Wall clock time and date at job start Tue Mar 31 2020 06:13:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.47006 * 2 1 4 4 C 1.50702 * 109.47075 * 120.00214 * 2 1 3 5 5 H 1.08002 * 120.00367 * 120.00351 * 4 2 1 6 6 C 1.37872 * 119.99824 * 299.99674 * 4 2 1 7 7 N 1.31516 * 120.00220 * 0.02562 * 6 4 2 8 8 Si 1.86805 * 120.00034 * 180.02562 * 6 4 2 9 9 H 1.48504 * 109.46789 * 60.00433 * 8 6 4 10 10 H 1.48503 * 109.47166 * 180.02562 * 8 6 4 11 11 H 1.48498 * 109.47028 * 300.00509 * 8 6 4 12 12 N 1.46496 * 109.47338 * 240.00091 * 2 1 3 13 13 C 1.46505 * 119.99896 * 300.00058 * 12 2 1 14 14 C 1.34777 * 120.00271 * 119.99594 * 12 2 1 15 15 O 1.21278 * 119.99854 * 0.02562 * 14 12 2 16 16 C 1.50703 * 120.00161 * 180.02562 * 14 12 2 17 17 C 1.50701 * 109.47064 * 180.02562 * 16 14 12 18 18 C 1.33990 * 126.90864 * 265.02619 * 17 16 14 19 19 O 1.34446 * 110.15434 * 179.97438 * 18 17 16 20 20 C 1.34807 * 110.88893 * 359.97438 * 19 18 17 21 21 C 1.38947 * 133.49006 * 179.97438 * 20 19 18 22 22 C 1.37850 * 119.81644 * 180.02562 * 21 20 19 23 23 C 1.38748 * 120.68070 * 0.02562 * 22 21 20 24 24 C 1.36739 * 120.42036 * 359.97438 * 23 22 21 25 25 C 1.39408 * 119.71730 * 359.76487 * 24 23 22 26 26 H 1.08993 * 109.47110 * 60.00098 * 1 2 3 27 27 H 1.08998 * 109.47006 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47283 * 299.99941 * 1 2 3 29 29 H 0.97002 * 119.99999 * 179.97438 * 7 6 4 30 30 H 1.08999 * 109.47333 * 269.99341 * 13 12 2 31 31 H 1.08997 * 109.47024 * 30.00155 * 13 12 2 32 32 H 1.09000 * 109.46875 * 149.99915 * 13 12 2 33 33 H 1.09002 * 109.47152 * 60.00245 * 16 14 12 34 34 H 1.09001 * 109.46980 * 300.00345 * 16 14 12 35 35 H 1.08000 * 124.92364 * 359.95985 * 18 17 16 36 36 H 1.08002 * 120.09416 * 359.97438 * 21 20 19 37 37 H 1.07996 * 119.66031 * 179.97438 * 22 21 20 38 38 H 1.07998 * 119.78812 * 180.02562 * 23 22 21 39 39 H 1.07997 * 120.14070 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 1.2305 5 1 2.6533 -1.5885 1.1314 6 6 1.6993 -0.2394 2.4827 7 7 0.9428 0.8296 2.6034 8 14 2.3225 -1.1196 4.0079 9 1 3.8076 -1.1189 4.0077 10 1 1.8269 -0.4200 5.2205 11 1 1.8281 -2.5199 4.0081 12 7 2.0184 -0.6906 -1.1961 13 6 1.6645 -2.0932 -1.4280 14 6 2.7932 -0.0356 -2.0833 15 8 3.0865 1.1254 -1.8912 16 6 3.2951 -0.7458 -3.3141 17 6 4.1329 0.2012 -4.1340 18 6 3.7235 0.9487 -5.1680 19 8 4.7489 1.6707 -5.6524 20 6 5.8780 1.4290 -4.9566 21 6 7.1797 1.9057 -5.0506 22 6 8.1397 1.4557 -4.1696 23 6 7.8206 0.5293 -3.1873 24 6 6.5455 0.0477 -3.0778 25 6 5.5600 0.4952 -3.9564 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 0.7082 1.1608 3.4844 30 1 2.4158 -2.7377 -0.9717 31 1 0.6905 -2.3002 -0.9847 32 1 1.6239 -2.2852 -2.5002 33 1 2.4471 -1.0880 -3.9073 34 1 3.9005 -1.6024 -3.0177 35 1 2.7158 0.9682 -5.5561 36 1 7.4390 2.6261 -5.8124 37 1 9.1508 1.8276 -4.2452 38 1 8.5840 0.1869 -2.5044 39 1 6.3020 -0.6730 -2.3113 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000552143986.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:58 Heat of formation + Delta-G solvation = -4.116114 kcal Electronic energy + Delta-G solvation = -22349.242895 eV Core-core repulsion = 19030.531404 eV Total energy + Delta-G solvation = -3318.711492 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 287.131 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.33427 -39.00488 -37.76221 -35.38458 -33.72239 -32.79947 -30.57310 -30.02549 -29.30196 -27.37070 -26.06140 -25.19404 -23.24219 -22.21597 -21.61280 -19.90777 -18.25116 -17.26538 -16.88996 -16.62474 -16.19900 -15.79568 -15.64624 -15.14109 -14.77988 -14.22710 -14.02968 -13.70374 -13.20821 -12.82186 -12.66300 -12.49500 -12.34849 -12.20085 -11.92856 -11.62747 -11.49665 -11.37931 -11.05554 -10.82280 -10.77910 -10.68822 -10.25365 -10.15950 -9.92149 -9.17629 -8.91808 -8.54143 -8.41860 -8.01924 -7.57019 -6.06386 -4.14501 1.01366 1.45079 2.43073 2.90260 3.27777 3.33004 3.33850 3.42046 3.78130 4.06873 4.40796 4.55329 4.66900 4.96802 5.00701 5.15951 5.23503 5.30481 5.40741 5.47594 5.56304 5.58852 5.66741 5.79244 6.00259 6.07440 6.29067 6.30044 6.34390 6.50194 6.54159 6.71456 6.76437 6.82278 7.06249 7.26070 7.44899 7.53570 7.72325 8.02526 8.20802 8.54832 8.84637 9.08913 9.52107 10.98851 Molecular weight = 287.13amu Principal moments of inertia in cm(-1) A = 0.020427 B = 0.004278 C = 0.003854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1370.388454 B = 6544.008257 C = 7264.130077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.258 3.742 3 H 0.063 0.937 4 C -0.525 4.525 5 H 0.058 0.942 6 C 0.065 3.935 7 N -0.888 5.888 8 Si 0.898 3.102 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.277 1.277 12 N -0.595 5.595 13 C 0.086 3.914 14 C 0.502 3.498 15 O -0.543 6.543 16 C -0.071 4.071 17 C -0.146 4.146 18 C 0.009 3.991 19 O -0.195 6.195 20 C 0.049 3.951 21 C -0.111 4.111 22 C -0.098 4.098 23 C -0.139 4.139 24 C -0.063 4.063 25 C -0.110 4.110 26 H 0.011 0.989 27 H 0.030 0.970 28 H 0.093 0.907 29 H 0.264 0.736 30 H 0.048 0.952 31 H 0.073 0.927 32 H 0.052 0.948 33 H 0.098 0.902 34 H 0.098 0.902 35 H 0.206 0.794 36 H 0.129 0.871 37 H 0.131 0.869 38 H 0.127 0.873 39 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.696 -4.176 -15.009 17.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.158 3.842 3 H 0.080 0.920 4 C -0.564 4.564 5 H 0.076 0.924 6 C -0.138 4.138 7 N -0.526 5.526 8 Si 0.726 3.274 9 H -0.203 1.203 10 H -0.212 1.212 11 H -0.202 1.202 12 N -0.327 5.327 13 C -0.058 4.058 14 C 0.289 3.711 15 O -0.421 6.421 16 C -0.111 4.111 17 C -0.148 4.148 18 C -0.055 4.055 19 O -0.096 6.096 20 C 0.002 3.998 21 C -0.129 4.129 22 C -0.117 4.117 23 C -0.157 4.157 24 C -0.081 4.081 25 C -0.111 4.111 26 H 0.030 0.970 27 H 0.049 0.951 28 H 0.112 0.888 29 H 0.074 0.926 30 H 0.067 0.933 31 H 0.091 0.909 32 H 0.070 0.930 33 H 0.116 0.884 34 H 0.116 0.884 35 H 0.222 0.778 36 H 0.147 0.853 37 H 0.149 0.851 38 H 0.145 0.855 39 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 7.732 -3.257 -14.950 17.143 hybrid contribution 0.103 -0.682 1.126 1.321 sum 7.835 -3.939 -13.823 16.371 Atomic orbital electron populations 1.22093 0.98302 0.99302 1.00819 1.18920 0.90787 0.94526 0.79988 0.91965 1.21278 1.31824 1.12942 0.90327 0.92397 1.24892 0.94968 0.94973 0.98946 1.69870 1.36335 1.22612 1.23832 0.86562 0.79237 0.79564 0.82049 1.20276 1.21165 1.20239 1.48241 1.49184 1.11620 1.23655 1.21566 1.01670 0.83303 0.99272 1.20271 0.79365 0.87251 0.84244 1.90675 1.57726 1.17067 1.76648 1.20088 0.98911 0.97298 0.94854 1.20537 0.92521 1.03023 0.98672 1.23622 0.91714 0.93318 0.96875 1.83969 1.16114 1.57695 1.51851 1.19601 0.87959 0.98682 0.93563 1.19868 0.88235 1.02674 1.02145 1.20869 0.98673 0.97341 0.94770 1.20746 0.96496 0.98973 0.99497 1.20332 0.91707 0.99009 0.97042 1.19745 0.93648 0.99667 0.97997 0.97032 0.95116 0.88828 0.92648 0.93329 0.90855 0.92961 0.88378 0.88420 0.77792 0.85349 0.85070 0.85512 0.85663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.50 8.95 37.16 0.33 -3.17 16 2 C 0.26 6.61 2.64 -69.08 -0.18 6.43 16 3 H 0.06 1.87 6.90 -51.93 -0.36 1.51 16 4 C -0.52 -14.22 8.37 -34.44 -0.29 -14.51 16 5 H 0.06 1.54 7.65 -52.49 -0.40 1.14 16 6 C 0.06 1.77 5.30 -17.82 -0.09 1.67 16 7 N -0.89 -25.29 11.32 55.43 0.63 -24.66 16 8 Si 0.90 21.09 29.54 -169.99 -5.02 16.07 16 9 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 10 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 11 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 12 N -0.60 -12.52 2.75 -175.26 -0.48 -13.00 16 13 C 0.09 1.38 9.48 59.85 0.57 1.95 16 14 C 0.50 10.32 7.67 -10.98 -0.08 10.24 16 15 O -0.54 -13.71 15.36 5.56 0.09 -13.62 16 16 C -0.07 -1.05 4.80 -29.03 -0.14 -1.19 16 17 C -0.15 -2.28 4.85 -102.66 -0.50 -2.78 16 18 C 0.01 0.13 11.89 29.24 0.35 0.48 16 19 O -0.19 -2.94 10.58 3.92 0.04 -2.90 16 20 C 0.05 0.76 7.42 -38.47 -0.29 0.47 16 21 C -0.11 -1.40 10.07 -39.46 -0.40 -1.80 16 22 C -0.10 -1.12 10.01 -39.53 -0.40 -1.51 16 23 C -0.14 -1.73 9.98 -39.94 -0.40 -2.13 16 24 C -0.06 -0.94 10.05 -39.69 -0.40 -1.34 16 25 C -0.11 -1.79 6.38 -105.16 -0.67 -2.46 16 26 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 16 27 H 0.03 0.67 6.66 -51.93 -0.35 0.32 16 28 H 0.09 2.46 6.07 -51.93 -0.32 2.15 16 29 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 30 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 31 H 0.07 1.20 6.43 -51.93 -0.33 0.87 16 32 H 0.05 0.63 6.44 -51.93 -0.33 0.30 16 33 H 0.10 1.12 7.40 -51.93 -0.38 0.73 16 34 H 0.10 1.28 8.11 -51.93 -0.42 0.86 16 35 H 0.21 2.02 8.06 -52.49 -0.42 1.59 16 36 H 0.13 1.28 8.06 -52.49 -0.42 0.86 16 37 H 0.13 1.06 8.06 -52.49 -0.42 0.63 16 38 H 0.13 1.26 8.06 -52.49 -0.42 0.83 16 39 H 0.13 1.79 8.06 -52.49 -0.42 1.37 16 LS Contribution 329.27 15.07 4.96 4.96 Total: -1.00 -33.62 329.27 -7.36 -40.98 By element: Atomic # 1 Polarization: 6.80 SS G_CDS: -4.99 Total: 1.81 kcal Atomic # 6 Polarization: -7.05 SS G_CDS: -2.59 Total: -9.64 kcal Atomic # 7 Polarization: -37.80 SS G_CDS: 0.14 Total: -37.66 kcal Atomic # 8 Polarization: -16.65 SS G_CDS: 0.13 Total: -16.52 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -33.62 -7.36 -40.98 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000552143986.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.862 kcal (2) G-P(sol) polarization free energy of solvation -33.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.978 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds