Wall clock time and date at job start Tue Mar 31 2020 06:06:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17407 * 1 3 3 C 1.47194 * 179.97438 * 2 1 4 4 N 1.46503 * 109.47032 * 17.07273 * 3 2 1 5 5 C 1.37101 * 120.00120 * 85.83310 * 4 3 2 6 6 H 1.08001 * 119.99838 * 177.48723 * 5 4 3 7 7 C 1.38945 * 119.99700 * 357.47792 * 5 4 3 8 8 N 1.31415 * 120.00754 * 330.91079 * 7 5 4 9 9 Si 1.86802 * 119.99852 * 150.90933 * 7 5 4 10 10 H 1.48499 * 109.47043 * 90.00129 * 9 7 5 11 11 H 1.48496 * 109.47320 * 210.00057 * 9 7 5 12 12 H 1.48509 * 109.47103 * 330.00061 * 9 7 5 13 13 C 1.34776 * 119.99886 * 265.82597 * 4 3 2 14 14 O 1.21294 * 119.99892 * 4.26583 * 13 4 3 15 15 C 1.50698 * 120.00041 * 184.25722 * 13 4 3 16 16 H 1.09003 * 109.46742 * 53.10917 * 15 13 4 17 17 C 1.52992 * 109.47763 * 293.10707 * 15 13 4 18 18 C 1.50701 * 109.47387 * 173.09902 * 15 13 4 19 19 C 1.38288 * 119.96789 * 60.00564 * 18 15 13 20 20 C 1.38247 * 120.11386 * 179.97438 * 19 18 15 21 21 C 1.38170 * 120.05124 * 359.97438 * 20 19 18 22 22 C 1.38701 * 119.94432 * 0.02562 * 21 20 19 23 23 O 1.35901 * 120.05372 * 180.02562 * 22 21 20 24 24 C 1.42900 * 117.00021 * 359.97438 * 23 22 21 25 25 C 1.38123 * 119.97669 * 239.73196 * 18 15 13 26 26 H 4.40644 * 5.51385 * 180.02562 * 4 1 2 27 27 H 1.08998 * 109.47275 * 257.07153 * 3 2 1 28 28 H 1.09003 * 109.47513 * 137.07051 * 3 2 1 29 29 H 0.96992 * 120.00431 * 180.02562 * 8 7 5 30 30 H 1.09002 * 109.46868 * 298.19259 * 17 15 13 31 31 H 1.09000 * 109.47201 * 58.18688 * 17 15 13 32 32 H 1.09003 * 109.47638 * 178.19076 * 17 15 13 33 33 H 1.08003 * 119.94275 * 359.97438 * 19 18 15 34 34 H 1.07999 * 119.97554 * 180.02562 * 20 19 18 35 35 H 1.07995 * 120.02320 * 180.02562 * 21 20 19 36 36 H 1.09002 * 109.46537 * 60.00316 * 24 23 22 37 37 H 1.08998 * 109.46963 * 179.97438 * 24 23 22 38 38 H 1.09001 * 109.47190 * 300.00392 * 24 23 22 39 39 H 1.07993 * 120.02663 * 359.97438 * 25 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1349 -1.3195 -0.4055 5 6 3.2822 -1.6171 -1.7357 6 1 3.6809 -2.5756 -2.0337 7 6 2.9184 -0.6857 -2.7004 8 7 1.9608 0.1791 -2.4509 9 14 3.7905 -0.6625 -4.3522 10 1 3.0771 -1.5547 -5.3011 11 1 3.8004 0.7226 -4.8873 12 1 5.1872 -1.1371 -4.1812 13 6 3.4400 -2.2414 0.5291 14 8 3.2371 -2.0064 1.7016 15 6 4.0331 -3.5641 0.1173 16 1 4.9101 -3.3907 -0.5064 17 6 2.9958 -4.3645 -0.6726 18 6 4.4359 -4.3384 1.3459 19 6 3.4851 -4.6780 2.2909 20 6 3.8512 -5.3886 3.4188 21 6 5.1685 -5.7619 3.6042 22 6 6.1240 -5.4225 2.6578 23 8 7.4203 -5.7889 2.8376 24 6 7.7285 -6.5219 4.0249 25 6 5.7533 -4.7131 1.5243 26 1 -1.0498 -0.0003 -0.0003 27 1 3.0093 0.2307 1.0016 28 1 3.0091 0.7533 -0.6999 29 1 1.7066 0.8290 -3.1244 30 1 2.1323 -4.5656 -0.0385 31 1 2.6807 -3.7906 -1.5441 32 1 3.4351 -5.3075 -0.9980 33 1 2.4548 -4.3875 2.1476 34 1 3.1067 -5.6530 4.1552 35 1 5.4539 -6.3174 4.4852 36 1 7.1573 -7.4502 4.0373 37 1 8.7940 -6.7510 4.0441 38 1 7.4692 -5.9240 4.8987 39 1 6.4945 -4.4519 0.7837 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000490964045.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:03 Heat of formation + Delta-G solvation = 11.249161 kcal Electronic energy + Delta-G solvation = -22515.838902 eV Core-core repulsion = 19197.793699 eV Total energy + Delta-G solvation = -3318.045203 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 287.131 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.36495 -40.48125 -38.46599 -36.91597 -34.89406 -33.67972 -33.09267 -31.63195 -30.07035 -28.21760 -28.06319 -26.80815 -24.93752 -23.46573 -22.34176 -20.76370 -19.81261 -18.67200 -18.04769 -17.96603 -17.05761 -16.77394 -16.57141 -16.24012 -16.00168 -15.88451 -15.31199 -14.82206 -14.54624 -14.30790 -14.22656 -13.85064 -13.65473 -13.47788 -13.25685 -12.91052 -12.84527 -12.69346 -12.32936 -12.19076 -12.09356 -11.94377 -11.81037 -11.58358 -11.17975 -11.10222 -10.55328 -10.21875 -9.90709 -9.69684 -9.05006 -8.28218 -5.76355 0.41117 0.58225 1.42025 1.53035 1.63139 1.91285 2.14354 2.36367 2.40967 2.44187 2.83567 3.09480 3.28903 3.78831 3.91790 3.96707 4.16769 4.24224 4.34825 4.38276 4.44499 4.47333 4.50319 4.62681 4.71153 4.76430 4.85047 4.97899 5.00745 5.05431 5.16518 5.30951 5.36305 5.41540 5.53325 5.59559 5.74671 5.81182 5.88428 6.41846 6.53049 7.14587 7.16635 7.58895 7.99644 8.70707 Molecular weight = 287.13amu Principal moments of inertia in cm(-1) A = 0.021075 B = 0.004629 C = 0.004087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1328.270914 B = 6047.049726 C = 6848.682597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.262 4.262 2 C -0.139 4.139 3 C 0.239 3.761 4 N -0.445 5.445 5 C -0.369 4.369 6 H 0.126 0.874 7 C 0.004 3.996 8 N -0.866 5.866 9 Si 0.974 3.026 10 H -0.275 1.275 11 H -0.286 1.286 12 H -0.261 1.261 13 C 0.452 3.548 14 O -0.627 6.627 15 C -0.048 4.048 16 H 0.101 0.899 17 C -0.136 4.136 18 C -0.029 4.029 19 C -0.133 4.133 20 C -0.088 4.088 21 C -0.209 4.209 22 C 0.115 3.885 23 O -0.336 6.336 24 C 0.018 3.982 25 C -0.164 4.164 26 H 0.233 0.767 27 H 0.063 0.937 28 H 0.096 0.904 29 H 0.269 0.731 30 H 0.044 0.956 31 H 0.076 0.924 32 H 0.080 0.920 33 H 0.102 0.898 34 H 0.146 0.854 35 H 0.155 0.845 36 H 0.067 0.933 37 H 0.119 0.881 38 H 0.061 0.939 39 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.623 -10.999 6.222 14.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.280 4.280 2 C -0.141 4.141 3 C 0.117 3.883 4 N -0.162 5.162 5 C -0.495 4.495 6 H 0.143 0.857 7 C -0.200 4.200 8 N -0.502 5.502 9 Si 0.798 3.202 10 H -0.201 1.201 11 H -0.211 1.211 12 H -0.185 1.185 13 C 0.242 3.758 14 O -0.516 6.516 15 C -0.069 4.069 16 H 0.119 0.881 17 C -0.194 4.194 18 C -0.029 4.029 19 C -0.152 4.152 20 C -0.105 4.105 21 C -0.227 4.227 22 C 0.070 3.930 23 O -0.251 6.251 24 C -0.076 4.076 25 C -0.182 4.182 26 H 0.250 0.750 27 H 0.081 0.919 28 H 0.114 0.886 29 H 0.080 0.920 30 H 0.063 0.937 31 H 0.095 0.905 32 H 0.099 0.901 33 H 0.120 0.880 34 H 0.163 0.837 35 H 0.173 0.827 36 H 0.086 0.914 37 H 0.138 0.862 38 H 0.080 0.920 39 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 6.616 -10.664 6.550 14.157 hybrid contribution -0.346 0.554 -0.775 1.013 sum 6.270 -10.111 5.776 13.225 Atomic orbital electron populations 1.25058 0.96293 1.00896 1.05741 1.23457 0.95053 0.99607 0.95983 1.18105 0.84730 0.87172 0.98321 1.43974 1.55000 1.10638 1.06569 1.20133 1.44347 1.04764 0.80218 0.85688 1.25974 0.95086 0.96113 1.02875 1.70335 1.23048 1.20151 1.36664 0.85244 0.79617 0.77411 0.77951 1.20052 1.21122 1.18500 1.20501 0.83682 0.86523 0.85115 1.90520 1.61267 1.80459 1.19316 1.19959 1.00391 0.91489 0.95100 0.88131 1.21846 0.97239 0.99990 1.00286 1.19322 0.92816 0.95361 0.95429 1.20867 0.99212 0.99730 0.95364 1.21155 0.96369 0.96292 0.96725 1.21421 0.93274 1.06881 1.01172 1.18973 0.83796 0.95664 0.94614 1.86029 1.23275 1.71119 1.44633 1.23342 1.03707 0.95454 0.85086 1.20362 0.95678 1.03594 0.98586 0.75020 0.91931 0.88596 0.92045 0.93691 0.90515 0.90075 0.87953 0.83661 0.82715 0.91443 0.86248 0.92013 0.85093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.26 -11.82 19.25 74.32 1.43 -10.39 16 2 C -0.14 -7.03 11.42 31.12 0.36 -6.67 16 3 C 0.24 12.07 5.23 84.57 0.44 12.52 16 4 N -0.44 -22.34 2.59 -645.42 -1.67 -24.01 16 5 C -0.37 -17.84 8.06 84.04 0.68 -17.16 16 6 H 0.13 5.58 4.90 -2.91 -0.01 5.56 16 7 C 0.00 0.19 4.88 84.92 0.41 0.61 16 8 N -0.87 -43.85 9.13 21.66 0.20 -43.65 16 9 Si 0.97 37.95 29.64 68.60 2.03 39.98 16 10 H -0.27 -10.53 7.11 99.48 0.71 -9.83 16 11 H -0.29 -11.22 7.11 99.48 0.71 -10.51 16 12 H -0.26 -9.81 7.11 99.48 0.71 -9.11 16 13 C 0.45 21.96 6.89 87.66 0.60 22.56 16 14 O -0.63 -33.65 14.42 -3.07 -0.04 -33.69 16 15 C -0.05 -1.92 2.07 -12.29 -0.03 -1.94 16 16 H 0.10 3.79 7.42 -2.39 -0.02 3.77 16 17 C -0.14 -4.90 8.61 71.98 0.62 -4.28 16 18 C -0.03 -1.07 4.46 -19.88 -0.09 -1.16 16 19 C -0.13 -4.84 7.84 22.28 0.17 -4.67 16 20 C -0.09 -2.56 10.04 22.26 0.22 -2.34 16 21 C -0.21 -5.52 9.04 22.36 0.20 -5.32 16 22 C 0.11 3.43 6.69 22.50 0.15 3.58 16 23 O -0.34 -8.81 10.50 -92.44 -0.97 -9.78 16 24 C 0.02 0.28 9.81 113.37 1.11 1.40 16 25 C -0.16 -5.54 9.61 22.37 0.21 -5.33 16 26 H 0.23 8.23 7.80 -4.43 -0.03 8.19 16 27 H 0.06 3.13 7.36 -2.39 -0.02 3.12 16 28 H 0.10 4.90 6.32 -2.39 -0.02 4.88 16 29 H 0.27 13.05 8.31 -92.71 -0.77 12.28 16 30 H 0.04 1.65 7.32 -2.39 -0.02 1.63 16 31 H 0.08 2.99 5.25 -2.39 -0.01 2.98 16 32 H 0.08 2.40 8.14 -2.39 -0.02 2.38 16 33 H 0.10 4.04 7.33 -2.91 -0.02 4.02 16 34 H 0.15 3.37 8.06 -2.91 -0.02 3.35 16 35 H 0.16 2.92 6.30 -2.91 -0.02 2.90 16 36 H 0.07 0.86 7.66 -2.39 -0.02 0.84 16 37 H 0.12 1.27 8.14 -2.39 -0.02 1.25 16 38 H 0.06 0.87 7.66 -2.39 -0.02 0.85 16 39 H 0.13 4.16 7.94 -2.91 -0.02 4.13 16 Total: -1.00 -64.17 327.43 7.11 -57.06 By element: Atomic # 1 Polarization: 31.63 SS G_CDS: 1.06 Total: 32.69 kcal Atomic # 6 Polarization: -25.10 SS G_CDS: 6.51 Total: -18.59 kcal Atomic # 7 Polarization: -66.19 SS G_CDS: -1.48 Total: -67.67 kcal Atomic # 8 Polarization: -42.46 SS G_CDS: -1.01 Total: -43.47 kcal Atomic # 14 Polarization: 37.95 SS G_CDS: 2.03 Total: 39.98 kcal Total: -64.17 7.11 -57.06 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490964045.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.309 kcal (2) G-P(sol) polarization free energy of solvation -64.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.060 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds