Wall clock time and date at job start Tue Mar 31 2020 05:51:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.47091 * 2 1 4 4 O 1.42903 * 109.46778 * 119.99648 * 2 1 3 5 5 C 1.42899 * 113.99884 * 151.41009 * 4 2 1 6 6 C 1.53354 * 109.42025 * 271.77027 * 5 4 2 7 7 C 1.53191 * 109.14974 * 178.67434 * 6 5 4 8 8 N 1.46922 * 108.89329 * 54.57822 * 7 6 5 9 9 C 1.34772 * 120.63152 * 126.34146 * 8 7 6 10 10 O 1.21284 * 120.00049 * 359.97438 * 9 8 7 11 11 C 1.50699 * 120.00171 * 179.97438 * 9 8 7 12 12 S 1.80999 * 109.47314 * 179.97438 * 11 9 8 13 13 C 1.76207 * 100.00153 * 179.97438 * 12 11 9 14 14 H 1.08001 * 120.00021 * 0.02562 * 13 12 11 15 15 C 1.38797 * 119.99796 * 180.02562 * 13 12 11 16 16 N 1.31635 * 119.99626 * 180.02562 * 15 13 12 17 17 Si 1.86800 * 120.00194 * 359.97438 * 15 13 12 18 18 H 1.48496 * 109.46899 * 90.00634 * 17 15 13 19 19 H 1.48507 * 109.47062 * 210.00267 * 17 15 13 20 20 H 1.48496 * 109.47267 * 329.99989 * 17 15 13 21 21 C 1.46928 * 118.73989 * 306.31761 * 8 7 6 22 22 C 1.53042 * 109.46295 * 151.64118 * 5 4 2 23 23 H 1.09005 * 109.47032 * 64.32301 * 1 2 3 24 24 H 1.08994 * 109.47445 * 184.32284 * 1 2 3 25 25 H 1.08997 * 109.47029 * 304.32568 * 1 2 3 26 26 H 1.08996 * 109.47058 * 239.99749 * 2 1 3 27 27 H 1.09005 * 109.47102 * 179.97438 * 3 2 1 28 28 H 1.09001 * 109.47251 * 299.99186 * 3 2 1 29 29 H 1.08996 * 109.47375 * 59.99943 * 3 2 1 30 30 H 1.09006 * 109.45971 * 31.66823 * 5 4 2 31 31 H 1.08996 * 109.68414 * 58.70527 * 6 5 4 32 32 H 1.09005 * 109.47052 * 298.51404 * 6 5 4 33 33 H 1.08992 * 109.58677 * 294.71607 * 7 6 5 34 34 H 1.09004 * 109.58359 * 174.43824 * 7 6 5 35 35 H 1.08997 * 109.47432 * 300.00031 * 11 9 8 36 36 H 1.09004 * 109.47247 * 60.00050 * 11 9 8 37 37 H 0.96997 * 120.00026 * 180.02562 * 16 15 13 38 38 H 1.09002 * 109.58928 * 173.39696 * 21 8 7 39 39 H 1.09004 * 109.58736 * 293.68090 * 21 8 7 40 40 H 1.09003 * 109.49563 * 61.43079 * 22 5 4 41 41 H 1.09001 * 109.51934 * 301.35541 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6736 1.1669 5 6 3.2807 -1.2976 0.9983 6 6 3.0847 -2.7205 0.4609 7 6 4.4553 -3.3717 0.2512 8 7 5.2140 -3.2985 1.5072 9 6 5.7449 -4.4098 2.0545 10 8 5.5981 -5.4835 1.5100 11 6 6.5210 -4.3183 3.3430 12 16 7.1000 -5.9664 3.8170 13 6 7.9502 -5.5744 5.3098 14 1 7.9862 -4.5529 5.6586 15 6 8.5736 -6.5786 6.0375 16 7 9.2083 -6.2858 7.1530 17 14 8.5107 -8.3455 5.4348 18 1 9.6733 -8.6080 4.5490 19 1 8.5568 -9.2674 6.5982 20 1 7.2521 -8.5660 4.6782 21 6 5.3834 -1.9907 2.1551 22 6 4.0038 -1.3527 2.3460 23 1 -0.3633 0.4453 -0.9262 24 1 -0.3634 -1.0247 0.0775 25 1 -0.3633 0.5795 0.8487 26 1 1.8933 -0.5139 -0.8899 27 1 3.1300 1.4425 0.0005 28 1 1.6768 1.9563 -0.8901 29 1 1.6767 1.9563 0.8899 30 1 3.8762 -0.7215 0.2899 31 1 2.5501 -2.6840 -0.4883 32 1 2.5105 -3.3046 1.1801 33 1 4.9954 -2.8419 -0.5334 34 1 4.3240 -4.4149 -0.0362 35 1 7.3771 -3.6577 3.2055 36 1 5.8773 -3.9202 4.1274 37 1 9.6443 -6.9874 7.6614 38 1 5.8623 -2.1228 3.1253 39 1 6.0013 -1.3490 1.5269 40 1 3.4208 -1.9495 3.0474 41 1 4.1212 -0.3424 2.7379 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000548770518.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:56 Heat of formation + Delta-G solvation = -117.342678 kcal Electronic energy + Delta-G solvation = -20758.749855 eV Core-core repulsion = 17570.572443 eV Total energy + Delta-G solvation = -3188.177413 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 287.134 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.29946 -39.72054 -37.65899 -34.67689 -34.23569 -32.85744 -31.97249 -30.37499 -28.09262 -27.86494 -25.73239 -24.35408 -22.28846 -21.96037 -20.46502 -19.57063 -18.44363 -17.70628 -17.19057 -16.89414 -16.73793 -16.06453 -15.95385 -15.57843 -15.05001 -14.98847 -14.85343 -14.65746 -14.32135 -13.89936 -13.52709 -13.50460 -13.32513 -13.06696 -13.02929 -12.98240 -12.87762 -12.65011 -12.57371 -12.25337 -11.88177 -11.83144 -11.76551 -11.39233 -11.17431 -10.95860 -10.53453 -10.39275 -9.79021 -9.01021 -8.51882 -6.22952 0.96724 1.30886 1.45366 1.49379 1.53661 2.04332 2.24759 2.64808 2.69975 2.86351 3.48746 3.70803 3.82079 3.97930 4.04794 4.10692 4.16426 4.19125 4.26620 4.32762 4.36602 4.38220 4.47859 4.65124 4.77642 4.77852 4.79299 4.93145 4.94253 4.98021 4.99762 5.10812 5.23296 5.33059 5.37137 5.50759 5.70651 6.11155 6.20701 6.39193 6.93358 7.05397 8.60488 Molecular weight = 287.13amu Principal moments of inertia in cm(-1) A = 0.039303 B = 0.003105 C = 0.002989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 712.234433 B = 9014.743805 C = 9365.636841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.072 3.928 3 C -0.173 4.173 4 O -0.395 6.395 5 C 0.095 3.905 6 C -0.147 4.147 7 C 0.114 3.886 8 N -0.607 5.607 9 C 0.534 3.466 10 O -0.563 6.563 11 C -0.107 4.107 12 S -0.178 6.178 13 C -0.527 4.527 14 H 0.063 0.937 15 C 0.046 3.954 16 N -0.916 5.916 17 Si 0.914 3.086 18 H -0.262 1.262 19 H -0.259 1.259 20 H -0.238 1.238 21 C 0.105 3.895 22 C -0.127 4.127 23 H 0.086 0.914 24 H 0.053 0.947 25 H 0.056 0.944 26 H 0.070 0.930 27 H 0.058 0.942 28 H 0.078 0.922 29 H 0.055 0.945 30 H 0.082 0.918 31 H 0.093 0.907 32 H 0.053 0.947 33 H 0.093 0.907 34 H 0.075 0.925 35 H 0.114 0.886 36 H 0.110 0.890 37 H 0.277 0.723 38 H 0.094 0.906 39 H 0.101 0.899 40 H 0.058 0.942 41 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.811 16.948 -17.207 28.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.015 3.985 3 C -0.230 4.230 4 O -0.315 6.315 5 C 0.037 3.963 6 C -0.186 4.186 7 C -0.008 4.008 8 N -0.341 5.341 9 C 0.322 3.678 10 O -0.442 6.442 11 C -0.258 4.258 12 S 0.048 5.952 13 C -0.674 4.674 14 H 0.082 0.918 15 C -0.160 4.160 16 N -0.554 5.554 17 Si 0.736 3.264 18 H -0.186 1.186 19 H -0.183 1.183 20 H -0.162 1.162 21 C -0.017 4.017 22 C -0.165 4.165 23 H 0.105 0.895 24 H 0.073 0.927 25 H 0.075 0.925 26 H 0.088 0.912 27 H 0.077 0.923 28 H 0.097 0.903 29 H 0.075 0.925 30 H 0.100 0.900 31 H 0.111 0.889 32 H 0.071 0.929 33 H 0.111 0.889 34 H 0.093 0.907 35 H 0.132 0.868 36 H 0.128 0.872 37 H 0.087 0.913 38 H 0.112 0.888 39 H 0.119 0.881 40 H 0.076 0.924 41 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -15.037 15.335 -17.682 27.819 hybrid contribution 0.548 0.418 0.922 1.151 sum -14.489 15.753 -16.759 27.184 Atomic orbital electron populations 1.21879 0.93315 1.02416 1.03054 1.22307 0.95397 0.92852 0.87984 1.22299 1.01638 0.96148 1.02925 1.87975 1.35658 1.70716 1.37124 1.22134 0.84856 0.91994 0.97315 1.22438 0.96542 0.96939 1.02660 1.21643 0.91523 1.02458 0.85207 1.48130 1.53473 1.07394 1.25152 1.20029 0.78765 0.83802 0.85223 1.90670 1.60572 1.29240 1.63720 1.23289 1.03187 1.01151 0.98129 1.84733 1.69589 1.11381 1.29457 1.22436 1.38577 0.97870 1.08539 0.91837 1.25553 0.93232 1.03115 0.94069 1.70014 1.34306 1.35611 1.15517 0.85875 0.81290 0.79794 0.79465 1.18623 1.18329 1.16197 1.22010 0.97434 0.82554 0.99744 1.21940 0.94927 1.02662 0.97001 0.89520 0.92738 0.92486 0.91233 0.92272 0.90264 0.92549 0.89975 0.88853 0.92854 0.88852 0.90691 0.86751 0.87188 0.91350 0.88819 0.88087 0.92359 0.88159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.72 9.56 71.98 0.69 -1.04 16 2 C 0.07 0.91 3.12 30.59 0.10 1.01 16 3 C -0.17 -1.78 9.48 71.98 0.68 -1.09 16 4 O -0.39 -7.12 9.64 -148.98 -1.44 -8.55 16 5 C 0.09 1.49 2.36 30.73 0.07 1.57 16 6 C -0.15 -2.63 5.68 30.78 0.17 -2.45 16 7 C 0.11 2.39 6.42 86.36 0.55 2.94 16 8 N -0.61 -15.41 2.97 -818.92 -2.43 -17.84 16 9 C 0.53 19.09 7.72 87.66 0.68 19.77 16 10 O -0.56 -24.69 15.27 -3.04 -0.05 -24.73 16 11 C -0.11 -4.11 4.50 71.24 0.32 -3.78 16 12 S -0.18 -9.12 18.55 -56.49 -1.05 -10.17 16 13 C -0.53 -30.76 10.04 67.95 0.68 -30.08 16 14 H 0.06 3.89 8.03 -2.91 -0.02 3.87 16 15 C 0.05 2.69 5.50 84.86 0.47 3.16 16 16 N -0.92 -55.93 13.97 21.65 0.30 -55.63 16 17 Si 0.91 45.30 27.74 68.60 1.90 47.20 16 18 H -0.26 -12.62 7.11 99.48 0.71 -11.92 16 19 H -0.26 -12.03 7.11 99.48 0.71 -11.33 16 20 H -0.24 -11.83 6.74 99.48 0.67 -11.16 16 21 C 0.10 1.90 6.34 86.36 0.55 2.45 16 22 C -0.13 -2.16 5.73 30.67 0.18 -1.98 16 23 H 0.09 0.65 8.14 -2.38 -0.02 0.63 16 24 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 25 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 26 H 0.07 0.73 7.47 -2.39 -0.02 0.71 16 27 H 0.06 0.58 7.81 -2.38 -0.02 0.56 16 28 H 0.08 0.57 8.14 -2.39 -0.02 0.55 16 29 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 30 H 0.08 0.98 7.49 -2.38 -0.02 0.96 16 31 H 0.09 1.31 7.79 -2.39 -0.02 1.29 16 32 H 0.05 1.21 8.14 -2.38 -0.02 1.20 16 33 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 34 H 0.07 1.95 7.00 -2.38 -0.02 1.93 16 35 H 0.11 3.99 7.94 -2.40 -0.02 3.97 16 36 H 0.11 3.95 7.69 -2.39 -0.02 3.93 16 37 H 0.28 15.63 8.31 -92.71 -0.77 14.86 16 38 H 0.09 1.79 5.93 -2.39 -0.01 1.78 16 39 H 0.10 1.31 8.14 -2.38 -0.02 1.29 16 40 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 41 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 Total: -1.00 -73.38 342.45 3.33 -70.05 By element: Atomic # 1 Polarization: 8.25 SS G_CDS: 0.95 Total: 9.21 kcal Atomic # 6 Polarization: -14.66 SS G_CDS: 5.14 Total: -9.52 kcal Atomic # 7 Polarization: -71.34 SS G_CDS: -2.13 Total: -73.47 kcal Atomic # 8 Polarization: -31.80 SS G_CDS: -1.48 Total: -33.29 kcal Atomic # 14 Polarization: 45.30 SS G_CDS: 1.90 Total: 47.20 kcal Atomic # 16 Polarization: -9.12 SS G_CDS: -1.05 Total: -10.17 kcal Total: -73.38 3.33 -70.05 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000548770518.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.293 kcal (2) G-P(sol) polarization free energy of solvation -73.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.050 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds