Wall clock time and date at job start Tue Mar 31 2020 06:13:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.47006 * 2 1 4 4 C 1.50702 * 109.47075 * 120.00214 * 2 1 3 5 5 H 1.08002 * 120.00367 * 120.00351 * 4 2 1 6 6 C 1.37872 * 119.99824 * 299.99674 * 4 2 1 7 7 N 1.31516 * 120.00220 * 0.02562 * 6 4 2 8 8 Si 1.86805 * 120.00034 * 180.02562 * 6 4 2 9 9 H 1.48504 * 109.46789 * 60.00433 * 8 6 4 10 10 H 1.48503 * 109.47166 * 180.02562 * 8 6 4 11 11 H 1.48498 * 109.47028 * 300.00509 * 8 6 4 12 12 N 1.46496 * 109.47338 * 240.00091 * 2 1 3 13 13 C 1.46505 * 119.99896 * 300.00058 * 12 2 1 14 14 C 1.34777 * 120.00271 * 119.99594 * 12 2 1 15 15 O 1.21278 * 119.99854 * 0.02562 * 14 12 2 16 16 C 1.50703 * 120.00161 * 180.02562 * 14 12 2 17 17 C 1.50701 * 109.47064 * 180.02562 * 16 14 12 18 18 C 1.33990 * 126.90864 * 265.02619 * 17 16 14 19 19 O 1.34446 * 110.15434 * 179.97438 * 18 17 16 20 20 C 1.34807 * 110.88893 * 359.97438 * 19 18 17 21 21 C 1.38947 * 133.49006 * 179.97438 * 20 19 18 22 22 C 1.37850 * 119.81644 * 180.02562 * 21 20 19 23 23 C 1.38748 * 120.68070 * 0.02562 * 22 21 20 24 24 C 1.36739 * 120.42036 * 359.97438 * 23 22 21 25 25 C 1.39408 * 119.71730 * 359.76487 * 24 23 22 26 26 H 1.08993 * 109.47110 * 60.00098 * 1 2 3 27 27 H 1.08998 * 109.47006 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47283 * 299.99941 * 1 2 3 29 29 H 0.97002 * 119.99999 * 179.97438 * 7 6 4 30 30 H 1.08999 * 109.47333 * 269.99341 * 13 12 2 31 31 H 1.08997 * 109.47024 * 30.00155 * 13 12 2 32 32 H 1.09000 * 109.46875 * 149.99915 * 13 12 2 33 33 H 1.09002 * 109.47152 * 60.00245 * 16 14 12 34 34 H 1.09001 * 109.46980 * 300.00345 * 16 14 12 35 35 H 1.08000 * 124.92364 * 359.95985 * 18 17 16 36 36 H 1.08002 * 120.09416 * 359.97438 * 21 20 19 37 37 H 1.07996 * 119.66031 * 179.97438 * 22 21 20 38 38 H 1.07998 * 119.78812 * 180.02562 * 23 22 21 39 39 H 1.07997 * 120.14070 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 1.2305 5 1 2.6533 -1.5885 1.1314 6 6 1.6993 -0.2394 2.4827 7 7 0.9428 0.8296 2.6034 8 14 2.3225 -1.1196 4.0079 9 1 3.8076 -1.1189 4.0077 10 1 1.8269 -0.4200 5.2205 11 1 1.8281 -2.5199 4.0081 12 7 2.0184 -0.6906 -1.1961 13 6 1.6645 -2.0932 -1.4280 14 6 2.7932 -0.0356 -2.0833 15 8 3.0865 1.1254 -1.8912 16 6 3.2951 -0.7458 -3.3141 17 6 4.1329 0.2012 -4.1340 18 6 3.7235 0.9487 -5.1680 19 8 4.7489 1.6707 -5.6524 20 6 5.8780 1.4290 -4.9566 21 6 7.1797 1.9057 -5.0506 22 6 8.1397 1.4557 -4.1696 23 6 7.8206 0.5293 -3.1873 24 6 6.5455 0.0477 -3.0778 25 6 5.5600 0.4952 -3.9564 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 0.7082 1.1608 3.4844 30 1 2.4158 -2.7377 -0.9717 31 1 0.6905 -2.3002 -0.9847 32 1 1.6239 -2.2852 -2.5002 33 1 2.4471 -1.0880 -3.9073 34 1 3.9005 -1.6024 -3.0177 35 1 2.7158 0.9682 -5.5561 36 1 7.4390 2.6261 -5.8124 37 1 9.1508 1.8276 -4.2452 38 1 8.5840 0.1869 -2.5044 39 1 6.3020 -0.6730 -2.3113 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000552143986.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:58 Heat of formation + Delta-G solvation = -24.502695 kcal Electronic energy + Delta-G solvation = -22350.126924 eV Core-core repulsion = 19030.531404 eV Total energy + Delta-G solvation = -3319.595520 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 287.131 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -43.39286 -40.63418 -38.75278 -37.15919 -35.03354 -34.61263 -31.86839 -31.34045 -30.60521 -28.62409 -27.53500 -27.25295 -24.26944 -23.34276 -23.19302 -21.22902 -19.79659 -18.52679 -18.24197 -18.09793 -17.73250 -17.11742 -16.84607 -16.63664 -16.25651 -15.96602 -15.07189 -14.72672 -14.70676 -14.36004 -14.27905 -13.75446 -13.68318 -13.43241 -13.21201 -13.03350 -12.95131 -12.88568 -12.68701 -12.62770 -12.46305 -12.16730 -12.12412 -11.79679 -11.20184 -11.06297 -10.60064 -10.43468 -9.58036 -9.29418 -9.07763 -8.14354 -6.31285 -0.00014 0.41397 1.33140 1.40565 1.42963 1.50375 1.85642 1.89567 2.36043 2.56430 2.80510 3.13230 3.53458 3.62193 3.89289 3.96561 4.13654 4.17893 4.42900 4.45976 4.48333 4.58093 4.62688 4.68421 4.74999 4.83641 4.89373 5.00426 5.06081 5.10369 5.28648 5.36193 5.45143 5.49431 5.53503 5.65260 5.68656 5.73083 6.05634 6.17102 6.21005 6.77081 6.88003 7.33985 7.53121 8.89562 Molecular weight = 287.13amu Principal moments of inertia in cm(-1) A = 0.020427 B = 0.004278 C = 0.003854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1370.388454 B = 6544.008257 C = 7264.130077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.261 3.739 3 H 0.004 0.996 4 C -0.538 4.538 5 H 0.060 0.940 6 C 0.014 3.986 7 N -0.919 5.919 8 Si 0.964 3.036 9 H -0.278 1.278 10 H -0.284 1.284 11 H -0.261 1.261 12 N -0.602 5.602 13 C 0.080 3.920 14 C 0.494 3.506 15 O -0.602 6.602 16 C -0.053 4.053 17 C -0.179 4.179 18 C 0.016 3.984 19 O -0.203 6.203 20 C 0.020 3.980 21 C -0.115 4.115 22 C -0.094 4.094 23 C -0.137 4.137 24 C -0.094 4.094 25 C -0.140 4.140 26 H 0.020 0.980 27 H 0.050 0.950 28 H 0.065 0.935 29 H 0.264 0.736 30 H 0.054 0.946 31 H 0.070 0.930 32 H 0.101 0.899 33 H 0.140 0.860 34 H 0.116 0.884 35 H 0.242 0.758 36 H 0.154 0.846 37 H 0.171 0.829 38 H 0.152 0.848 39 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.620 -5.897 -16.155 19.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.159 3.841 3 H 0.022 0.978 4 C -0.576 4.576 5 H 0.078 0.922 6 C -0.186 4.186 7 N -0.558 5.558 8 Si 0.789 3.211 9 H -0.204 1.204 10 H -0.209 1.209 11 H -0.185 1.185 12 N -0.333 5.333 13 C -0.062 4.062 14 C 0.283 3.717 15 O -0.484 6.484 16 C -0.092 4.092 17 C -0.180 4.180 18 C -0.048 4.048 19 O -0.105 6.105 20 C -0.027 4.027 21 C -0.133 4.133 22 C -0.112 4.112 23 C -0.155 4.155 24 C -0.112 4.112 25 C -0.141 4.141 26 H 0.039 0.961 27 H 0.069 0.931 28 H 0.084 0.916 29 H 0.073 0.927 30 H 0.072 0.928 31 H 0.088 0.912 32 H 0.119 0.881 33 H 0.158 0.842 34 H 0.134 0.866 35 H 0.258 0.742 36 H 0.172 0.828 37 H 0.188 0.812 38 H 0.170 0.830 39 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 8.652 -5.030 -16.121 18.975 hybrid contribution -0.120 -0.090 1.449 1.456 sum 8.532 -5.120 -14.672 17.728 Atomic orbital electron populations 1.21867 0.97099 1.00181 0.99892 1.18493 0.91649 0.92040 0.81945 0.97838 1.21556 1.31847 1.13000 0.91219 0.92195 1.25748 0.95102 0.95640 1.02061 1.70024 1.37369 1.23957 1.24420 0.85526 0.78342 0.79083 0.78163 1.20389 1.20938 1.18519 1.48245 1.49206 1.13483 1.22335 1.21862 1.01488 0.80186 1.02632 1.21323 0.78176 0.86767 0.85415 1.90641 1.59663 1.19942 1.78140 1.20037 1.00326 0.96749 0.92137 1.20784 0.92720 1.04644 0.99899 1.24346 0.92613 0.91718 0.96155 1.83955 1.16461 1.57964 1.52110 1.20087 0.88986 0.99552 0.94074 1.20355 0.87392 1.02694 1.02831 1.21356 1.00172 0.96200 0.93433 1.21146 0.96074 0.98430 0.99846 1.20519 0.92911 1.00228 0.97555 1.20127 0.94523 1.00589 0.98853 0.96058 0.93148 0.91610 0.92700 0.92767 0.91172 0.88078 0.84178 0.86621 0.74238 0.82801 0.81163 0.83026 0.86283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.38 8.95 71.98 0.64 -5.74 16 2 C 0.26 13.77 2.64 44.25 0.12 13.88 16 3 H 0.00 0.23 6.90 -2.39 -0.02 0.22 16 4 C -0.54 -29.55 8.37 25.60 0.21 -29.34 16 5 H 0.06 3.18 7.65 -2.91 -0.02 3.16 16 6 C 0.01 0.77 5.30 84.65 0.45 1.22 16 7 N -0.92 -53.77 11.32 21.45 0.24 -53.53 16 8 Si 0.96 43.39 29.54 68.60 2.03 45.41 16 9 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 10 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 11 H -0.26 -10.99 7.11 99.48 0.71 -10.29 16 12 N -0.60 -25.17 2.75 -826.79 -2.28 -27.45 16 13 C 0.08 2.39 9.48 127.77 1.21 3.60 16 14 C 0.49 20.38 7.67 87.66 0.67 21.05 16 15 O -0.60 -31.73 15.36 -3.02 -0.05 -31.78 16 16 C -0.05 -1.47 4.80 29.10 0.14 -1.33 16 17 C -0.18 -5.48 4.85 -18.60 -0.09 -5.57 16 18 C 0.02 0.43 11.89 66.85 0.79 1.22 16 19 O -0.20 -6.05 10.58 -8.88 -0.09 -6.14 16 20 C 0.02 0.60 7.42 22.99 0.17 0.77 16 21 C -0.11 -2.73 10.07 22.35 0.23 -2.50 16 22 C -0.09 -1.92 10.01 22.30 0.22 -1.70 16 23 C -0.14 -3.25 9.98 22.04 0.22 -3.03 16 24 C -0.09 -2.83 10.05 22.20 0.22 -2.61 16 25 C -0.14 -4.60 6.38 -20.21 -0.13 -4.72 16 26 H 0.02 0.93 8.14 -2.39 -0.02 0.91 16 27 H 0.05 2.18 6.66 -2.39 -0.02 2.17 16 28 H 0.07 3.56 6.07 -2.39 -0.01 3.55 16 29 H 0.26 14.67 8.31 -92.71 -0.77 13.90 16 30 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 31 H 0.07 2.13 6.43 -2.39 -0.02 2.12 16 32 H 0.10 2.01 6.44 -2.39 -0.02 1.99 16 33 H 0.14 2.63 7.40 -2.39 -0.02 2.61 16 34 H 0.12 2.78 8.11 -2.39 -0.02 2.76 16 35 H 0.24 4.17 8.06 -2.91 -0.02 4.15 16 36 H 0.15 2.73 8.06 -2.91 -0.02 2.71 16 37 H 0.17 2.08 8.06 -2.91 -0.02 2.06 16 38 H 0.15 2.70 8.06 -2.91 -0.02 2.67 16 39 H 0.12 3.54 8.06 -2.91 -0.02 3.51 16 Total: -1.00 -78.20 329.27 6.00 -72.21 By element: Atomic # 1 Polarization: 15.01 SS G_CDS: 1.06 Total: 16.07 kcal Atomic # 6 Polarization: -19.88 SS G_CDS: 5.09 Total: -14.80 kcal Atomic # 7 Polarization: -78.94 SS G_CDS: -2.03 Total: -80.98 kcal Atomic # 8 Polarization: -37.78 SS G_CDS: -0.14 Total: -37.92 kcal Atomic # 14 Polarization: 43.39 SS G_CDS: 2.03 Total: 45.41 kcal Total: -78.20 6.00 -72.21 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000552143986.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.706 kcal (2) G-P(sol) polarization free energy of solvation -78.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.209 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds