Wall clock time and date at job start Tue Mar 31 2020 06:29:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.42901 * 109.47059 * 2 1 4 4 C 1.42898 * 113.99877 * 179.97438 * 3 2 1 5 5 H 1.08996 * 109.47584 * 30.00524 * 4 3 2 6 6 C 1.52996 * 109.47379 * 270.00070 * 4 3 2 7 7 C 1.52997 * 109.47165 * 180.02562 * 6 4 3 8 8 C 1.52999 * 109.47592 * 60.00300 * 7 6 4 9 9 C 1.53006 * 109.46626 * 300.00035 * 8 7 6 10 10 C 1.52997 * 109.47164 * 59.99702 * 9 8 7 11 11 H 1.09000 * 109.47140 * 60.00051 * 10 9 8 12 12 N 1.46496 * 109.47079 * 179.97438 * 10 9 8 13 13 C 1.34776 * 120.00539 * 274.99997 * 12 10 9 14 14 O 1.21283 * 119.99829 * 0.02562 * 13 12 10 15 15 C 1.50696 * 120.00312 * 179.97438 * 13 12 10 16 16 S 1.80995 * 109.47298 * 180.02562 * 15 13 12 17 17 C 1.76203 * 100.00310 * 180.02562 * 16 15 13 18 18 H 1.08001 * 119.99634 * 359.97438 * 17 16 15 19 19 C 1.38796 * 120.00415 * 179.97438 * 17 16 15 20 20 N 1.31624 * 120.00246 * 179.97438 * 19 17 16 21 21 Si 1.86804 * 119.99680 * 359.97438 * 19 17 16 22 22 H 1.48502 * 109.47048 * 90.00319 * 21 19 17 23 23 H 1.48500 * 109.46948 * 209.99855 * 21 19 17 24 24 H 1.48502 * 109.47277 * 329.99838 * 21 19 17 25 25 H 1.08999 * 109.47349 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47590 * 299.99647 * 1 2 3 27 27 H 1.09009 * 109.47610 * 59.99942 * 1 2 3 28 28 H 1.09005 * 109.47282 * 240.00610 * 2 1 3 29 29 H 1.09000 * 109.47588 * 120.00327 * 2 1 3 30 30 H 1.09000 * 109.47054 * 300.00245 * 6 4 3 31 31 H 1.09001 * 109.46997 * 59.99978 * 6 4 3 32 32 H 1.09000 * 109.47140 * 299.99954 * 7 6 4 33 33 H 1.09002 * 109.47045 * 180.02562 * 7 6 4 34 34 H 1.08993 * 109.47839 * 180.02562 * 8 7 6 35 35 H 1.09000 * 109.47160 * 59.99666 * 8 7 6 36 36 H 1.09001 * 109.46998 * 179.97438 * 9 8 7 37 37 H 1.09000 * 109.47050 * 299.99699 * 9 8 7 38 38 H 0.97008 * 119.99554 * 95.00236 * 12 10 9 39 39 H 1.09007 * 109.47162 * 300.00292 * 15 13 12 40 40 H 1.09002 * 109.46946 * 59.99986 * 15 13 12 41 41 H 0.96995 * 120.00407 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4601 0.0006 5 1 3.8635 0.6016 -0.5130 6 6 3.9386 1.5006 1.4432 7 6 5.4638 1.6220 1.4438 8 6 5.8734 2.9078 0.7228 9 6 5.3655 2.8673 -0.7199 10 6 3.8404 2.7459 -0.7205 11 1 3.4073 3.6042 -0.2068 12 7 3.3541 2.7078 -2.1019 13 6 3.1337 3.8569 -2.7708 14 8 3.3384 4.9226 -2.2292 15 6 2.6340 3.8176 -4.1919 16 16 2.4391 5.5076 -4.8099 17 6 1.8612 5.1725 -6.4404 18 1 1.7326 4.1516 -6.7685 19 6 1.5711 6.2204 -7.3030 20 7 1.1399 5.9701 -8.5212 21 14 1.7928 7.9862 -6.7352 22 1 3.1724 8.4375 -7.0489 23 1 0.8156 8.8578 -7.4356 24 1 1.5668 8.0670 -5.2697 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3635 0.5139 -0.8900 28 1 1.8933 -0.5138 -0.8901 29 1 1.8934 -0.5139 0.8899 30 1 3.5059 2.3591 1.9568 31 1 3.6465 0.5847 1.9571 32 1 5.8968 0.7637 0.9301 33 1 5.8256 1.6504 2.4716 34 1 6.9599 2.9941 0.7228 35 1 5.4404 3.7661 1.2365 36 1 5.6569 3.7835 -1.2335 37 1 5.7985 2.0090 -1.2336 38 1 3.1906 1.8553 -2.5351 39 1 3.3518 3.2838 -4.8149 40 1 1.6725 3.3051 -4.2249 41 1 0.9376 6.7024 -9.1241 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000456967730.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:29:03 Heat of formation + Delta-G solvation = -132.695587 kcal Electronic energy + Delta-G solvation = -20909.402459 eV Core-core repulsion = 17720.559294 eV Total energy + Delta-G solvation = -3188.843165 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 287.134 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.23645 -39.69939 -37.58850 -35.23241 -34.67981 -32.41852 -31.76321 -30.48049 -29.03440 -27.84284 -24.14217 -23.48541 -23.15558 -21.62930 -20.98767 -19.86594 -18.17029 -17.77534 -17.44939 -17.09101 -16.51433 -16.46494 -15.94658 -15.65610 -15.14394 -14.94264 -14.71116 -14.56852 -14.40544 -14.11613 -13.87883 -13.53210 -13.35435 -13.13257 -13.02073 -12.71292 -12.64681 -12.42897 -12.24685 -11.92717 -11.88527 -11.71776 -11.60345 -11.30607 -11.17777 -11.01336 -10.54885 -10.42121 -10.06680 -9.00542 -8.52387 -6.23249 0.97857 1.30589 1.46231 1.54905 1.57445 2.20272 2.25655 2.62202 2.71160 2.85895 3.59881 3.79112 3.93883 3.97324 4.11223 4.15576 4.17310 4.21761 4.26018 4.36872 4.42184 4.45019 4.46697 4.52394 4.76702 4.82656 4.91122 5.00277 5.05287 5.11797 5.13704 5.23239 5.28268 5.31769 5.42932 5.51667 5.70021 6.10340 6.32540 6.45953 6.92863 7.19998 8.60202 Molecular weight = 287.13amu Principal moments of inertia in cm(-1) A = 0.021650 B = 0.003773 C = 0.003363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1292.977544 B = 7419.785396 C = 8322.950057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.052 3.948 3 O -0.403 6.403 4 C 0.090 3.910 5 H 0.087 0.913 6 C -0.134 4.134 7 C -0.111 4.111 8 C -0.117 4.117 9 C -0.124 4.124 10 C 0.150 3.850 11 H 0.061 0.939 12 N -0.704 5.704 13 C 0.537 3.463 14 O -0.563 6.563 15 C -0.110 4.110 16 S -0.175 6.175 17 C -0.530 4.530 18 H 0.062 0.938 19 C 0.047 3.953 20 N -0.917 5.917 21 Si 0.914 3.086 22 H -0.261 1.261 23 H -0.258 1.258 24 H -0.239 1.239 25 H 0.090 0.910 26 H 0.055 0.945 27 H 0.048 0.952 28 H 0.059 0.941 29 H 0.064 0.936 30 H 0.059 0.941 31 H 0.084 0.916 32 H 0.079 0.921 33 H 0.082 0.918 34 H 0.080 0.920 35 H 0.054 0.946 36 H 0.047 0.953 37 H 0.084 0.916 38 H 0.413 0.587 39 H 0.114 0.886 40 H 0.109 0.891 41 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.202 -16.328 21.816 28.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.024 4.024 3 O -0.323 6.323 4 C 0.032 3.968 5 H 0.105 0.895 6 C -0.173 4.173 7 C -0.149 4.149 8 C -0.156 4.156 9 C -0.162 4.162 10 C 0.046 3.954 11 H 0.079 0.921 12 N -0.356 5.356 13 C 0.322 3.678 14 O -0.441 6.441 15 C -0.261 4.261 16 S 0.052 5.948 17 C -0.677 4.677 18 H 0.080 0.920 19 C -0.158 4.158 20 N -0.555 5.555 21 Si 0.736 3.264 22 H -0.185 1.185 23 H -0.182 1.182 24 H -0.163 1.163 25 H 0.109 0.891 26 H 0.074 0.926 27 H 0.067 0.933 28 H 0.078 0.922 29 H 0.082 0.918 30 H 0.078 0.922 31 H 0.103 0.897 32 H 0.098 0.902 33 H 0.100 0.900 34 H 0.099 0.901 35 H 0.073 0.927 36 H 0.066 0.934 37 H 0.102 0.898 38 H 0.249 0.751 39 H 0.132 0.868 40 H 0.128 0.872 41 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 7.340 -14.370 22.541 27.722 hybrid contribution -0.501 -0.838 -1.392 1.701 sum 6.838 -15.208 21.149 26.932 Atomic orbital electron populations 1.21774 0.93875 1.03158 1.02217 1.22691 0.95676 0.82878 1.01196 1.88001 1.21057 1.28071 1.95200 1.22378 0.81349 0.96506 0.96590 0.89475 1.21991 0.96853 1.03237 0.95170 1.21512 0.93970 0.97674 1.01713 1.21537 1.01578 0.98680 0.93760 1.21884 0.93121 1.02464 0.98771 1.21129 0.94707 0.98582 0.81029 0.92061 1.45689 1.67504 1.08067 1.14325 1.19935 0.76498 0.84228 0.87090 1.90677 1.52619 1.31147 1.69690 1.23257 1.05863 1.00972 0.95995 1.84706 1.87195 1.08952 1.13956 1.22465 1.50937 0.96609 0.97731 0.91996 1.25544 0.92991 1.03225 0.94067 1.70008 1.44057 1.34565 1.06868 0.85878 0.79621 0.79725 0.81216 1.18550 1.18199 1.16252 0.89094 0.92593 0.93278 0.92232 0.91818 0.92243 0.89714 0.90226 0.89962 0.90098 0.92713 0.93417 0.89772 0.75112 0.86794 0.87237 0.91319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.27 10.28 71.98 0.74 -1.53 16 2 C 0.05 0.74 6.47 71.98 0.47 1.21 16 3 O -0.40 -8.43 9.85 -148.98 -1.47 -9.90 16 4 C 0.09 1.52 2.13 30.59 0.07 1.59 16 5 H 0.09 1.08 7.79 -2.39 -0.02 1.06 16 6 C -0.13 -1.83 5.54 30.59 0.17 -1.66 16 7 C -0.11 -1.21 5.92 30.59 0.18 -1.02 16 8 C -0.12 -1.80 5.92 30.60 0.18 -1.62 16 9 C -0.12 -2.49 5.49 30.60 0.17 -2.32 16 10 C 0.15 3.52 2.14 44.99 0.10 3.62 16 11 H 0.06 1.88 7.58 -2.39 -0.02 1.86 16 12 N -0.70 -18.41 4.94 -442.55 -2.19 -20.60 16 13 C 0.54 19.62 7.81 87.66 0.68 20.30 16 14 O -0.56 -25.28 15.52 -3.04 -0.05 -25.33 16 15 C -0.11 -4.33 6.16 71.23 0.44 -3.89 16 16 S -0.17 -9.08 18.55 -56.49 -1.05 -10.12 16 17 C -0.53 -31.42 10.04 67.95 0.68 -30.74 16 18 H 0.06 3.86 8.03 -2.91 -0.02 3.84 16 19 C 0.05 2.81 5.50 84.86 0.47 3.27 16 20 N -0.92 -56.43 13.97 21.65 0.30 -56.13 16 21 Si 0.91 45.70 27.74 68.60 1.90 47.60 16 22 H -0.26 -12.68 7.11 99.48 0.71 -11.97 16 23 H -0.26 -12.05 7.11 99.48 0.71 -11.34 16 24 H -0.24 -12.00 6.74 99.48 0.67 -11.33 16 25 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 26 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 27 H 0.05 0.88 8.14 -2.38 -0.02 0.86 16 28 H 0.06 0.71 8.09 -2.38 -0.02 0.69 16 29 H 0.06 0.69 7.87 -2.39 -0.02 0.67 16 30 H 0.06 1.00 8.14 -2.39 -0.02 0.99 16 31 H 0.08 0.89 7.87 -2.39 -0.02 0.87 16 32 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 33 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 34 H 0.08 1.04 8.14 -2.39 -0.02 1.03 16 35 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 36 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 37 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 38 H 0.41 8.26 8.60 -92.70 -0.80 7.46 16 39 H 0.11 4.07 8.14 -2.39 -0.02 4.05 16 40 H 0.11 4.04 8.14 -2.39 -0.02 4.02 16 41 H 0.28 15.75 8.31 -92.71 -0.77 14.98 16 Total: -1.00 -74.86 346.77 1.96 -72.89 By element: Atomic # 1 Polarization: 14.21 SS G_CDS: 0.17 Total: 14.37 kcal Atomic # 6 Polarization: -17.12 SS G_CDS: 4.34 Total: -12.79 kcal Atomic # 7 Polarization: -74.84 SS G_CDS: -1.88 Total: -76.73 kcal Atomic # 8 Polarization: -33.72 SS G_CDS: -1.51 Total: -35.23 kcal Atomic # 14 Polarization: 45.70 SS G_CDS: 1.90 Total: 47.60 kcal Atomic # 16 Polarization: -9.08 SS G_CDS: -1.05 Total: -10.12 kcal Total: -74.86 1.96 -72.89 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000456967730.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.801 kcal (2) G-P(sol) polarization free energy of solvation -74.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.895 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds