Wall clock time and date at job start Tue Mar 31 2020 06:18:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46502 * 109.47354 * 2 1 4 4 C 1.46503 * 120.00115 * 273.74406 * 3 2 1 5 5 C 1.53779 * 113.60992 * 32.16634 * 4 3 2 6 6 C 1.53964 * 87.01912 * 220.04621 * 5 4 3 7 7 C 1.53781 * 113.61136 * 294.56195 * 4 3 2 8 8 S 1.65600 * 119.99930 * 93.74316 * 3 2 1 9 9 O 1.42099 * 104.27589 * 153.92784 * 8 3 2 10 10 O 1.42102 * 104.27478 * 26.07625 * 8 3 2 11 11 C 1.81394 * 104.44969 * 270.00028 * 8 3 2 12 12 C 1.53001 * 109.47216 * 186.31070 * 11 8 3 13 13 C 1.50701 * 115.54831 * 294.32639 * 12 11 8 14 14 H 1.08003 * 119.99820 * 95.15397 * 13 12 11 15 15 C 1.37876 * 120.00045 * 274.87474 * 13 12 11 16 16 N 1.31513 * 120.00255 * 355.49227 * 15 13 12 17 17 Si 1.86809 * 119.99761 * 175.48988 * 15 13 12 18 18 H 1.48501 * 109.46854 * 0.02562 * 17 15 13 19 19 H 1.48504 * 109.46783 * 120.00234 * 17 15 13 20 20 H 1.48493 * 109.46880 * 239.99963 * 17 15 13 21 21 C 1.53000 * 117.49729 * 79.99917 * 12 11 8 22 22 C 1.52999 * 117.49831 * 148.65872 * 12 11 8 23 23 H 1.09005 * 109.47015 * 305.03133 * 1 2 3 24 24 H 1.09000 * 109.47262 * 65.02590 * 1 2 3 25 25 H 1.08997 * 109.47063 * 185.03302 * 1 2 3 26 26 H 1.09000 * 109.47145 * 240.00242 * 2 1 3 27 27 H 1.08996 * 109.47590 * 120.00183 * 2 1 3 28 28 H 1.09001 * 112.84982 * 163.36161 * 4 3 2 29 29 H 1.08993 * 113.61840 * 334.56858 * 5 4 3 30 30 H 1.09000 * 113.61542 * 105.47551 * 5 4 3 31 31 H 1.08998 * 113.53603 * 270.81270 * 6 5 4 32 32 H 1.08994 * 113.66040 * 139.93641 * 6 5 4 33 33 H 1.08997 * 113.61498 * 254.52423 * 7 4 3 34 34 H 1.08993 * 113.61783 * 25.35140 * 7 4 3 35 35 H 1.09004 * 109.46970 * 66.30987 * 11 8 3 36 36 H 1.09000 * 109.47388 * 306.31238 * 11 8 3 37 37 H 0.96994 * 119.99962 * 185.00138 * 16 15 13 38 38 H 1.09002 * 117.49411 * 215.00388 * 21 12 11 39 39 H 1.08996 * 117.49715 * 0.02562 * 21 12 11 40 40 H 1.09002 * 117.49944 * 359.97438 * 22 12 11 41 41 H 1.09006 * 117.49786 * 144.97779 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1844 2.0995 -1.2660 5 6 1.1675 1.6901 -2.3444 6 6 2.3259 1.7753 -3.3550 7 6 3.2728 1.5033 -2.1742 8 16 2.3826 2.1306 1.4311 9 8 3.3482 3.1113 1.0772 10 8 2.7102 1.0644 2.3115 11 6 0.8297 2.9198 1.9369 12 6 1.0759 3.7822 3.1765 13 6 1.4644 3.0312 4.4240 14 1 2.5068 2.9126 4.6804 15 6 0.4888 2.5004 5.2410 16 7 -0.7806 2.7245 4.9806 17 14 0.9703 1.4628 6.7179 18 1 2.4501 1.3618 6.7906 19 1 0.4564 2.0982 7.9579 20 1 0.3871 0.1042 6.5796 21 6 1.6939 5.1655 2.9633 22 6 0.2173 5.0371 3.3459 23 1 -0.3633 0.5899 0.8415 24 1 -0.3634 0.4339 -0.9316 25 1 -0.3633 -1.0237 0.0902 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8899 28 1 2.2693 3.1780 -1.1328 29 1 0.7750 0.6817 -2.2141 30 1 0.3859 2.4313 -2.5114 31 1 2.4485 2.7654 -3.7941 32 1 2.3163 0.9792 -4.0995 33 1 4.1884 2.0939 -2.2040 34 1 3.4579 0.4440 -1.9964 35 1 0.0910 2.1525 2.1689 36 1 0.4597 3.5468 1.1258 37 1 -1.4640 2.4130 5.5945 38 1 2.3815 5.5323 3.7254 39 1 1.9246 5.4613 1.9399 40 1 -0.5227 5.2487 2.5741 41 1 -0.0668 5.3195 4.3597 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000451210286.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:49 Heat of formation + Delta-G solvation = -48.252480 kcal Electronic energy + Delta-G solvation = -22484.029477 eV Core-core repulsion = 19298.848040 eV Total energy + Delta-G solvation = -3185.181437 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 287.134 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.21872 -38.58829 -38.03458 -36.80281 -35.65716 -34.09917 -31.07035 -29.90340 -27.52841 -26.48538 -25.61238 -23.65079 -22.98609 -21.36213 -20.35131 -19.74377 -18.75007 -18.40562 -17.44586 -16.85533 -16.72037 -16.14660 -15.95416 -15.58066 -15.05066 -14.70678 -14.61085 -13.88238 -13.82635 -13.73753 -13.36627 -13.26931 -13.19585 -13.06530 -12.92616 -12.87262 -12.76351 -12.46932 -12.45975 -12.23757 -11.98530 -11.90117 -11.65660 -11.43709 -11.36432 -11.09972 -11.00034 -10.53303 -10.11044 -9.69414 -8.20617 -6.36977 -0.53406 1.33809 1.38225 1.49971 1.92435 2.37383 2.98309 3.05461 3.32112 3.40025 3.59670 3.79949 3.92254 3.98807 4.05847 4.07020 4.23607 4.37603 4.41698 4.49810 4.56053 4.61678 4.80588 4.82309 4.87083 4.95022 4.96664 4.98098 5.15667 5.16424 5.18900 5.23345 5.29947 5.38416 5.47201 5.60751 5.64965 5.69855 5.83519 6.20415 6.69666 7.35561 8.85744 Molecular weight = 287.13amu Principal moments of inertia in cm(-1) A = 0.022588 B = 0.006104 C = 0.005668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1239.303198 B = 4586.144498 C = 4938.603718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.105 3.895 3 N -0.988 5.988 4 C 0.107 3.893 5 C -0.144 4.144 6 C -0.126 4.126 7 C -0.158 4.158 8 S 2.614 3.386 9 O -0.992 6.992 10 O -0.993 6.993 11 C -0.550 4.550 12 C 0.005 3.995 13 C -0.532 4.532 14 H 0.045 0.955 15 C 0.042 3.958 16 N -0.892 5.892 17 Si 0.934 3.066 18 H -0.275 1.275 19 H -0.269 1.269 20 H -0.274 1.274 21 C -0.198 4.198 22 C -0.130 4.130 23 H 0.037 0.963 24 H 0.085 0.915 25 H 0.083 0.917 26 H 0.109 0.891 27 H 0.072 0.928 28 H 0.107 0.893 29 H 0.104 0.896 30 H 0.081 0.919 31 H 0.090 0.910 32 H 0.088 0.912 33 H 0.064 0.936 34 H 0.087 0.913 35 H 0.118 0.882 36 H 0.129 0.871 37 H 0.266 0.734 38 H 0.080 0.920 39 H 0.098 0.902 40 H 0.086 0.914 41 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.177 -3.548 -16.982 17.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.020 4.020 3 N -0.824 5.824 4 C 0.001 3.999 5 C -0.183 4.183 6 C -0.164 4.164 7 C -0.197 4.197 8 S 2.713 3.287 9 O -0.982 6.982 10 O -0.984 6.984 11 C -0.683 4.683 12 C 0.003 3.997 13 C -0.569 4.569 14 H 0.064 0.936 15 C -0.161 4.161 16 N -0.528 5.528 17 Si 0.759 3.241 18 H -0.200 1.200 19 H -0.194 1.194 20 H -0.199 1.199 21 C -0.235 4.235 22 C -0.169 4.169 23 H 0.056 0.944 24 H 0.104 0.896 25 H 0.102 0.898 26 H 0.127 0.873 27 H 0.090 0.910 28 H 0.125 0.875 29 H 0.122 0.878 30 H 0.100 0.900 31 H 0.109 0.891 32 H 0.107 0.893 33 H 0.083 0.917 34 H 0.106 0.894 35 H 0.136 0.864 36 H 0.147 0.853 37 H 0.075 0.925 38 H 0.099 0.901 39 H 0.116 0.884 40 H 0.105 0.895 41 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 0.857 -3.690 -16.515 16.944 hybrid contribution -0.484 -0.239 1.322 1.428 sum 0.374 -3.930 -15.194 15.698 Atomic orbital electron populations 1.22493 0.95178 1.03434 1.02998 1.21449 0.95008 0.81161 1.04371 1.57572 1.81926 1.22618 1.20324 1.22759 0.99096 0.96522 0.81484 1.23587 0.97113 1.03702 0.93936 1.22708 0.94730 1.03260 0.95690 1.23452 0.97902 1.01902 0.96473 1.04644 0.77407 0.73872 0.72796 1.93444 1.58540 1.63252 1.82963 1.93451 1.83619 1.55180 1.66107 1.29974 1.20276 1.11773 1.06228 1.18457 1.03043 0.86249 0.91923 1.20721 0.92581 1.35452 1.08171 0.93642 1.25508 0.94926 0.95890 0.99752 1.70051 0.99863 1.45805 1.37087 0.85867 0.78675 0.79500 0.80031 1.20018 1.19413 1.19907 1.23234 0.96784 1.02005 1.01494 1.22445 0.91669 1.02470 1.00347 0.94363 0.89607 0.89839 0.87337 0.90991 0.87549 0.87758 0.89987 0.89130 0.89329 0.91720 0.89402 0.86354 0.85275 0.92521 0.90121 0.88411 0.89544 0.91407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.10 9.87 71.98 0.71 -3.39 16 2 C 0.10 2.67 5.56 86.38 0.48 3.15 16 3 N -0.99 -29.60 2.93 -490.67 -1.44 -31.04 16 4 C 0.11 2.58 3.97 45.52 0.18 2.77 16 5 C -0.14 -2.39 6.67 31.18 0.21 -2.18 16 6 C -0.13 -1.81 8.09 31.18 0.25 -1.56 16 7 C -0.16 -3.23 7.66 31.12 0.24 -2.99 16 8 S 2.61 108.56 5.15 -56.49 -0.29 108.27 16 9 O -0.99 -44.22 16.91 -127.65 -2.16 -46.38 16 10 O -0.99 -49.09 16.23 -127.65 -2.07 -51.16 16 11 C -0.55 -23.21 5.99 71.98 0.43 -22.78 16 12 C 0.01 0.27 1.42 -52.93 -0.07 0.19 16 13 C -0.53 -30.21 8.23 25.60 0.21 -30.00 16 14 H 0.05 2.70 7.82 -2.91 -0.02 2.68 16 15 C 0.04 2.34 5.43 84.65 0.46 2.80 16 16 N -0.89 -49.74 12.65 21.45 0.27 -49.47 16 17 Si 0.93 44.86 29.54 68.60 2.03 46.89 16 18 H -0.28 -13.48 7.11 99.48 0.71 -12.78 16 19 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 20 H -0.27 -12.79 7.11 99.48 0.71 -12.09 16 21 C -0.20 -8.77 9.96 30.62 0.30 -8.46 16 22 C -0.13 -6.00 9.14 30.62 0.28 -5.72 16 23 H 0.04 1.06 6.98 -2.38 -0.02 1.04 16 24 H 0.09 1.52 5.68 -2.39 -0.01 1.51 16 25 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 26 H 0.11 2.04 6.56 -2.39 -0.02 2.02 16 27 H 0.07 2.17 6.84 -2.39 -0.02 2.16 16 28 H 0.11 2.69 7.55 -2.39 -0.02 2.67 16 29 H 0.10 1.53 4.90 -2.39 -0.01 1.52 16 30 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 31 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 32 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 33 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 34 H 0.09 1.72 7.26 -2.39 -0.02 1.70 16 35 H 0.12 5.24 7.03 -2.39 -0.02 5.22 16 36 H 0.13 4.46 8.09 -2.39 -0.02 4.44 16 37 H 0.27 13.99 8.32 -92.71 -0.77 13.22 16 38 H 0.08 3.60 8.14 -2.39 -0.02 3.58 16 39 H 0.10 3.81 8.14 -2.39 -0.02 3.79 16 40 H 0.09 3.53 8.14 -2.39 -0.02 3.51 16 41 H 0.07 3.38 8.14 -2.38 -0.02 3.36 16 Total: -1.00 -69.78 336.99 1.03 -68.75 By element: Atomic # 1 Polarization: 21.29 SS G_CDS: 1.01 Total: 22.30 kcal Atomic # 6 Polarization: -71.84 SS G_CDS: 3.68 Total: -68.16 kcal Atomic # 7 Polarization: -79.34 SS G_CDS: -1.16 Total: -80.50 kcal Atomic # 8 Polarization: -93.31 SS G_CDS: -4.23 Total: -97.54 kcal Atomic # 14 Polarization: 44.86 SS G_CDS: 2.03 Total: 46.89 kcal Atomic # 16 Polarization: 108.56 SS G_CDS: -0.29 Total: 108.27 kcal Total: -69.78 1.03 -68.75 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451210286.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.498 kcal (2) G-P(sol) polarization free energy of solvation -69.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.750 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds