Wall clock time and date at job start Tue Mar 31 2020 06:28:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42900 * 109.47153 * 2 1 4 4 C 1.42899 * 113.99969 * 179.97438 * 3 2 1 5 5 C 1.53003 * 109.46998 * 180.02562 * 4 3 2 6 6 H 1.08994 * 109.58673 * 308.66574 * 5 4 3 7 7 C 1.53196 * 109.58594 * 188.38553 * 5 4 3 8 8 C 1.53040 * 109.31260 * 185.57447 * 7 5 4 9 9 C 1.53042 * 109.53646 * 61.36842 * 8 7 5 10 10 C 1.53196 * 109.31139 * 298.63630 * 9 8 7 11 11 N 1.46921 * 109.58610 * 69.09998 * 5 4 3 12 12 C 1.34778 * 120.63235 * 353.38948 * 11 5 4 13 13 O 1.21280 * 119.99882 * 6.04172 * 12 11 5 14 14 C 1.50703 * 120.00115 * 186.03799 * 12 11 5 15 15 S 1.80997 * 109.46990 * 180.02562 * 14 12 11 16 16 C 1.76208 * 99.99783 * 180.02562 * 15 14 12 17 17 H 1.07995 * 120.00024 * 359.97438 * 16 15 14 18 18 C 1.38796 * 119.99870 * 180.02562 * 16 15 14 19 19 N 1.31631 * 120.00040 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 119.99928 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.47327 * 59.99574 * 20 18 16 22 22 H 1.48501 * 109.47107 * 179.97438 * 20 18 16 23 23 H 1.48500 * 109.46964 * 299.99470 * 20 18 16 24 24 H 1.09008 * 109.46669 * 59.99861 * 1 2 3 25 25 H 1.08998 * 109.47234 * 179.97438 * 1 2 3 26 26 H 1.08995 * 109.47115 * 299.99738 * 1 2 3 27 27 H 1.09005 * 109.47051 * 240.00293 * 2 1 3 28 28 H 1.09003 * 109.47335 * 120.00339 * 2 1 3 29 29 H 1.09003 * 109.47627 * 300.00481 * 4 3 2 30 30 H 1.08994 * 109.46945 * 60.00497 * 4 3 2 31 31 H 1.09003 * 109.49912 * 305.53029 * 7 5 4 32 32 H 1.09004 * 109.49290 * 65.62533 * 7 5 4 33 33 H 1.08999 * 109.45630 * 181.38317 * 8 7 5 34 34 H 1.08995 * 109.45909 * 301.34885 * 8 7 5 35 35 H 1.09003 * 109.49625 * 58.57994 * 9 8 7 36 36 H 1.08994 * 109.50250 * 178.64782 * 9 8 7 37 37 H 1.08999 * 109.58660 * 174.42041 * 10 9 8 38 38 H 1.09000 * 109.58208 * 294.84556 * 10 9 8 39 39 H 1.09004 * 109.46743 * 300.00541 * 14 12 11 40 40 H 1.08993 * 109.46779 * 60.00148 * 14 12 11 41 41 H 0.96999 * 120.00075 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4601 0.0006 5 6 3.8254 2.9384 0.0012 6 1 3.3000 3.4571 -0.8007 7 6 5.3375 3.0665 -0.2087 8 6 5.7453 4.5348 -0.0686 9 6 5.4100 5.0268 1.3413 10 6 3.8988 4.9209 1.5688 11 7 3.4748 3.5412 1.2943 12 6 2.7773 2.8419 2.2114 13 8 2.5277 1.6706 2.0197 14 6 2.3077 3.5153 3.4752 15 16 1.4077 2.3220 4.4960 16 6 0.9865 3.3474 5.8657 17 1 1.2906 4.3836 5.8782 18 6 0.2648 2.8231 6.9290 19 7 -0.1054 1.5600 6.9141 20 14 -0.1824 3.9103 8.3807 21 1 -1.0126 5.0480 7.9099 22 1 -0.9486 3.1174 9.3755 23 1 1.0579 4.4299 9.0106 24 1 -0.3633 0.5139 -0.8901 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5139 0.8900 29 1 3.8334 0.9766 0.8908 30 1 3.8340 0.9765 -0.8892 31 1 5.8604 2.4706 0.5394 32 1 5.5979 2.7101 -1.2054 33 1 6.8171 4.6321 -0.2417 34 1 5.2035 5.1336 -0.8006 35 1 5.9322 4.4125 2.0748 36 1 5.7226 6.0655 1.4481 37 1 3.6661 5.1759 2.6027 38 1 3.3793 5.6035 0.8961 39 1 3.1688 3.8901 4.0287 40 1 1.6495 4.3460 3.2211 41 1 -0.6101 1.1937 7.6570 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000458084893.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:28:56 Heat of formation + Delta-G solvation = -95.787879 kcal Electronic energy + Delta-G solvation = -21711.889485 eV Core-core repulsion = 18524.646759 eV Total energy + Delta-G solvation = -3187.242726 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 287.134 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.47429 -38.37754 -38.21382 -34.58462 -34.05141 -33.49228 -31.55487 -30.40481 -27.73947 -27.33881 -25.28501 -23.60335 -23.12564 -21.85514 -20.37884 -19.37180 -17.98878 -17.49261 -17.22488 -16.87866 -16.45151 -16.36533 -15.82720 -15.59870 -15.04190 -15.01681 -14.56109 -14.39451 -14.17734 -13.96215 -13.78429 -13.36439 -13.28315 -13.14730 -12.87580 -12.84653 -12.61250 -12.30663 -12.17018 -11.88657 -11.78418 -11.71650 -11.55776 -11.45871 -11.12836 -10.36735 -10.23950 -10.02134 -9.42241 -8.63628 -8.34169 -6.11060 1.27431 1.42763 1.46220 1.56403 1.77926 2.17294 2.29214 2.90550 2.99530 3.29420 3.66854 3.89572 4.02641 4.03550 4.16775 4.20469 4.27207 4.29673 4.30183 4.41749 4.46698 4.50642 4.55978 4.59224 4.73165 4.82288 4.94155 4.97441 5.01429 5.07957 5.12651 5.18946 5.23614 5.28730 5.40793 5.47940 5.73939 6.19333 6.44764 6.53196 7.06827 7.37224 8.74706 Molecular weight = 287.13amu Principal moments of inertia in cm(-1) A = 0.016463 B = 0.005163 C = 0.004069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1700.424711 B = 5422.205847 C = 6879.128603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.072 3.928 3 O -0.391 6.391 4 C 0.072 3.928 5 C 0.150 3.850 6 H 0.083 0.917 7 C -0.122 4.122 8 C -0.112 4.112 9 C -0.131 4.131 10 C 0.100 3.900 11 N -0.609 5.609 12 C 0.525 3.475 13 O -0.518 6.518 14 C -0.123 4.123 15 S -0.141 6.141 16 C -0.549 4.549 17 H 0.078 0.922 18 C 0.016 3.984 19 N -0.911 5.911 20 Si 0.996 3.004 21 H -0.263 1.263 22 H -0.277 1.277 23 H -0.262 1.262 24 H 0.066 0.934 25 H 0.085 0.915 26 H 0.032 0.968 27 H 0.058 0.942 28 H 0.023 0.977 29 H 0.044 0.956 30 H 0.057 0.943 31 H 0.057 0.943 32 H 0.097 0.903 33 H 0.085 0.915 34 H 0.077 0.923 35 H 0.055 0.945 36 H 0.099 0.901 37 H 0.080 0.920 38 H 0.083 0.917 39 H 0.097 0.903 40 H 0.093 0.907 41 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.664 6.759 -16.668 21.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.004 4.004 3 O -0.311 6.311 4 C -0.004 4.004 5 C 0.047 3.953 6 H 0.101 0.899 7 C -0.160 4.160 8 C -0.149 4.149 9 C -0.170 4.170 10 C -0.022 4.022 11 N -0.345 5.345 12 C 0.312 3.688 13 O -0.394 6.394 14 C -0.274 4.274 15 S 0.086 5.914 16 C -0.697 4.697 17 H 0.096 0.904 18 C -0.189 4.189 19 N -0.547 5.547 20 Si 0.818 3.182 21 H -0.188 1.188 22 H -0.202 1.202 23 H -0.186 1.186 24 H 0.085 0.915 25 H 0.103 0.897 26 H 0.052 0.948 27 H 0.076 0.924 28 H 0.042 0.958 29 H 0.062 0.938 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.116 0.884 33 H 0.103 0.897 34 H 0.095 0.905 35 H 0.074 0.926 36 H 0.117 0.883 37 H 0.099 0.901 38 H 0.101 0.899 39 H 0.116 0.884 40 H 0.112 0.888 41 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 11.085 5.042 -16.877 20.812 hybrid contribution -0.160 1.285 1.442 1.938 sum 10.925 6.327 -15.434 19.940 Atomic orbital electron populations 1.21664 0.94009 1.02627 1.01646 1.22218 0.95440 0.83938 0.98823 1.87835 1.21500 1.26727 1.94988 1.22526 0.82385 0.96154 0.99341 1.21365 0.96752 0.92355 0.84817 0.89931 1.21892 0.92049 0.98774 1.03265 1.21491 1.02494 0.94397 0.96564 1.21926 0.93963 1.03093 0.97976 1.21979 0.96475 0.81230 1.02529 1.48008 1.55373 1.15364 1.15780 1.19927 0.77975 0.86771 0.84145 1.90683 1.55606 1.16751 1.76365 1.23387 1.03381 1.03054 0.97568 1.85442 1.69701 1.17286 1.18958 1.23175 1.41569 0.98994 1.05953 0.90372 1.26088 0.94615 0.96889 1.01327 1.70174 1.36875 1.14728 1.32949 0.85040 0.78760 0.77845 0.76577 1.18776 1.20239 1.18638 0.91497 0.89653 0.94829 0.92393 0.95818 0.93781 0.92487 0.92463 0.88448 0.89680 0.90456 0.92649 0.88309 0.90127 0.89869 0.88430 0.88848 0.92019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.40 10.28 71.98 0.74 -3.66 16 2 C 0.07 2.37 6.19 71.98 0.45 2.82 16 3 O -0.39 -14.10 7.95 -124.86 -0.99 -15.09 16 4 C 0.07 2.15 4.51 71.98 0.32 2.48 16 5 C 0.15 3.66 3.17 44.98 0.14 3.81 16 6 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 7 C -0.12 -2.05 5.36 30.67 0.16 -1.89 16 8 C -0.11 -1.44 5.88 30.62 0.18 -1.26 16 9 C -0.13 -2.04 6.08 30.67 0.19 -1.85 16 10 C 0.10 2.11 6.32 86.36 0.55 2.65 16 11 N -0.61 -17.59 2.97 -795.02 -2.36 -19.96 16 12 C 0.53 20.68 7.43 87.66 0.65 21.33 16 13 O -0.52 -23.56 9.36 21.08 0.20 -23.36 16 14 C -0.12 -5.22 4.58 71.24 0.33 -4.89 16 15 S -0.14 -8.04 20.57 -56.49 -1.16 -9.20 16 16 C -0.55 -32.15 9.50 67.95 0.65 -31.50 16 17 H 0.08 4.28 7.80 -2.91 -0.02 4.26 16 18 C 0.02 0.90 5.49 84.86 0.47 1.37 16 19 N -0.91 -56.69 13.22 21.65 0.29 -56.41 16 20 Si 1.00 44.28 29.55 68.60 2.03 46.31 16 21 H -0.26 -11.14 7.11 99.48 0.71 -10.43 16 22 H -0.28 -11.96 7.11 99.48 0.71 -11.25 16 23 H -0.26 -11.02 7.11 99.48 0.71 -10.31 16 24 H 0.07 1.83 8.14 -2.38 -0.02 1.81 16 25 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 26 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 27 H 0.06 1.52 8.14 -2.38 -0.02 1.50 16 28 H 0.02 0.89 7.83 -2.39 -0.02 0.87 16 29 H 0.04 1.58 6.33 -2.39 -0.02 1.56 16 30 H 0.06 1.35 8.13 -2.39 -0.02 1.33 16 31 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 32 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 33 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 34 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 35 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 36 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 37 H 0.08 1.82 5.97 -2.39 -0.01 1.80 16 38 H 0.08 1.47 8.14 -2.39 -0.02 1.46 16 39 H 0.10 3.82 7.44 -2.39 -0.02 3.80 16 40 H 0.09 3.77 8.13 -2.40 -0.02 3.75 16 41 H 0.27 15.67 8.31 -92.71 -0.77 14.89 16 Total: -1.00 -75.76 337.38 3.80 -71.96 By element: Atomic # 1 Polarization: 15.36 SS G_CDS: 0.99 Total: 16.35 kcal Atomic # 6 Polarization: -15.42 SS G_CDS: 4.82 Total: -10.60 kcal Atomic # 7 Polarization: -74.29 SS G_CDS: -2.08 Total: -76.37 kcal Atomic # 8 Polarization: -37.66 SS G_CDS: -0.80 Total: -38.45 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 2.03 Total: 46.31 kcal Atomic # 16 Polarization: -8.04 SS G_CDS: -1.16 Total: -9.20 kcal Total: -75.76 3.80 -71.96 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458084893.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.833 kcal (2) G-P(sol) polarization free energy of solvation -75.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.955 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds