Wall clock time and date at job start Tue Mar 31 2020 06:28:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42900 * 109.47153 * 2 1 4 4 C 1.42899 * 113.99969 * 179.97438 * 3 2 1 5 5 C 1.53003 * 109.46998 * 180.02562 * 4 3 2 6 6 H 1.08994 * 109.58673 * 308.66574 * 5 4 3 7 7 C 1.53196 * 109.58594 * 188.38553 * 5 4 3 8 8 C 1.53040 * 109.31260 * 185.57447 * 7 5 4 9 9 C 1.53042 * 109.53646 * 61.36842 * 8 7 5 10 10 C 1.53196 * 109.31139 * 298.63630 * 9 8 7 11 11 N 1.46921 * 109.58610 * 69.09998 * 5 4 3 12 12 C 1.34778 * 120.63235 * 353.38948 * 11 5 4 13 13 O 1.21280 * 119.99882 * 6.04172 * 12 11 5 14 14 C 1.50703 * 120.00115 * 186.03799 * 12 11 5 15 15 S 1.80997 * 109.46990 * 180.02562 * 14 12 11 16 16 C 1.76208 * 99.99783 * 180.02562 * 15 14 12 17 17 H 1.07995 * 120.00024 * 359.97438 * 16 15 14 18 18 C 1.38796 * 119.99870 * 180.02562 * 16 15 14 19 19 N 1.31631 * 120.00040 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 119.99928 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.47327 * 59.99574 * 20 18 16 22 22 H 1.48501 * 109.47107 * 179.97438 * 20 18 16 23 23 H 1.48500 * 109.46964 * 299.99470 * 20 18 16 24 24 H 1.09008 * 109.46669 * 59.99861 * 1 2 3 25 25 H 1.08998 * 109.47234 * 179.97438 * 1 2 3 26 26 H 1.08995 * 109.47115 * 299.99738 * 1 2 3 27 27 H 1.09005 * 109.47051 * 240.00293 * 2 1 3 28 28 H 1.09003 * 109.47335 * 120.00339 * 2 1 3 29 29 H 1.09003 * 109.47627 * 300.00481 * 4 3 2 30 30 H 1.08994 * 109.46945 * 60.00497 * 4 3 2 31 31 H 1.09003 * 109.49912 * 305.53029 * 7 5 4 32 32 H 1.09004 * 109.49290 * 65.62533 * 7 5 4 33 33 H 1.08999 * 109.45630 * 181.38317 * 8 7 5 34 34 H 1.08995 * 109.45909 * 301.34885 * 8 7 5 35 35 H 1.09003 * 109.49625 * 58.57994 * 9 8 7 36 36 H 1.08994 * 109.50250 * 178.64782 * 9 8 7 37 37 H 1.08999 * 109.58660 * 174.42041 * 10 9 8 38 38 H 1.09000 * 109.58208 * 294.84556 * 10 9 8 39 39 H 1.09004 * 109.46743 * 300.00541 * 14 12 11 40 40 H 1.08993 * 109.46779 * 60.00148 * 14 12 11 41 41 H 0.96999 * 120.00075 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4601 0.0006 5 6 3.8254 2.9384 0.0012 6 1 3.3000 3.4571 -0.8007 7 6 5.3375 3.0665 -0.2087 8 6 5.7453 4.5348 -0.0686 9 6 5.4100 5.0268 1.3413 10 6 3.8988 4.9209 1.5688 11 7 3.4748 3.5412 1.2943 12 6 2.7773 2.8419 2.2114 13 8 2.5277 1.6706 2.0197 14 6 2.3077 3.5153 3.4752 15 16 1.4077 2.3220 4.4960 16 6 0.9865 3.3474 5.8657 17 1 1.2906 4.3836 5.8782 18 6 0.2648 2.8231 6.9290 19 7 -0.1054 1.5600 6.9141 20 14 -0.1824 3.9103 8.3807 21 1 -1.0126 5.0480 7.9099 22 1 -0.9486 3.1174 9.3755 23 1 1.0579 4.4299 9.0106 24 1 -0.3633 0.5139 -0.8901 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5139 0.8900 29 1 3.8334 0.9766 0.8908 30 1 3.8340 0.9765 -0.8892 31 1 5.8604 2.4706 0.5394 32 1 5.5979 2.7101 -1.2054 33 1 6.8171 4.6321 -0.2417 34 1 5.2035 5.1336 -0.8006 35 1 5.9322 4.4125 2.0748 36 1 5.7226 6.0655 1.4481 37 1 3.6661 5.1759 2.6027 38 1 3.3793 5.6035 0.8961 39 1 3.1688 3.8901 4.0287 40 1 1.6495 4.3460 3.2211 41 1 -0.6101 1.1937 7.6570 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000458084893.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:28:57 Heat of formation + Delta-G solvation = -75.691947 kcal Electronic energy + Delta-G solvation = -21711.018060 eV Core-core repulsion = 18524.646759 eV Total energy + Delta-G solvation = -3186.371301 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 287.134 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.23327 -37.14776 -36.97689 -32.90051 -32.48200 -32.37804 -30.37076 -28.88369 -26.35389 -25.41605 -24.29929 -22.34231 -22.02857 -20.89917 -18.94992 -17.52458 -16.63816 -16.25958 -15.98836 -15.08566 -15.05653 -14.77222 -14.66366 -14.11564 -13.99039 -13.82368 -13.28533 -13.00479 -12.81007 -12.70110 -12.44487 -12.16343 -11.89920 -11.79873 -11.29560 -11.08944 -11.02158 -11.00270 -10.88251 -10.76816 -10.74019 -10.72519 -10.48611 -9.76187 -9.06198 -9.01262 -8.61212 -8.21283 -8.16396 -6.43574 -6.18043 -3.87136 3.02714 3.24960 3.26483 3.28670 3.31440 3.67826 4.03911 4.24630 4.61200 4.70623 4.82385 5.04101 5.14249 5.16991 5.22344 5.28020 5.37187 5.44836 5.55625 5.58359 5.65293 5.68166 5.72127 5.75646 5.82667 5.84688 5.88796 5.92314 5.98678 6.09892 6.13755 6.21425 6.28392 6.40488 6.57902 6.84660 7.62598 7.73342 7.78531 8.38566 8.80627 9.27323 10.89284 Molecular weight = 287.13amu Principal moments of inertia in cm(-1) A = 0.016463 B = 0.005163 C = 0.004069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1700.424711 B = 5422.205847 C = 6879.128603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.074 3.926 3 O -0.367 6.367 4 C 0.075 3.925 5 C 0.153 3.847 6 H 0.072 0.928 7 C -0.128 4.128 8 C -0.116 4.116 9 C -0.136 4.136 10 C 0.110 3.890 11 N -0.617 5.617 12 C 0.532 3.468 13 O -0.487 6.487 14 C -0.149 4.149 15 S -0.059 6.059 16 C -0.535 4.535 17 H 0.070 0.930 18 C 0.074 3.926 19 N -0.869 5.869 20 Si 0.917 3.083 21 H -0.274 1.274 22 H -0.283 1.283 23 H -0.274 1.274 24 H 0.051 0.949 25 H 0.062 0.938 26 H 0.070 0.930 27 H 0.028 0.972 28 H 0.052 0.948 29 H 0.074 0.926 30 H 0.029 0.971 31 H 0.069 0.931 32 H 0.072 0.928 33 H 0.064 0.936 34 H 0.063 0.937 35 H 0.068 0.932 36 H 0.073 0.927 37 H 0.088 0.912 38 H 0.064 0.936 39 H 0.083 0.917 40 H 0.085 0.915 41 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.318 4.461 -15.354 19.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.003 4.003 3 O -0.286 6.286 4 C -0.002 4.002 5 C 0.049 3.951 6 H 0.090 0.910 7 C -0.167 4.167 8 C -0.154 4.154 9 C -0.175 4.175 10 C -0.014 4.014 11 N -0.355 5.355 12 C 0.320 3.680 13 O -0.359 6.359 14 C -0.299 4.299 15 S 0.168 5.832 16 C -0.683 4.683 17 H 0.088 0.912 18 C -0.135 4.135 19 N -0.504 5.504 20 Si 0.743 3.257 21 H -0.200 1.200 22 H -0.208 1.208 23 H -0.200 1.200 24 H 0.070 0.930 25 H 0.081 0.919 26 H 0.089 0.911 27 H 0.046 0.954 28 H 0.070 0.930 29 H 0.092 0.908 30 H 0.047 0.953 31 H 0.088 0.912 32 H 0.091 0.909 33 H 0.083 0.917 34 H 0.082 0.918 35 H 0.087 0.913 36 H 0.092 0.908 37 H 0.107 0.893 38 H 0.082 0.918 39 H 0.102 0.898 40 H 0.103 0.897 41 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 9.704 2.709 -15.530 18.512 hybrid contribution 0.194 1.991 1.153 2.309 sum 9.897 4.700 -14.377 18.076 Atomic orbital electron populations 1.21685 0.94405 1.01505 1.02897 1.22168 0.95031 0.84272 0.98811 1.87876 1.19852 1.25956 1.94927 1.22429 0.83659 0.94589 0.99531 1.21101 0.94294 0.93765 0.85919 0.90990 1.21895 0.95073 0.97430 1.02275 1.21475 1.01052 0.95735 0.97104 1.21941 0.96337 1.01689 0.97516 1.21672 0.94308 0.83009 1.02396 1.47995 1.57057 1.14358 1.16087 1.20143 0.77091 0.86943 0.83837 1.90668 1.54039 1.15520 1.75720 1.23569 1.03819 1.05014 0.97544 1.85296 1.67893 1.13126 1.16886 1.22838 1.41237 0.98693 1.05534 0.91153 1.24964 0.95072 0.95379 0.98073 1.70008 1.36048 1.12545 1.31795 0.86257 0.78610 0.79929 0.80903 1.19968 1.20838 1.19986 0.92956 0.91874 0.91101 0.95431 0.92990 0.90767 0.95275 0.91207 0.90898 0.91688 0.91784 0.91333 0.90828 0.89337 0.91798 0.89826 0.89680 0.92220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.23 10.28 37.16 0.38 -1.85 16 2 C 0.07 1.19 6.19 37.16 0.23 1.42 16 3 O -0.37 -6.54 7.95 -60.45 -0.48 -7.02 16 4 C 0.07 1.12 4.51 37.16 0.17 1.29 16 5 C 0.15 2.00 3.17 -67.60 -0.21 1.79 16 6 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 7 C -0.13 -1.27 5.36 -26.61 -0.14 -1.41 16 8 C -0.12 -0.98 5.88 -26.69 -0.16 -1.13 16 9 C -0.14 -1.27 6.08 -26.61 -0.16 -1.43 16 10 C 0.11 1.27 6.32 -3.71 -0.02 1.25 16 11 N -0.62 -9.20 2.97 -165.22 -0.49 -9.69 16 12 C 0.53 10.26 7.43 -10.98 -0.08 10.18 16 13 O -0.49 -10.54 9.36 -19.66 -0.18 -10.73 16 14 C -0.15 -3.10 4.58 36.01 0.16 -2.94 16 15 S -0.06 -1.60 20.57 -107.50 -2.21 -3.81 16 16 C -0.53 -15.37 9.50 30.94 0.29 -15.07 16 17 H 0.07 1.92 7.80 -52.49 -0.41 1.51 16 18 C 0.07 2.13 5.49 -17.43 -0.10 2.04 16 19 N -0.87 -26.30 13.22 55.49 0.73 -25.57 16 20 Si 0.92 21.56 29.55 -169.99 -5.02 16.54 16 21 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 22 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 23 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 24 H 0.05 0.73 8.14 -51.92 -0.42 0.30 16 25 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 26 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 27 H 0.03 0.38 8.14 -51.93 -0.42 -0.05 16 28 H 0.05 0.92 7.83 -51.93 -0.41 0.51 16 29 H 0.07 1.28 6.33 -51.93 -0.33 0.95 16 30 H 0.03 0.37 8.13 -51.93 -0.42 -0.05 16 31 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 33 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 34 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 35 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.09 1.07 5.97 -51.93 -0.31 0.76 16 38 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 39 H 0.08 1.63 7.44 -51.91 -0.39 1.24 16 40 H 0.08 1.70 8.13 -51.92 -0.42 1.28 16 41 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 LS Contribution 337.38 15.07 5.08 5.08 Total: -1.00 -33.21 337.38 -9.10 -42.32 By element: Atomic # 1 Polarization: 5.65 SS G_CDS: -6.89 Total: -1.24 kcal Atomic # 6 Polarization: -6.24 SS G_CDS: 0.36 Total: -5.88 kcal Atomic # 7 Polarization: -35.51 SS G_CDS: 0.24 Total: -35.26 kcal Atomic # 8 Polarization: -17.08 SS G_CDS: -0.66 Total: -17.74 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Atomic # 16 Polarization: -1.60 SS G_CDS: -2.21 Total: -3.81 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -33.21 -9.10 -42.32 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458084893.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.375 kcal (2) G-P(sol) polarization free energy of solvation -33.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.317 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds