Wall clock time and date at job start Tue Mar 31 2020 06:16:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 N 1.46506 * 109.46744 * 261.58990 * 3 2 1 5 5 C 1.37091 * 119.99709 * 95.42342 * 4 3 2 6 6 H 1.08003 * 120.00266 * 163.55348 * 5 4 3 7 7 C 1.38956 * 119.99907 * 343.54457 * 5 4 3 8 8 N 1.31403 * 120.00048 * 340.88344 * 7 5 4 9 9 Si 1.86801 * 119.99436 * 160.88264 * 7 5 4 10 10 H 1.48501 * 109.47768 * 0.02562 * 9 7 5 11 11 H 1.48502 * 109.46986 * 120.00464 * 9 7 5 12 12 H 1.48506 * 109.46893 * 239.99834 * 9 7 5 13 13 C 1.34770 * 119.99890 * 275.41689 * 4 3 2 14 14 O 1.21296 * 120.00039 * 185.31212 * 13 4 3 15 15 C 1.50705 * 120.00467 * 5.31471 * 13 4 3 16 16 H 1.08997 * 109.46891 * 26.77591 * 15 13 4 17 17 C 1.52999 * 109.47373 * 146.77478 * 15 13 4 18 18 C 1.52994 * 109.46906 * 266.77945 * 15 13 4 19 19 O 1.42906 * 109.47207 * 174.99869 * 18 15 13 20 20 C 1.35898 * 117.00274 * 179.97438 * 19 18 15 21 21 C 1.38738 * 120.05358 * 359.72575 * 20 19 18 22 22 C 1.38142 * 119.94046 * 179.73910 * 21 20 19 23 23 C 1.38267 * 120.05940 * 0.51752 * 22 21 20 24 24 C 1.38271 * 120.10870 * 359.75794 * 23 22 21 25 25 C 1.38146 * 120.05453 * 359.97438 * 24 23 22 26 26 H 4.40646 * 5.51444 * 179.97438 * 4 1 2 27 27 H 1.08998 * 109.46327 * 141.59830 * 3 2 1 28 28 H 1.08993 * 109.47564 * 21.59618 * 3 2 1 29 29 H 0.97006 * 119.99866 * 179.97438 * 8 7 5 30 30 H 1.08995 * 109.47342 * 185.41689 * 17 15 13 31 31 H 1.09000 * 109.46898 * 305.41851 * 17 15 13 32 32 H 1.09000 * 109.46926 * 65.42079 * 17 15 13 33 33 H 1.09010 * 109.47315 * 294.99170 * 18 15 13 34 34 H 1.08993 * 109.47991 * 54.99511 * 18 15 13 35 35 H 1.08003 * 120.03018 * 359.97438 * 21 20 19 36 36 H 1.08007 * 119.96984 * 180.27493 * 22 21 20 37 37 H 1.07996 * 119.94537 * 179.74620 * 23 22 21 38 38 H 1.07992 * 119.97200 * 179.97438 * 24 23 22 39 39 H 1.07996 * 120.02777 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1342 0.2029 1.3665 5 6 3.4689 -0.8772 2.1416 6 1 4.0680 -0.7397 3.0296 7 6 3.0372 -2.1489 1.7848 8 7 2.0274 -2.2915 0.9562 9 14 3.8925 -3.6555 2.4832 10 1 4.9911 -3.2273 3.3860 11 1 2.9141 -4.4706 3.2470 12 1 4.4520 -4.4666 1.3721 13 6 3.2543 1.4507 1.8613 14 8 3.7483 1.6243 2.9555 15 6 2.7749 2.6305 1.0554 16 1 1.9780 2.3117 0.3835 17 6 2.2443 3.7113 1.9993 18 6 3.9374 3.1946 0.2362 19 8 3.4584 4.2379 -0.6149 20 6 4.3710 4.8498 -1.4146 21 6 5.7014 4.4580 -1.3768 22 6 6.6262 5.0779 -2.1947 23 6 6.2289 6.0952 -3.0427 24 6 4.9046 6.4913 -3.0780 25 6 3.9749 5.8708 -2.2661 26 1 -1.0501 0.0002 -0.0001 27 1 3.0089 0.8062 -0.6384 28 1 3.0098 -0.9546 -0.3782 29 1 1.7263 -3.1793 0.7069 30 1 1.8100 4.5226 1.4152 31 1 1.4815 3.2830 2.6497 32 1 3.0633 4.0982 2.6056 33 1 4.6960 3.5945 0.9093 34 1 4.3727 2.4013 -0.3713 35 1 6.0131 3.6665 -0.7113 36 1 7.6612 4.7703 -2.1689 37 1 6.9541 6.5813 -3.6783 38 1 4.5968 7.2864 -3.7408 39 1 2.9408 6.1808 -2.2938 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000490984438.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:45 Heat of formation + Delta-G solvation = 1.727940 kcal Electronic energy + Delta-G solvation = -22322.028204 eV Core-core repulsion = 19003.570129 eV Total energy + Delta-G solvation = -3318.458074 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 287.131 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.33884 -40.55863 -38.39328 -37.22157 -34.87919 -33.74661 -33.06174 -31.90627 -30.65079 -28.46398 -27.81659 -26.91562 -24.33680 -23.41049 -22.59073 -20.32866 -19.74273 -19.35369 -18.42211 -18.12179 -17.19560 -16.91217 -16.73278 -16.44879 -16.00277 -15.74221 -15.27594 -14.89803 -14.60179 -14.30209 -14.27944 -14.10545 -13.92867 -13.53897 -13.46738 -13.04320 -12.81174 -12.60847 -12.47959 -12.44812 -12.14664 -12.10886 -11.80722 -11.66250 -11.24883 -11.09469 -10.68123 -10.39370 -9.92170 -9.88191 -9.15189 -8.34851 -5.97067 0.42343 0.52317 1.31817 1.42128 1.54992 1.70549 1.96409 2.26880 2.30250 2.39022 2.88155 3.01979 3.16577 3.65521 3.75134 3.81478 3.95859 3.97630 4.03846 4.20677 4.33053 4.41375 4.45645 4.53134 4.57526 4.65524 4.76515 4.88704 4.94066 4.99171 5.12489 5.20765 5.39411 5.41022 5.44500 5.52091 5.62935 5.89099 6.00415 6.39014 6.42521 7.08711 7.10866 7.35203 7.90540 8.63206 Molecular weight = 287.13amu Principal moments of inertia in cm(-1) A = 0.020644 B = 0.004097 C = 0.003961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1355.995866 B = 6832.361746 C = 7067.363294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.157 4.157 3 C 0.234 3.766 4 N -0.446 5.446 5 C -0.353 4.353 6 H 0.079 0.921 7 C 0.004 3.996 8 N -0.872 5.872 9 Si 0.986 3.014 10 H -0.274 1.274 11 H -0.279 1.279 12 H -0.265 1.265 13 C 0.447 3.553 14 O -0.620 6.620 15 C -0.094 4.094 16 H 0.095 0.905 17 C -0.118 4.118 18 C 0.088 3.912 19 O -0.318 6.318 20 C 0.106 3.894 21 C -0.227 4.227 22 C -0.087 4.087 23 C -0.162 4.162 24 C -0.081 4.081 25 C -0.166 4.166 26 H 0.235 0.765 27 H 0.086 0.914 28 H 0.099 0.901 29 H 0.273 0.727 30 H 0.085 0.915 31 H 0.045 0.955 32 H 0.054 0.946 33 H 0.066 0.934 34 H 0.065 0.935 35 H 0.122 0.878 36 H 0.143 0.857 37 H 0.151 0.849 38 H 0.158 0.842 39 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.534 12.520 -11.184 17.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.259 4.259 2 C -0.159 4.159 3 C 0.112 3.888 4 N -0.163 5.163 5 C -0.481 4.481 6 H 0.097 0.903 7 C -0.199 4.199 8 N -0.509 5.509 9 Si 0.810 3.190 10 H -0.199 1.199 11 H -0.205 1.205 12 H -0.189 1.189 13 C 0.237 3.763 14 O -0.507 6.507 15 C -0.115 4.115 16 H 0.114 0.886 17 C -0.176 4.176 18 C 0.012 3.988 19 O -0.232 6.232 20 C 0.061 3.939 21 C -0.246 4.246 22 C -0.105 4.105 23 C -0.180 4.180 24 C -0.098 4.098 25 C -0.184 4.184 26 H 0.252 0.748 27 H 0.104 0.896 28 H 0.117 0.883 29 H 0.084 0.916 30 H 0.103 0.897 31 H 0.064 0.936 32 H 0.073 0.927 33 H 0.084 0.916 34 H 0.083 0.917 35 H 0.140 0.860 36 H 0.160 0.840 37 H 0.168 0.832 38 H 0.176 0.824 39 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 3.486 12.436 -10.724 16.787 hybrid contribution 0.100 -1.378 0.778 1.585 sum 3.586 11.058 -9.946 15.299 Atomic orbital electron populations 1.25185 0.96367 1.04139 1.00197 1.23378 0.94937 0.97477 1.00094 1.18369 0.84871 1.02249 0.83334 1.43950 1.55353 1.04873 1.12093 1.19676 1.32756 0.85680 1.09949 0.90335 1.25987 0.95329 1.01049 0.97562 1.70164 1.21680 1.24587 1.34431 0.85000 0.78209 0.77473 0.78362 1.19877 1.20509 1.18927 1.20477 0.84168 0.84569 0.87103 1.90483 1.50313 1.85703 1.24237 1.21123 0.98540 0.94324 0.97554 0.88636 1.21487 1.00795 0.97074 0.98210 1.22491 0.95829 0.88814 0.91679 1.86009 1.36061 1.49224 1.51922 1.19418 0.88603 0.93897 0.92005 1.21489 0.93135 1.04881 1.05072 1.21277 0.99799 0.95197 0.94241 1.21446 0.96931 0.98687 1.00900 1.21347 0.92594 0.98799 0.97100 1.20732 1.01868 0.97295 0.98542 0.74829 0.89621 0.88289 0.91637 0.89659 0.93551 0.92651 0.91595 0.91661 0.86023 0.83967 0.83167 0.82439 0.84426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.24 -9.54 19.25 74.32 1.43 -8.11 16 2 C -0.16 -6.97 10.36 31.13 0.32 -6.64 16 3 C 0.23 10.44 4.78 84.57 0.40 10.85 16 4 N -0.45 -22.79 2.60 -645.41 -1.68 -24.46 16 5 C -0.35 -19.76 9.38 84.04 0.79 -18.97 16 6 H 0.08 4.73 7.33 -2.91 -0.02 4.71 16 7 C 0.00 0.22 4.95 84.93 0.42 0.64 16 8 N -0.87 -44.77 9.28 21.66 0.20 -44.57 16 9 Si 0.99 41.56 29.59 68.60 2.03 43.59 16 10 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 11 H -0.28 -11.62 7.11 99.48 0.71 -10.92 16 12 H -0.26 -10.47 7.11 99.48 0.71 -9.76 16 13 C 0.45 22.04 6.58 87.66 0.58 22.62 16 14 O -0.62 -35.06 15.98 -3.08 -0.05 -35.10 16 15 C -0.09 -3.61 2.13 -11.54 -0.02 -3.63 16 16 H 0.10 3.63 5.82 -2.39 -0.01 3.62 16 17 C -0.12 -4.16 8.58 71.98 0.62 -3.54 16 18 C 0.09 2.93 3.93 71.98 0.28 3.22 16 19 O -0.32 -9.90 9.77 -92.41 -0.90 -10.80 16 20 C 0.11 2.93 6.69 22.51 0.15 3.08 16 21 C -0.23 -5.87 9.04 22.37 0.20 -5.67 16 22 C -0.09 -1.79 10.04 22.25 0.22 -1.56 16 23 C -0.16 -2.77 10.04 22.28 0.22 -2.54 16 24 C -0.08 -1.41 10.04 22.26 0.22 -1.19 16 25 C -0.17 -3.77 9.99 22.36 0.22 -3.54 16 26 H 0.24 7.14 7.80 -4.41 -0.03 7.10 16 27 H 0.09 3.25 6.04 -2.39 -0.01 3.24 16 28 H 0.10 4.68 6.31 -2.39 -0.02 4.66 16 29 H 0.27 13.24 8.31 -92.70 -0.77 12.47 16 30 H 0.08 2.52 7.97 -2.39 -0.02 2.50 16 31 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 32 H 0.05 1.99 8.03 -2.39 -0.02 1.97 16 33 H 0.07 2.22 7.65 -2.38 -0.02 2.21 16 34 H 0.07 2.13 6.79 -2.39 -0.02 2.12 16 35 H 0.12 3.22 6.30 -2.91 -0.02 3.20 16 36 H 0.14 2.25 8.06 -2.91 -0.02 2.22 16 37 H 0.15 1.65 8.06 -2.91 -0.02 1.63 16 38 H 0.16 1.70 8.06 -2.91 -0.02 1.68 16 39 H 0.14 2.77 8.06 -2.91 -0.02 2.75 16 Total: -1.00 -67.05 333.04 6.71 -60.33 By element: Atomic # 1 Polarization: 24.97 SS G_CDS: 1.05 Total: 26.02 kcal Atomic # 6 Polarization: -21.07 SS G_CDS: 6.07 Total: -15.00 kcal Atomic # 7 Polarization: -67.56 SS G_CDS: -1.48 Total: -69.04 kcal Atomic # 8 Polarization: -44.96 SS G_CDS: -0.95 Total: -45.91 kcal Atomic # 14 Polarization: 41.56 SS G_CDS: 2.03 Total: 43.59 kcal Total: -67.05 6.71 -60.33 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490984438.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.060 kcal (2) G-P(sol) polarization free energy of solvation -67.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.332 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds