Wall clock time and date at job start Tue Mar 31 2020 06:16:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 N 1.46506 * 109.46744 * 261.58990 * 3 2 1 5 5 C 1.37091 * 119.99709 * 95.42342 * 4 3 2 6 6 H 1.08003 * 120.00266 * 163.55348 * 5 4 3 7 7 C 1.38956 * 119.99907 * 343.54457 * 5 4 3 8 8 N 1.31403 * 120.00048 * 340.88344 * 7 5 4 9 9 Si 1.86801 * 119.99436 * 160.88264 * 7 5 4 10 10 H 1.48501 * 109.47768 * 0.02562 * 9 7 5 11 11 H 1.48502 * 109.46986 * 120.00464 * 9 7 5 12 12 H 1.48506 * 109.46893 * 239.99834 * 9 7 5 13 13 C 1.34770 * 119.99890 * 275.41689 * 4 3 2 14 14 O 1.21296 * 120.00039 * 185.31212 * 13 4 3 15 15 C 1.50705 * 120.00467 * 5.31471 * 13 4 3 16 16 H 1.08997 * 109.46891 * 26.77591 * 15 13 4 17 17 C 1.52999 * 109.47373 * 146.77478 * 15 13 4 18 18 C 1.52994 * 109.46906 * 266.77945 * 15 13 4 19 19 O 1.42906 * 109.47207 * 174.99869 * 18 15 13 20 20 C 1.35898 * 117.00274 * 179.97438 * 19 18 15 21 21 C 1.38738 * 120.05358 * 359.72575 * 20 19 18 22 22 C 1.38142 * 119.94046 * 179.73910 * 21 20 19 23 23 C 1.38267 * 120.05940 * 0.51752 * 22 21 20 24 24 C 1.38271 * 120.10870 * 359.75794 * 23 22 21 25 25 C 1.38146 * 120.05453 * 359.97438 * 24 23 22 26 26 H 4.40646 * 5.51444 * 179.97438 * 4 1 2 27 27 H 1.08998 * 109.46327 * 141.59830 * 3 2 1 28 28 H 1.08993 * 109.47564 * 21.59618 * 3 2 1 29 29 H 0.97006 * 119.99866 * 179.97438 * 8 7 5 30 30 H 1.08995 * 109.47342 * 185.41689 * 17 15 13 31 31 H 1.09000 * 109.46898 * 305.41851 * 17 15 13 32 32 H 1.09000 * 109.46926 * 65.42079 * 17 15 13 33 33 H 1.09010 * 109.47315 * 294.99170 * 18 15 13 34 34 H 1.08993 * 109.47991 * 54.99511 * 18 15 13 35 35 H 1.08003 * 120.03018 * 359.97438 * 21 20 19 36 36 H 1.08007 * 119.96984 * 180.27493 * 22 21 20 37 37 H 1.07996 * 119.94537 * 179.74620 * 23 22 21 38 38 H 1.07992 * 119.97200 * 179.97438 * 24 23 22 39 39 H 1.07996 * 120.02777 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1342 0.2029 1.3665 5 6 3.4689 -0.8772 2.1416 6 1 4.0680 -0.7397 3.0296 7 6 3.0372 -2.1489 1.7848 8 7 2.0274 -2.2915 0.9562 9 14 3.8925 -3.6555 2.4832 10 1 4.9911 -3.2273 3.3860 11 1 2.9141 -4.4706 3.2470 12 1 4.4520 -4.4666 1.3721 13 6 3.2543 1.4507 1.8613 14 8 3.7483 1.6243 2.9555 15 6 2.7749 2.6305 1.0554 16 1 1.9780 2.3117 0.3835 17 6 2.2443 3.7113 1.9993 18 6 3.9374 3.1946 0.2362 19 8 3.4584 4.2379 -0.6149 20 6 4.3710 4.8498 -1.4146 21 6 5.7014 4.4580 -1.3768 22 6 6.6262 5.0779 -2.1947 23 6 6.2289 6.0952 -3.0427 24 6 4.9046 6.4913 -3.0780 25 6 3.9749 5.8708 -2.2661 26 1 -1.0501 0.0002 -0.0001 27 1 3.0089 0.8062 -0.6384 28 1 3.0098 -0.9546 -0.3782 29 1 1.7263 -3.1793 0.7069 30 1 1.8100 4.5226 1.4152 31 1 1.4815 3.2830 2.6497 32 1 3.0633 4.0982 2.6056 33 1 4.6960 3.5945 0.9093 34 1 4.3727 2.4013 -0.3713 35 1 6.0131 3.6665 -0.7113 36 1 7.6612 4.7703 -2.1689 37 1 6.9541 6.5813 -3.6783 38 1 4.5968 7.2864 -3.7408 39 1 2.9408 6.1808 -2.2938 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000490984438.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:45 Heat of formation + Delta-G solvation = 17.871767 kcal Electronic energy + Delta-G solvation = -22321.328155 eV Core-core repulsion = 19003.570129 eV Total energy + Delta-G solvation = -3317.758026 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 287.131 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.13212 -38.94415 -37.31132 -35.34008 -33.29741 -31.95663 -31.24122 -31.02000 -29.68984 -26.75349 -26.38127 -25.09976 -22.96673 -22.41742 -21.40900 -18.70101 -18.20053 -17.88073 -16.74670 -16.42308 -16.03213 -15.82292 -15.48211 -14.71284 -14.46579 -14.18850 -14.04650 -13.55199 -13.40788 -13.01880 -12.83517 -12.45003 -12.33125 -12.16245 -11.81437 -11.62507 -11.47991 -11.22176 -11.09059 -10.95461 -10.54270 -10.51972 -10.41498 -10.34158 -9.39631 -9.34503 -9.04560 -8.92652 -8.49517 -8.17793 -7.94035 -6.39239 -3.92934 1.29996 1.43387 3.04105 3.18973 3.22444 3.29343 3.64039 3.76868 3.89354 4.02447 4.14328 4.79163 4.84020 4.89258 4.97076 5.08574 5.11195 5.21614 5.33876 5.38286 5.44014 5.53995 5.59773 5.76304 5.89599 5.95738 5.98675 6.22732 6.30428 6.33318 6.38861 6.44610 6.48008 6.65710 6.72989 6.77007 7.00105 7.49848 7.50298 7.96735 8.35000 8.77555 9.05592 9.27755 9.81614 10.60872 Molecular weight = 287.13amu Principal moments of inertia in cm(-1) A = 0.020644 B = 0.004097 C = 0.003961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1355.995866 B = 6832.361746 C = 7067.363294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.259 4.259 2 C -0.114 4.114 3 C 0.230 3.770 4 N -0.436 5.436 5 C -0.315 4.315 6 H 0.107 0.893 7 C 0.031 3.969 8 N -0.863 5.863 9 Si 0.923 3.077 10 H -0.267 1.267 11 H -0.282 1.282 12 H -0.280 1.280 13 C 0.455 3.545 14 O -0.578 6.578 15 C -0.104 4.104 16 H 0.093 0.907 17 C -0.124 4.124 18 C 0.074 3.926 19 O -0.310 6.310 20 C 0.138 3.862 21 C -0.210 4.210 22 C -0.080 4.080 23 C -0.167 4.167 24 C -0.084 4.084 25 C -0.157 4.157 26 H 0.200 0.800 27 H 0.059 0.941 28 H 0.115 0.885 29 H 0.269 0.731 30 H 0.058 0.942 31 H 0.057 0.943 32 H 0.060 0.940 33 H 0.069 0.931 34 H 0.065 0.935 35 H 0.130 0.870 36 H 0.123 0.877 37 H 0.120 0.880 38 H 0.126 0.874 39 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.607 11.619 -9.200 15.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.277 4.277 2 C -0.116 4.116 3 C 0.107 3.893 4 N -0.154 5.154 5 C -0.442 4.442 6 H 0.124 0.876 7 C -0.173 4.173 8 N -0.501 5.501 9 Si 0.749 3.251 10 H -0.192 1.192 11 H -0.208 1.208 12 H -0.205 1.205 13 C 0.243 3.757 14 O -0.462 6.462 15 C -0.126 4.126 16 H 0.112 0.888 17 C -0.181 4.181 18 C -0.002 4.002 19 O -0.224 6.224 20 C 0.092 3.908 21 C -0.229 4.229 22 C -0.098 4.098 23 C -0.185 4.185 24 C -0.102 4.102 25 C -0.176 4.176 26 H 0.217 0.783 27 H 0.077 0.923 28 H 0.133 0.867 29 H 0.079 0.921 30 H 0.077 0.923 31 H 0.076 0.924 32 H 0.079 0.921 33 H 0.088 0.912 34 H 0.083 0.917 35 H 0.148 0.852 36 H 0.141 0.859 37 H 0.138 0.862 38 H 0.143 0.857 39 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 3.574 11.529 -8.697 14.877 hybrid contribution 0.089 -1.168 0.240 1.196 sum 3.663 10.361 -8.457 13.867 Atomic orbital electron populations 1.24294 0.95393 1.05944 1.02111 1.23125 0.94315 0.95782 0.98348 1.18389 0.84423 1.02064 0.84471 1.43783 1.55400 1.04935 1.11232 1.19767 1.31111 0.83930 1.09429 0.87566 1.25314 0.95226 0.99304 0.97474 1.70075 1.21690 1.23820 1.34506 0.85918 0.79501 0.80858 0.78784 1.19155 1.20813 1.20540 1.19713 0.85265 0.83629 0.87126 1.90526 1.48547 1.84910 1.22215 1.21283 0.97852 0.95849 0.97600 0.88839 1.21508 1.01304 0.96919 0.98389 1.22833 0.97333 0.88295 0.91703 1.86077 1.35462 1.49333 1.51495 1.19105 0.88324 0.92520 0.90870 1.21390 0.92856 1.04370 1.04243 1.20957 0.99120 0.95105 0.94623 1.21016 0.96256 0.99649 1.01606 1.20929 0.92885 0.98717 0.97640 1.20455 1.00776 0.97702 0.98639 0.78302 0.92281 0.86701 0.92051 0.92332 0.92397 0.92082 0.91250 0.91723 0.85234 0.85943 0.86214 0.85652 0.85295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.26 -5.33 19.25 29.55 0.57 -4.76 16 2 C -0.11 -2.54 10.36 -37.12 -0.38 -2.93 16 3 C 0.23 5.05 4.78 -6.82 -0.03 5.01 16 4 N -0.44 -10.79 2.60 -117.93 -0.31 -11.09 16 5 C -0.32 -8.49 9.38 -14.93 -0.14 -8.63 16 6 H 0.11 3.02 7.33 -52.48 -0.38 2.63 16 7 C 0.03 0.79 4.95 -17.47 -0.09 0.70 16 8 N -0.86 -22.18 9.28 55.50 0.52 -21.66 16 9 Si 0.92 20.10 29.59 -169.99 -5.03 15.07 16 10 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 11 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 12 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 13 C 0.45 10.81 6.58 -10.99 -0.07 10.73 16 14 O -0.58 -15.58 15.98 5.54 0.09 -15.49 16 15 C -0.10 -1.97 2.13 -91.77 -0.20 -2.17 16 16 H 0.09 1.78 5.82 -51.93 -0.30 1.48 16 17 C -0.12 -2.17 8.58 37.16 0.32 -1.85 16 18 C 0.07 1.22 3.93 37.15 0.15 1.36 16 19 O -0.31 -4.87 9.77 -19.42 -0.19 -5.06 16 20 C 0.14 1.95 6.69 -39.22 -0.26 1.69 16 21 C -0.21 -2.76 9.04 -39.43 -0.36 -3.11 16 22 C -0.08 -0.89 10.04 -39.61 -0.40 -1.29 16 23 C -0.17 -1.70 10.04 -39.56 -0.40 -2.10 16 24 C -0.08 -0.86 10.04 -39.60 -0.40 -1.26 16 25 C -0.16 -1.92 9.99 -39.43 -0.39 -2.32 16 26 H 0.20 3.33 7.80 -54.09 -0.42 2.91 16 27 H 0.06 1.11 6.04 -51.93 -0.31 0.80 16 28 H 0.12 2.66 6.31 -51.93 -0.33 2.33 16 29 H 0.27 6.61 8.31 -40.82 -0.34 6.27 16 30 H 0.06 0.89 7.97 -51.93 -0.41 0.48 16 31 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 32 H 0.06 1.08 8.03 -51.93 -0.42 0.66 16 33 H 0.07 1.13 7.65 -51.92 -0.40 0.73 16 34 H 0.06 1.03 6.79 -51.93 -0.35 0.68 16 35 H 0.13 1.67 6.30 -52.48 -0.33 1.34 16 36 H 0.12 1.10 8.06 -52.48 -0.42 0.68 16 37 H 0.12 0.93 8.06 -52.49 -0.42 0.50 16 38 H 0.13 0.95 8.06 -52.49 -0.42 0.52 16 39 H 0.13 1.41 8.06 -52.49 -0.42 0.99 16 LS Contribution 333.04 15.07 5.02 5.02 Total: -1.00 -30.40 333.04 -6.90 -37.29 By element: Atomic # 1 Polarization: 11.75 SS G_CDS: -4.91 Total: 6.84 kcal Atomic # 6 Polarization: -8.84 SS G_CDS: -2.08 Total: -10.92 kcal Atomic # 7 Polarization: -32.97 SS G_CDS: 0.21 Total: -32.76 kcal Atomic # 8 Polarization: -20.45 SS G_CDS: -0.10 Total: -20.55 kcal Atomic # 14 Polarization: 20.10 SS G_CDS: -5.03 Total: 15.07 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -30.40 -6.90 -37.29 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490984438.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.166 kcal (2) G-P(sol) polarization free energy of solvation -30.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.294 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds