Wall clock time and date at job start Tue Mar 31 2020 06:06:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17407 * 1 3 3 C 1.47194 * 179.97438 * 2 1 4 4 N 1.46503 * 109.47032 * 17.07273 * 3 2 1 5 5 C 1.37101 * 120.00120 * 85.83310 * 4 3 2 6 6 H 1.08001 * 119.99838 * 177.48723 * 5 4 3 7 7 C 1.38945 * 119.99700 * 357.47792 * 5 4 3 8 8 N 1.31415 * 120.00754 * 330.91079 * 7 5 4 9 9 Si 1.86802 * 119.99852 * 150.90933 * 7 5 4 10 10 H 1.48499 * 109.47043 * 90.00129 * 9 7 5 11 11 H 1.48496 * 109.47320 * 210.00057 * 9 7 5 12 12 H 1.48509 * 109.47103 * 330.00061 * 9 7 5 13 13 C 1.34776 * 119.99886 * 265.82597 * 4 3 2 14 14 O 1.21294 * 119.99892 * 4.26583 * 13 4 3 15 15 C 1.50698 * 120.00041 * 184.25722 * 13 4 3 16 16 H 1.09003 * 109.46742 * 53.10917 * 15 13 4 17 17 C 1.52992 * 109.47763 * 293.10707 * 15 13 4 18 18 C 1.50701 * 109.47387 * 173.09902 * 15 13 4 19 19 C 1.38288 * 119.96789 * 60.00564 * 18 15 13 20 20 C 1.38247 * 120.11386 * 179.97438 * 19 18 15 21 21 C 1.38170 * 120.05124 * 359.97438 * 20 19 18 22 22 C 1.38701 * 119.94432 * 0.02562 * 21 20 19 23 23 O 1.35901 * 120.05372 * 180.02562 * 22 21 20 24 24 C 1.42900 * 117.00021 * 359.97438 * 23 22 21 25 25 C 1.38123 * 119.97669 * 239.73196 * 18 15 13 26 26 H 4.40644 * 5.51385 * 180.02562 * 4 1 2 27 27 H 1.08998 * 109.47275 * 257.07153 * 3 2 1 28 28 H 1.09003 * 109.47513 * 137.07051 * 3 2 1 29 29 H 0.96992 * 120.00431 * 180.02562 * 8 7 5 30 30 H 1.09002 * 109.46868 * 298.19259 * 17 15 13 31 31 H 1.09000 * 109.47201 * 58.18688 * 17 15 13 32 32 H 1.09003 * 109.47638 * 178.19076 * 17 15 13 33 33 H 1.08003 * 119.94275 * 359.97438 * 19 18 15 34 34 H 1.07999 * 119.97554 * 180.02562 * 20 19 18 35 35 H 1.07995 * 120.02320 * 180.02562 * 21 20 19 36 36 H 1.09002 * 109.46537 * 60.00316 * 24 23 22 37 37 H 1.08998 * 109.46963 * 179.97438 * 24 23 22 38 38 H 1.09001 * 109.47190 * 300.00392 * 24 23 22 39 39 H 1.07993 * 120.02663 * 359.97438 * 25 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1349 -1.3195 -0.4055 5 6 3.2822 -1.6171 -1.7357 6 1 3.6809 -2.5756 -2.0337 7 6 2.9184 -0.6857 -2.7004 8 7 1.9608 0.1791 -2.4509 9 14 3.7905 -0.6625 -4.3522 10 1 3.0771 -1.5547 -5.3011 11 1 3.8004 0.7226 -4.8873 12 1 5.1872 -1.1371 -4.1812 13 6 3.4400 -2.2414 0.5291 14 8 3.2371 -2.0064 1.7016 15 6 4.0331 -3.5641 0.1173 16 1 4.9101 -3.3907 -0.5064 17 6 2.9958 -4.3645 -0.6726 18 6 4.4359 -4.3384 1.3459 19 6 3.4851 -4.6780 2.2909 20 6 3.8512 -5.3886 3.4188 21 6 5.1685 -5.7619 3.6042 22 6 6.1240 -5.4225 2.6578 23 8 7.4203 -5.7889 2.8376 24 6 7.7285 -6.5219 4.0249 25 6 5.7533 -4.7131 1.5243 26 1 -1.0498 -0.0003 -0.0003 27 1 3.0093 0.2307 1.0016 28 1 3.0091 0.7533 -0.6999 29 1 1.7066 0.8290 -3.1244 30 1 2.1323 -4.5656 -0.0385 31 1 2.6807 -3.7906 -1.5441 32 1 3.4351 -5.3075 -0.9980 33 1 2.4548 -4.3875 2.1476 34 1 3.1067 -5.6530 4.1552 35 1 5.4539 -6.3174 4.4852 36 1 7.1573 -7.4502 4.0373 37 1 8.7940 -6.7510 4.0441 38 1 7.4692 -5.9240 4.8987 39 1 6.4945 -4.4519 0.7837 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000490964045.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:03 Heat of formation + Delta-G solvation = 26.762493 kcal Electronic energy + Delta-G solvation = -22515.166193 eV Core-core repulsion = 19197.793699 eV Total energy + Delta-G solvation = -3317.372495 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 287.131 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.03376 -38.93547 -37.16933 -35.08682 -33.37711 -31.83379 -31.30413 -30.41979 -28.72613 -27.21143 -26.38176 -25.01008 -23.44324 -22.23064 -20.93742 -19.06592 -18.17581 -17.20567 -16.44111 -16.31649 -15.86769 -15.63133 -15.40603 -14.48445 -14.31647 -14.19684 -13.83439 -13.40656 -13.16126 -12.92788 -12.68416 -12.26056 -12.19477 -11.95194 -11.83757 -11.61469 -11.32591 -11.07924 -11.00375 -10.83024 -10.65140 -10.47882 -10.36308 -10.13733 -9.33132 -9.24827 -8.67501 -8.58617 -8.22611 -8.01956 -7.82881 -6.45739 -3.88323 1.67048 1.84375 3.06630 3.20072 3.23565 3.38967 3.72462 3.91629 4.11574 4.18569 4.30948 4.90063 4.93884 5.01320 5.10685 5.11636 5.20810 5.36887 5.43048 5.64126 5.73871 5.77969 5.83843 5.92155 6.00068 6.16028 6.32646 6.42767 6.54114 6.58210 6.71984 6.76969 6.89659 6.91653 7.07754 7.15830 7.19812 7.39107 7.58843 7.63623 8.27339 9.00037 9.02159 9.42998 9.83903 10.52780 Molecular weight = 287.13amu Principal moments of inertia in cm(-1) A = 0.021075 B = 0.004629 C = 0.004087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1328.270914 B = 6047.049726 C = 6848.682597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.278 4.278 2 C -0.093 4.093 3 C 0.237 3.763 4 N -0.436 5.436 5 C -0.354 4.354 6 H 0.113 0.887 7 C 0.043 3.957 8 N -0.839 5.839 9 Si 0.906 3.094 10 H -0.278 1.278 11 H -0.282 1.282 12 H -0.268 1.268 13 C 0.462 3.538 14 O -0.598 6.598 15 C -0.055 4.055 16 H 0.095 0.905 17 C -0.146 4.146 18 C -0.011 4.011 19 C -0.110 4.110 20 C -0.089 4.089 21 C -0.217 4.217 22 C 0.115 3.885 23 O -0.322 6.322 24 C 0.030 3.970 25 C -0.147 4.147 26 H 0.196 0.804 27 H 0.069 0.931 28 H 0.105 0.895 29 H 0.270 0.730 30 H 0.052 0.948 31 H 0.092 0.908 32 H 0.051 0.949 33 H 0.123 0.877 34 H 0.119 0.881 35 H 0.120 0.880 36 H 0.052 0.948 37 H 0.095 0.905 38 H 0.052 0.948 39 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.688 -9.192 5.938 12.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.297 4.297 2 C -0.095 4.095 3 C 0.115 3.885 4 N -0.153 5.153 5 C -0.480 4.480 6 H 0.130 0.870 7 C -0.164 4.164 8 N -0.475 5.475 9 Si 0.731 3.269 10 H -0.204 1.204 11 H -0.207 1.207 12 H -0.192 1.192 13 C 0.251 3.749 14 O -0.484 6.484 15 C -0.077 4.077 16 H 0.113 0.887 17 C -0.204 4.204 18 C -0.011 4.011 19 C -0.128 4.128 20 C -0.108 4.108 21 C -0.235 4.235 22 C 0.070 3.930 23 O -0.236 6.236 24 C -0.065 4.065 25 C -0.166 4.166 26 H 0.213 0.787 27 H 0.087 0.913 28 H 0.122 0.878 29 H 0.081 0.919 30 H 0.071 0.929 31 H 0.111 0.889 32 H 0.070 0.930 33 H 0.140 0.860 34 H 0.137 0.863 35 H 0.138 0.862 36 H 0.070 0.930 37 H 0.113 0.887 38 H 0.071 0.929 39 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 5.670 -8.843 6.267 12.232 hybrid contribution -0.061 0.025 -0.805 0.808 sum 5.609 -8.818 5.462 11.792 Atomic orbital electron populations 1.24147 0.95280 1.02671 1.07572 1.23093 0.94258 0.97867 0.94261 1.18224 0.84297 0.86943 0.99036 1.43733 1.55014 1.10543 1.06006 1.19742 1.44148 1.03858 0.80301 0.86982 1.25195 0.94968 0.96521 0.99738 1.70232 1.22074 1.19547 1.35639 0.86286 0.80625 0.77857 0.82104 1.20374 1.20726 1.19222 1.19755 0.84103 0.85448 0.85584 1.90563 1.60068 1.79627 1.18103 1.20014 1.00244 0.93349 0.94049 0.88717 1.21943 0.97704 0.99224 1.01495 1.19386 0.91936 0.94367 0.95455 1.20890 1.00121 0.97973 0.93853 1.20851 0.95104 0.97474 0.97330 1.21063 0.94161 1.07747 1.00555 1.18870 0.82690 0.96408 0.95003 1.86039 1.24373 1.70715 1.42427 1.22965 1.01777 0.95234 0.86535 1.20265 0.96154 1.02748 0.97429 0.78668 0.91267 0.87764 0.91905 0.92933 0.88908 0.92970 0.85950 0.86321 0.86229 0.92984 0.88700 0.92908 0.85524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.28 -6.32 19.25 29.55 0.57 -5.75 16 2 C -0.09 -2.30 11.42 -37.12 -0.42 -2.72 16 3 C 0.24 5.75 5.23 -6.83 -0.04 5.72 16 4 N -0.44 -10.63 2.59 -117.94 -0.31 -10.94 16 5 C -0.35 -8.48 8.06 -14.93 -0.12 -8.60 16 6 H 0.11 2.50 4.90 -52.49 -0.26 2.24 16 7 C 0.04 1.02 4.88 -17.47 -0.09 0.94 16 8 N -0.84 -21.00 9.13 55.50 0.51 -20.49 16 9 Si 0.91 18.54 29.64 -169.99 -5.04 13.50 16 10 H -0.28 -5.71 7.11 56.52 0.40 -5.31 16 11 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 12 H -0.27 -5.41 7.11 56.52 0.40 -5.01 16 13 C 0.46 10.90 6.89 -10.99 -0.08 10.83 16 14 O -0.60 -15.44 14.42 5.54 0.08 -15.36 16 15 C -0.06 -1.08 2.07 -92.93 -0.19 -1.28 16 16 H 0.09 1.77 7.42 -51.93 -0.39 1.39 16 17 C -0.15 -2.63 8.61 37.15 0.32 -2.31 16 18 C -0.01 -0.20 4.46 -104.65 -0.47 -0.67 16 19 C -0.11 -1.99 7.84 -39.56 -0.31 -2.30 16 20 C -0.09 -1.38 10.04 -39.60 -0.40 -1.78 16 21 C -0.22 -3.15 9.04 -39.44 -0.36 -3.51 16 22 C 0.11 1.82 6.69 -39.22 -0.26 1.56 16 23 O -0.32 -4.60 10.50 -19.43 -0.20 -4.80 16 24 C 0.03 0.29 9.81 101.05 0.99 1.28 16 25 C -0.15 -2.54 9.61 -39.43 -0.38 -2.92 16 26 H 0.20 3.65 7.80 -54.10 -0.42 3.23 16 27 H 0.07 1.64 7.36 -51.93 -0.38 1.25 16 28 H 0.10 2.54 6.32 -51.93 -0.33 2.22 16 29 H 0.27 6.48 8.31 -40.82 -0.34 6.14 16 30 H 0.05 0.95 7.32 -51.93 -0.38 0.57 16 31 H 0.09 1.80 5.25 -51.93 -0.27 1.53 16 32 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 33 H 0.12 2.32 7.33 -52.48 -0.38 1.94 16 34 H 0.12 1.52 8.06 -52.49 -0.42 1.10 16 35 H 0.12 1.38 6.30 -52.49 -0.33 1.05 16 36 H 0.05 0.44 7.66 -51.93 -0.40 0.04 16 37 H 0.09 0.68 8.14 -51.93 -0.42 0.25 16 38 H 0.05 0.47 7.66 -51.93 -0.40 0.07 16 39 H 0.13 2.03 7.94 -52.49 -0.42 1.61 16 LS Contribution 327.43 15.07 4.93 4.93 Total: -1.00 -29.41 327.43 -6.01 -35.42 By element: Atomic # 1 Polarization: 14.00 SS G_CDS: -4.76 Total: 9.24 kcal Atomic # 6 Polarization: -10.28 SS G_CDS: -1.23 Total: -11.50 kcal Atomic # 7 Polarization: -31.63 SS G_CDS: 0.20 Total: -31.43 kcal Atomic # 8 Polarization: -20.04 SS G_CDS: -0.12 Total: -20.16 kcal Atomic # 14 Polarization: 18.54 SS G_CDS: -5.04 Total: 13.50 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -29.41 -6.01 -35.42 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490964045.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.185 kcal (2) G-P(sol) polarization free energy of solvation -29.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.423 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds