Wall clock time and date at job start Tue Mar 31 2020 05:51:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.47091 * 2 1 4 4 O 1.42903 * 109.46778 * 119.99648 * 2 1 3 5 5 C 1.42899 * 113.99884 * 151.41009 * 4 2 1 6 6 C 1.53354 * 109.42025 * 271.77027 * 5 4 2 7 7 C 1.53191 * 109.14974 * 178.67434 * 6 5 4 8 8 N 1.46922 * 108.89329 * 54.57822 * 7 6 5 9 9 C 1.34772 * 120.63152 * 126.34146 * 8 7 6 10 10 O 1.21284 * 120.00049 * 359.97438 * 9 8 7 11 11 C 1.50699 * 120.00171 * 179.97438 * 9 8 7 12 12 S 1.80999 * 109.47314 * 179.97438 * 11 9 8 13 13 C 1.76207 * 100.00153 * 179.97438 * 12 11 9 14 14 H 1.08001 * 120.00021 * 0.02562 * 13 12 11 15 15 C 1.38797 * 119.99796 * 180.02562 * 13 12 11 16 16 N 1.31635 * 119.99626 * 180.02562 * 15 13 12 17 17 Si 1.86800 * 120.00194 * 359.97438 * 15 13 12 18 18 H 1.48496 * 109.46899 * 90.00634 * 17 15 13 19 19 H 1.48507 * 109.47062 * 210.00267 * 17 15 13 20 20 H 1.48496 * 109.47267 * 329.99989 * 17 15 13 21 21 C 1.46928 * 118.73989 * 306.31761 * 8 7 6 22 22 C 1.53042 * 109.46295 * 151.64118 * 5 4 2 23 23 H 1.09005 * 109.47032 * 64.32301 * 1 2 3 24 24 H 1.08994 * 109.47445 * 184.32284 * 1 2 3 25 25 H 1.08997 * 109.47029 * 304.32568 * 1 2 3 26 26 H 1.08996 * 109.47058 * 239.99749 * 2 1 3 27 27 H 1.09005 * 109.47102 * 179.97438 * 3 2 1 28 28 H 1.09001 * 109.47251 * 299.99186 * 3 2 1 29 29 H 1.08996 * 109.47375 * 59.99943 * 3 2 1 30 30 H 1.09006 * 109.45971 * 31.66823 * 5 4 2 31 31 H 1.08996 * 109.68414 * 58.70527 * 6 5 4 32 32 H 1.09005 * 109.47052 * 298.51404 * 6 5 4 33 33 H 1.08992 * 109.58677 * 294.71607 * 7 6 5 34 34 H 1.09004 * 109.58359 * 174.43824 * 7 6 5 35 35 H 1.08997 * 109.47432 * 300.00031 * 11 9 8 36 36 H 1.09004 * 109.47247 * 60.00050 * 11 9 8 37 37 H 0.96997 * 120.00026 * 180.02562 * 16 15 13 38 38 H 1.09002 * 109.58928 * 173.39696 * 21 8 7 39 39 H 1.09004 * 109.58736 * 293.68090 * 21 8 7 40 40 H 1.09003 * 109.49563 * 61.43079 * 22 5 4 41 41 H 1.09001 * 109.51934 * 301.35541 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6736 1.1669 5 6 3.2807 -1.2976 0.9983 6 6 3.0847 -2.7205 0.4609 7 6 4.4553 -3.3717 0.2512 8 7 5.2140 -3.2985 1.5072 9 6 5.7449 -4.4098 2.0545 10 8 5.5981 -5.4835 1.5100 11 6 6.5210 -4.3183 3.3430 12 16 7.1000 -5.9664 3.8170 13 6 7.9502 -5.5744 5.3098 14 1 7.9862 -4.5529 5.6586 15 6 8.5736 -6.5786 6.0375 16 7 9.2083 -6.2858 7.1530 17 14 8.5107 -8.3455 5.4348 18 1 9.6733 -8.6080 4.5490 19 1 8.5568 -9.2674 6.5982 20 1 7.2521 -8.5660 4.6782 21 6 5.3834 -1.9907 2.1551 22 6 4.0038 -1.3527 2.3460 23 1 -0.3633 0.4453 -0.9262 24 1 -0.3634 -1.0247 0.0775 25 1 -0.3633 0.5795 0.8487 26 1 1.8933 -0.5139 -0.8899 27 1 3.1300 1.4425 0.0005 28 1 1.6768 1.9563 -0.8901 29 1 1.6767 1.9563 0.8899 30 1 3.8762 -0.7215 0.2899 31 1 2.5501 -2.6840 -0.4883 32 1 2.5105 -3.3046 1.1801 33 1 4.9954 -2.8419 -0.5334 34 1 4.3240 -4.4149 -0.0362 35 1 7.3771 -3.6577 3.2055 36 1 5.8773 -3.9202 4.1274 37 1 9.6443 -6.9874 7.6614 38 1 5.8623 -2.1228 3.1253 39 1 6.0013 -1.3490 1.5269 40 1 3.4208 -1.9495 3.0474 41 1 4.1212 -0.3424 2.7379 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000548770518.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:56 Heat of formation + Delta-G solvation = -95.835976 kcal Electronic energy + Delta-G solvation = -20757.817255 eV Core-core repulsion = 17570.572443 eV Total energy + Delta-G solvation = -3187.244812 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 287.134 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.19154 -38.79608 -36.60819 -33.43217 -32.43597 -31.88760 -31.11969 -28.99040 -27.60077 -25.63350 -24.76584 -23.46386 -21.54734 -21.13613 -19.19425 -17.78457 -17.35615 -16.66675 -15.73898 -15.47871 -15.35693 -15.08976 -14.94973 -14.24849 -14.08851 -13.76118 -13.68755 -13.32811 -13.06619 -12.80093 -12.64388 -12.57657 -12.36156 -12.18076 -11.98058 -11.89107 -11.46589 -11.27169 -11.13844 -11.07888 -11.00613 -10.70059 -10.58508 -9.85513 -9.75204 -9.45469 -9.00136 -8.66104 -8.48787 -6.91859 -6.28698 -4.00460 2.69902 2.90429 3.17706 3.33438 3.34441 3.51090 3.58826 4.33276 4.43452 4.45877 4.59339 4.63609 4.74293 4.80567 4.84951 4.87710 5.04844 5.07823 5.10370 5.14118 5.22426 5.30840 5.40420 5.44576 5.48203 5.55069 5.61250 5.64491 5.74490 5.81342 5.83365 5.85361 5.90978 5.98647 6.05892 6.53629 7.02421 7.43622 7.94393 8.41538 8.42480 9.17565 10.80529 Molecular weight = 287.13amu Principal moments of inertia in cm(-1) A = 0.039303 B = 0.003105 C = 0.002989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 712.234433 B = 9014.743805 C = 9365.636841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.079 3.921 3 C -0.176 4.176 4 O -0.375 6.375 5 C 0.092 3.908 6 C -0.155 4.155 7 C 0.116 3.884 8 N -0.620 5.620 9 C 0.535 3.465 10 O -0.519 6.519 11 C -0.122 4.122 12 S -0.143 6.143 13 C -0.520 4.520 14 H 0.088 0.912 15 C 0.095 3.905 16 N -0.881 5.881 17 Si 0.857 3.143 18 H -0.267 1.267 19 H -0.274 1.274 20 H -0.235 1.235 21 C 0.110 3.890 22 C -0.131 4.131 23 H 0.067 0.933 24 H 0.062 0.938 25 H 0.062 0.938 26 H 0.059 0.941 27 H 0.056 0.944 28 H 0.063 0.937 29 H 0.063 0.937 30 H 0.061 0.939 31 H 0.073 0.927 32 H 0.077 0.923 33 H 0.064 0.936 34 H 0.096 0.904 35 H 0.097 0.903 36 H 0.098 0.902 37 H 0.271 0.729 38 H 0.097 0.903 39 H 0.070 0.930 40 H 0.078 0.922 41 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.209 15.502 -15.372 26.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.022 3.978 3 C -0.233 4.233 4 O -0.295 6.295 5 C 0.035 3.965 6 C -0.194 4.194 7 C -0.007 4.007 8 N -0.356 5.356 9 C 0.322 3.678 10 O -0.393 6.393 11 C -0.273 4.273 12 S 0.083 5.917 13 C -0.668 4.668 14 H 0.106 0.894 15 C -0.113 4.113 16 N -0.517 5.517 17 Si 0.682 3.318 18 H -0.192 1.192 19 H -0.199 1.199 20 H -0.159 1.159 21 C -0.013 4.013 22 C -0.169 4.169 23 H 0.086 0.914 24 H 0.081 0.919 25 H 0.082 0.918 26 H 0.077 0.923 27 H 0.075 0.925 28 H 0.082 0.918 29 H 0.083 0.917 30 H 0.079 0.921 31 H 0.092 0.908 32 H 0.095 0.905 33 H 0.082 0.918 34 H 0.114 0.886 35 H 0.115 0.885 36 H 0.116 0.884 37 H 0.081 0.919 38 H 0.115 0.885 39 H 0.088 0.912 40 H 0.097 0.903 41 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -14.417 13.830 -15.843 25.497 hybrid contribution 0.453 0.667 0.408 0.903 sum -13.964 14.497 -15.435 25.365 Atomic orbital electron populations 1.21857 0.93642 1.02883 1.02297 1.22091 0.95019 0.92295 0.88418 1.22324 1.01540 0.96902 1.02548 1.87986 1.35369 1.70438 1.35689 1.22149 0.84654 0.92393 0.97346 1.22510 0.97829 0.96841 1.02217 1.21461 0.90543 1.02994 0.85721 1.48102 1.55065 1.07560 1.24877 1.20309 0.78518 0.83150 0.85775 1.90686 1.58544 1.27410 1.62693 1.23316 1.02134 1.05071 0.96729 1.84801 1.69641 1.06112 1.31133 1.22306 1.38408 0.98863 1.07208 0.89380 1.24714 0.93490 0.99229 0.93888 1.69939 1.33318 1.34064 1.14392 0.86733 0.81396 0.84213 0.79506 1.19219 1.19948 1.15910 1.21729 0.96320 0.83870 0.99415 1.21987 0.95812 1.02243 0.96902 0.91424 0.91877 0.91847 0.92313 0.92492 0.91774 0.91746 0.92127 0.90824 0.90467 0.91803 0.88553 0.88505 0.88427 0.91941 0.88478 0.91196 0.90289 0.89933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.00 9.56 37.16 0.36 -0.64 16 2 C 0.08 0.61 3.12 -26.73 -0.08 0.52 16 3 C -0.18 -1.15 9.48 37.16 0.35 -0.79 16 4 O -0.38 -3.78 9.64 -35.23 -0.34 -4.12 16 5 C 0.09 0.86 2.36 -26.53 -0.06 0.79 16 6 C -0.16 -1.54 5.68 -26.45 -0.15 -1.69 16 7 C 0.12 1.33 6.42 -3.71 -0.02 1.31 16 8 N -0.62 -8.42 2.97 -172.77 -0.51 -8.93 16 9 C 0.53 9.74 7.72 -10.99 -0.08 9.66 16 10 O -0.52 -11.33 15.27 5.55 0.08 -11.24 16 11 C -0.12 -2.38 4.50 36.01 0.16 -2.22 16 12 S -0.14 -3.66 18.55 -107.50 -1.99 -5.65 16 13 C -0.52 -14.98 10.04 30.94 0.31 -14.67 16 14 H 0.09 2.63 8.03 -52.49 -0.42 2.21 16 15 C 0.10 2.80 5.50 -17.43 -0.10 2.70 16 16 N -0.88 -26.60 13.97 55.49 0.78 -25.82 16 17 Si 0.86 21.86 27.74 -169.99 -4.71 17.15 16 18 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 19 H -0.27 -6.74 7.11 56.52 0.40 -6.33 16 20 H -0.24 -6.00 6.74 56.52 0.38 -5.62 16 21 C 0.11 1.15 6.34 -3.71 -0.02 1.13 16 22 C -0.13 -1.26 5.73 -26.61 -0.15 -1.42 16 23 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 24 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 25 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.06 0.41 7.47 -51.93 -0.39 0.02 16 27 H 0.06 0.37 7.81 -51.93 -0.41 -0.03 16 28 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.06 0.49 7.49 -51.93 -0.39 0.10 16 31 H 0.07 0.61 7.79 -51.93 -0.40 0.21 16 32 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.10 1.28 7.00 -51.93 -0.36 0.92 16 35 H 0.10 1.75 7.94 -51.92 -0.41 1.34 16 36 H 0.10 1.78 7.69 -51.91 -0.40 1.38 16 37 H 0.27 7.60 8.31 -40.82 -0.34 7.26 16 38 H 0.10 1.04 5.93 -51.93 -0.31 0.73 16 39 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 40 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 41 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 LS Contribution 342.45 15.07 5.16 5.16 Total: -1.00 -33.54 342.45 -7.91 -41.45 By element: Atomic # 1 Polarization: 4.20 SS G_CDS: -6.88 Total: -2.67 kcal Atomic # 6 Polarization: -5.83 SS G_CDS: 0.50 Total: -5.33 kcal Atomic # 7 Polarization: -35.02 SS G_CDS: 0.26 Total: -34.75 kcal Atomic # 8 Polarization: -15.11 SS G_CDS: -0.25 Total: -15.36 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -4.71 Total: 17.15 kcal Atomic # 16 Polarization: -3.66 SS G_CDS: -1.99 Total: -5.65 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -33.54 -7.91 -41.45 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000548770518.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.381 kcal (2) G-P(sol) polarization free energy of solvation -33.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.455 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds