.06339 0.91404 1.24960 0.94772 0.95077 0.97685 1.70013 0.99524 1.45204 1.36312 0.86528 0.79501 0.80365 0.81801 1.19108 1.20941 1.20543 1.23194 0.97394 1.03746 1.00324 1.22511 0.90741 1.03275 1.00792 0.91812 0.91825 0.91681 0.90736 0.88767 0.86877 0.88731 0.91109 0.90070 0.91286 0.90959 0.89760 0.85281 0.88392 0.92852 0.89590 0.90822 0.91750 0.89253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.26 9.87 37.15 0.37 -1.89 16 2 C 0.11 1.51 5.56 -4.04 -0.02 1.48 16 3 N -1.00 -15.52 2.93 -106.44 -0.31 -15.83 16 4 C 0.13 1.73 3.97 -67.12 -0.27 1.46 16 5 C -0.15 -1.56 6.67 -25.82 -0.17 -1.73 16 6 C -0.14 -1.28 8.09 -25.82 -0.21 -1.49 16 7 C -0.15 -1.74 7.66 -25.92 -0.20 -1.94 16 8 S 2.60 53.64 5.15 -107.50 -0.55 53.09 16 9 O -0.97 -21.54 16.91 -57.54 -0.97 -22.51 16 10 O -0.95 -22.74 16.23 -57.54 -0.93 -23.68 16 11 C -0.55 -11.73 5.99 37.16 0.22 -11.51 16 12 C 0.04 0.93 1.42 -155.66 -0.22 0.71 16 13 C -0.51 -14.17 8.23 -34.44 -0.28 -14.46 16 14 H 0.07 1.93 7.82 -52.48 -0.41 1.52 16 15 C 0.08 2.19 5.43 -17.82 -0.10 2.10 16 16 N -0.87 -24.21 12.65 55.43 0.70 -23.51 16 17 Si 0.89 21.65 29.54 -169.99 -5.02 16.62 16 18 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 19 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 20 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 21 C -0.21 -4.68 9.96 -26.69 -0.27 -4.94 16 22 C -0.13 -3.11 9.14 -26.69 -0.24 -3.35 16 23 H 0.06 0.91 6.98 -51.93 -0.36 0.55 16 24 H 0.06 0.67 5.68 -51.93 -0.30 0.38 16 25 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 26 H 0.07 0.81 6.56 -51.93 -0.34 0.47 16 27 H 0.09 1.42 6.84 -51.93 -0.36 1.07 16 28 H 0.11 1.52 7.55 -51.93 -0.39 1.13 16 29 H 0.09 0.91 4.90 -51.93 -0.25 0.65 16 30 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 31 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 33 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 34 H 0.08 0.93 7.26 -51.93 -0.38 0.56 16 35 H 0.13 2.82 7.03 -51.92 -0.36 2.45 16 36 H 0.10 1.77 8.09 -51.92 -0.42 1.35 16 37 H 0.26 6.88 8.32 -40.82 -0.34 6.54 16 38 H 0.09 1.90 8.14 -51.93 -0.42 1.48 16 39 H 0.07 1.49 8.14 -51.93 -0.42 1.07 16 40 H 0.06 1.36 8.14 -51.93 -0.42 0.94 16 41 H 0.09 2.20 8.14 -51.93 -0.42 1.78 16 LS Contribution 336.99 15.07 5.08 5.08 Total: -1.00 -31.89 336.99 -9.92 -41.80 By element: Atomic # 1 Polarization: 11.01 SS G_CDS: -6.51 Total: 4.50 kcal Atomic # 6 Polarization: -34.17 SS G_CDS: -1.39 Total: -35.56 kcal Atomic # 7 Polarization: -39.73 SS G_CDS: 0.39 Total: -39.34 kcal Atomic # 8 Polarization: -44.28 SS G_CDS: -1.91 Total: -46.19 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.62 kcal Atomic # 16 Polarization: 53.64 SS G_CDS: -0.55 Total: 53.09 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -31.89 -9.92 -41.80 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451210286.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.701 kcal (2) G-P(sol) polarization free energy of solvation -31.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.803 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds