Wall clock time and date at job start Tue Mar 31 2020 06:29:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.42901 * 109.47059 * 2 1 4 4 C 1.42898 * 113.99877 * 179.97438 * 3 2 1 5 5 H 1.08996 * 109.47584 * 30.00524 * 4 3 2 6 6 C 1.52996 * 109.47379 * 270.00070 * 4 3 2 7 7 C 1.52997 * 109.47165 * 180.02562 * 6 4 3 8 8 C 1.52999 * 109.47592 * 60.00300 * 7 6 4 9 9 C 1.53006 * 109.46626 * 300.00035 * 8 7 6 10 10 C 1.52997 * 109.47164 * 59.99702 * 9 8 7 11 11 H 1.09000 * 109.47140 * 60.00051 * 10 9 8 12 12 N 1.46496 * 109.47079 * 179.97438 * 10 9 8 13 13 C 1.34776 * 120.00539 * 274.99997 * 12 10 9 14 14 O 1.21283 * 119.99829 * 0.02562 * 13 12 10 15 15 C 1.50696 * 120.00312 * 179.97438 * 13 12 10 16 16 S 1.80995 * 109.47298 * 180.02562 * 15 13 12 17 17 C 1.76203 * 100.00310 * 180.02562 * 16 15 13 18 18 H 1.08001 * 119.99634 * 359.97438 * 17 16 15 19 19 C 1.38796 * 120.00415 * 179.97438 * 17 16 15 20 20 N 1.31624 * 120.00246 * 179.97438 * 19 17 16 21 21 Si 1.86804 * 119.99680 * 359.97438 * 19 17 16 22 22 H 1.48502 * 109.47048 * 90.00319 * 21 19 17 23 23 H 1.48500 * 109.46948 * 209.99855 * 21 19 17 24 24 H 1.48502 * 109.47277 * 329.99838 * 21 19 17 25 25 H 1.08999 * 109.47349 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47590 * 299.99647 * 1 2 3 27 27 H 1.09009 * 109.47610 * 59.99942 * 1 2 3 28 28 H 1.09005 * 109.47282 * 240.00610 * 2 1 3 29 29 H 1.09000 * 109.47588 * 120.00327 * 2 1 3 30 30 H 1.09000 * 109.47054 * 300.00245 * 6 4 3 31 31 H 1.09001 * 109.46997 * 59.99978 * 6 4 3 32 32 H 1.09000 * 109.47140 * 299.99954 * 7 6 4 33 33 H 1.09002 * 109.47045 * 180.02562 * 7 6 4 34 34 H 1.08993 * 109.47839 * 180.02562 * 8 7 6 35 35 H 1.09000 * 109.47160 * 59.99666 * 8 7 6 36 36 H 1.09001 * 109.46998 * 179.97438 * 9 8 7 37 37 H 1.09000 * 109.47050 * 299.99699 * 9 8 7 38 38 H 0.97008 * 119.99554 * 95.00236 * 12 10 9 39 39 H 1.09007 * 109.47162 * 300.00292 * 15 13 12 40 40 H 1.09002 * 109.46946 * 59.99986 * 15 13 12 41 41 H 0.96995 * 120.00407 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4601 0.0006 5 1 3.8635 0.6016 -0.5130 6 6 3.9386 1.5006 1.4432 7 6 5.4638 1.6220 1.4438 8 6 5.8734 2.9078 0.7228 9 6 5.3655 2.8673 -0.7199 10 6 3.8404 2.7459 -0.7205 11 1 3.4073 3.6042 -0.2068 12 7 3.3541 2.7078 -2.1019 13 6 3.1337 3.8569 -2.7708 14 8 3.3384 4.9226 -2.2292 15 6 2.6340 3.8176 -4.1919 16 16 2.4391 5.5076 -4.8099 17 6 1.8612 5.1725 -6.4404 18 1 1.7326 4.1516 -6.7685 19 6 1.5711 6.2204 -7.3030 20 7 1.1399 5.9701 -8.5212 21 14 1.7928 7.9862 -6.7352 22 1 3.1724 8.4375 -7.0489 23 1 0.8156 8.8578 -7.4356 24 1 1.5668 8.0670 -5.2697 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3635 0.5139 -0.8900 28 1 1.8933 -0.5138 -0.8901 29 1 1.8934 -0.5139 0.8899 30 1 3.5059 2.3591 1.9568 31 1 3.6465 0.5847 1.9571 32 1 5.8968 0.7637 0.9301 33 1 5.8256 1.6504 2.4716 34 1 6.9599 2.9941 0.7228 35 1 5.4404 3.7661 1.2365 36 1 5.6569 3.7835 -1.2335 37 1 5.7985 2.0090 -1.2336 38 1 3.1906 1.8553 -2.5351 39 1 3.3518 3.2838 -4.8149 40 1 1.6725 3.3051 -4.2249 41 1 0.9376 6.7024 -9.1241 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000456967730.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:29:04 Heat of formation + Delta-G solvation = -109.522865 kcal Electronic energy + Delta-G solvation = -20908.397614 eV Core-core repulsion = 17720.559294 eV Total energy + Delta-G solvation = -3187.838320 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 287.134 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.16471 -38.53053 -36.79211 -34.03685 -32.41223 -31.73337 -30.56593 -29.55801 -27.90994 -25.57930 -23.42146 -22.64616 -22.39236 -20.39308 -20.06644 -17.89971 -17.16754 -16.44699 -16.33458 -15.80700 -15.11564 -14.96386 -14.78593 -14.27024 -14.13231 -13.74375 -13.70562 -13.30112 -13.24274 -12.91500 -12.76597 -12.51129 -12.17054 -11.90743 -11.71540 -11.43632 -11.24307 -11.21331 -11.05042 -10.98438 -10.91370 -10.60977 -10.49727 -9.85693 -9.75454 -9.37191 -8.98123 -8.86369 -8.45970 -6.87785 -6.26310 -3.97426 2.80908 3.05857 3.33101 3.34243 3.36767 3.53455 3.69246 4.35918 4.37696 4.56873 4.67235 4.78028 4.79493 4.80883 4.91217 4.96205 5.03869 5.10874 5.12885 5.17260 5.20024 5.39023 5.40634 5.50744 5.64137 5.67995 5.74342 5.75824 5.82217 5.89005 5.89721 5.93400 6.06661 6.09445 6.16516 6.64709 7.01930 7.70001 7.96882 8.44313 8.58344 9.20119 10.83038 Molecular weight = 287.13amu Principal moments of inertia in cm(-1) A = 0.021650 B = 0.003773 C = 0.003363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1292.977544 B = 7419.785396 C = 8322.950057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.057 3.943 3 O -0.374 6.374 4 C 0.085 3.915 5 H 0.063 0.937 6 C -0.138 4.138 7 C -0.118 4.118 8 C -0.119 4.119 9 C -0.129 4.129 10 C 0.153 3.847 11 H 0.095 0.905 12 N -0.726 5.726 13 C 0.534 3.466 14 O -0.520 6.520 15 C -0.123 4.123 16 S -0.141 6.141 17 C -0.521 4.521 18 H 0.088 0.912 19 C 0.096 3.904 20 N -0.882 5.882 21 Si 0.856 3.144 22 H -0.267 1.267 23 H -0.274 1.274 24 H -0.235 1.235 25 H 0.069 0.931 26 H 0.062 0.938 27 H 0.066 0.934 28 H 0.047 0.953 29 H 0.045 0.955 30 H 0.075 0.925 31 H 0.066 0.934 32 H 0.062 0.938 33 H 0.067 0.933 34 H 0.067 0.933 35 H 0.067 0.933 36 H 0.078 0.922 37 H 0.064 0.936 38 H 0.397 0.603 39 H 0.095 0.905 40 H 0.096 0.904 41 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.189 -14.578 20.201 25.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.020 4.020 3 O -0.293 6.293 4 C 0.027 3.973 5 H 0.081 0.919 6 C -0.176 4.176 7 C -0.156 4.156 8 C -0.157 4.157 9 C -0.167 4.167 10 C 0.048 3.952 11 H 0.113 0.887 12 N -0.379 5.379 13 C 0.320 3.680 14 O -0.395 6.395 15 C -0.274 4.274 16 S 0.085 5.915 17 C -0.668 4.668 18 H 0.106 0.894 19 C -0.113 4.113 20 N -0.518 5.518 21 Si 0.681 3.319 22 H -0.192 1.192 23 H -0.200 1.200 24 H -0.159 1.159 25 H 0.088 0.912 26 H 0.081 0.919 27 H 0.085 0.915 28 H 0.065 0.935 29 H 0.063 0.937 30 H 0.093 0.907 31 H 0.085 0.915 32 H 0.081 0.919 33 H 0.085 0.915 34 H 0.086 0.914 35 H 0.086 0.914 36 H 0.097 0.903 37 H 0.083 0.917 38 H 0.230 0.770 39 H 0.114 0.886 40 H 0.115 0.885 41 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 6.326 -12.562 20.918 25.207 hybrid contribution -0.177 -1.226 -0.941 1.555 sum 6.149 -13.788 19.978 25.040 Atomic orbital electron populations 1.21743 0.93643 1.02124 1.03453 1.22506 0.95780 0.83935 0.99739 1.88025 1.20215 1.26129 1.94970 1.22362 0.81652 0.97589 0.95699 0.91861 1.22003 0.96140 1.03010 0.96441 1.21532 0.94877 0.98295 1.00855 1.21536 1.00920 0.97971 0.95309 1.21942 0.94366 1.03222 0.97217 1.20958 0.93777 0.98003 0.82478 0.88733 1.45871 1.69358 1.08826 1.13832 1.20225 0.76531 0.83572 0.87698 1.90687 1.50372 1.29406 1.69047 1.23273 1.04398 1.04994 0.94729 1.84770 1.87301 1.03614 1.15835 1.22333 1.50988 0.97611 0.95913 0.89438 1.24706 0.93284 0.99317 0.93973 1.69936 1.43118 1.32990 1.05788 0.86737 0.79073 0.84234 0.81829 1.19223 1.19964 1.15885 0.91239 0.91894 0.91523 0.93451 0.93661 0.90668 0.91529 0.91884 0.91467 0.91425 0.91387 0.90345 0.91718 0.76968 0.88648 0.88531 0.91972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.25 10.28 37.15 0.38 -0.86 16 2 C 0.06 0.48 6.47 37.15 0.24 0.73 16 3 O -0.37 -4.24 9.85 -35.23 -0.35 -4.58 16 4 C 0.09 0.82 2.13 -26.73 -0.06 0.77 16 5 H 0.06 0.52 7.79 -51.93 -0.40 0.12 16 6 C -0.14 -1.12 5.54 -26.73 -0.15 -1.26 16 7 C -0.12 -0.83 5.92 -26.73 -0.16 -0.99 16 8 C -0.12 -1.02 5.92 -26.73 -0.16 -1.18 16 9 C -0.13 -1.37 5.49 -26.73 -0.15 -1.52 16 10 C 0.15 1.86 2.14 -67.93 -0.15 1.72 16 11 H 0.09 1.41 7.58 -51.93 -0.39 1.01 16 12 N -0.73 -9.92 4.94 -53.81 -0.27 -10.19 16 13 C 0.53 9.82 7.81 -10.99 -0.09 9.74 16 14 O -0.52 -11.48 15.52 5.55 0.09 -11.40 16 15 C -0.12 -2.46 6.16 36.00 0.22 -2.24 16 16 S -0.14 -3.66 18.55 -107.50 -1.99 -5.65 16 17 C -0.52 -15.22 10.04 30.94 0.31 -14.91 16 18 H 0.09 2.66 8.03 -52.49 -0.42 2.24 16 19 C 0.10 2.83 5.50 -17.43 -0.10 2.74 16 20 N -0.88 -26.87 13.97 55.49 0.78 -26.10 16 21 Si 0.86 22.06 27.74 -169.99 -4.71 17.34 16 22 H -0.27 -6.78 7.11 56.52 0.40 -6.38 16 23 H -0.27 -6.79 7.11 56.52 0.40 -6.39 16 24 H -0.23 -6.06 6.74 56.52 0.38 -5.68 16 25 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.07 0.62 8.14 -51.92 -0.42 0.20 16 28 H 0.05 0.36 8.09 -51.93 -0.42 -0.06 16 29 H 0.05 0.32 7.87 -51.93 -0.41 -0.08 16 30 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.07 0.47 7.87 -51.93 -0.41 0.06 16 32 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 37 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.40 4.42 8.60 -40.82 -0.35 4.07 16 39 H 0.10 1.76 8.14 -51.91 -0.42 1.33 16 40 H 0.10 1.82 8.14 -51.92 -0.42 1.40 16 41 H 0.27 7.65 8.31 -40.82 -0.34 7.31 16 LS Contribution 346.77 15.07 5.23 5.23 Total: -1.00 -33.93 346.77 -8.11 -42.04 By element: Atomic # 1 Polarization: 7.62 SS G_CDS: -7.04 Total: 0.58 kcal Atomic # 6 Polarization: -7.44 SS G_CDS: 0.16 Total: -7.28 kcal Atomic # 7 Polarization: -36.79 SS G_CDS: 0.51 Total: -36.28 kcal Atomic # 8 Polarization: -15.72 SS G_CDS: -0.26 Total: -15.98 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -4.71 Total: 17.34 kcal Atomic # 16 Polarization: -3.66 SS G_CDS: -1.99 Total: -5.65 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -33.93 -8.11 -42.04 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000456967730.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.479 kcal (2) G-P(sol) polarization free energy of solvation -33.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.044 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds