Wall clock time and date at job start Tue Mar 31 2020 06:28:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 O 1.20762 * 119.99882 * 2 1 4 4 C 1.50698 * 120.00174 * 179.97438 * 2 1 3 5 5 C 1.50706 * 109.46986 * 179.97438 * 4 2 1 6 6 C 1.38264 * 119.94244 * 90.00315 * 5 4 2 7 7 C 1.38145 * 120.05437 * 179.97438 * 6 5 4 8 8 C 1.38734 * 119.94237 * 0.25588 * 7 6 5 9 9 O 1.35904 * 120.05067 * 179.74240 * 8 7 6 10 10 C 1.42903 * 116.99686 * 180.02562 * 9 8 7 11 11 C 1.52991 * 109.47089 * 180.02562 * 10 9 8 12 12 H 1.09003 * 109.47206 * 304.99831 * 11 10 9 13 13 C 1.47205 * 109.47209 * 64.99771 * 11 10 9 14 14 N 9.73610 * 168.63169 * 178.00343 * 2 1 3 15 15 C 1.52999 * 109.47437 * 185.00153 * 11 10 9 16 16 C 1.50696 * 109.47400 * 174.99967 * 15 11 10 17 17 H 1.08000 * 120.00225 * 0.02562 * 16 15 11 18 18 C 1.37881 * 119.99852 * 179.97438 * 16 15 11 19 19 N 1.31513 * 120.00088 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 119.99817 * 180.02562 * 18 16 15 21 21 H 1.48496 * 109.47558 * 59.99992 * 20 18 16 22 22 H 1.48502 * 109.46816 * 180.02562 * 20 18 16 23 23 H 1.48498 * 109.46981 * 300.00038 * 20 18 16 24 24 C 1.38734 * 119.88948 * 359.51611 * 8 7 6 25 25 C 1.38137 * 119.94186 * 0.45767 * 24 8 7 26 26 H 1.08994 * 109.47316 * 269.99658 * 1 2 3 27 27 H 1.08994 * 109.47216 * 30.00351 * 1 2 3 28 28 H 1.09007 * 109.47146 * 150.00055 * 1 2 3 29 29 H 1.09006 * 109.47186 * 60.00291 * 4 2 1 30 30 H 1.08995 * 109.47108 * 300.00452 * 4 2 1 31 31 H 1.07999 * 119.97245 * 359.97438 * 6 5 4 32 32 H 1.08002 * 120.02435 * 179.97438 * 7 6 5 33 33 H 1.09002 * 109.47195 * 300.00308 * 10 9 8 34 34 H 1.09000 * 109.46994 * 59.99845 * 10 9 8 35 35 H 1.09009 * 109.46692 * 294.99922 * 15 11 10 36 36 H 1.09003 * 109.47485 * 54.99513 * 15 11 10 37 37 H 0.96998 * 120.00079 * 179.97438 * 19 18 16 38 38 H 1.08000 * 120.02374 * 180.20633 * 24 8 7 39 39 H 1.08007 * 119.97511 * 179.76987 * 25 24 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1107 1.0458 0.0000 4 6 2.2605 -1.3051 0.0006 5 6 3.7422 -1.0296 -0.0002 6 6 4.4211 -0.9027 1.1976 7 6 5.7794 -0.6507 1.1996 8 6 6.4611 -0.5197 -0.0016 9 8 7.7964 -0.2666 -0.0022 10 6 8.4328 -0.1435 -1.2757 11 6 9.9232 0.1379 -1.0760 12 1 10.0454 1.0165 -0.4424 13 6 10.5600 -1.0231 -0.4331 14 7 11.0520 -1.9180 0.0669 15 6 10.5805 0.3932 -2.4338 16 6 12.0196 0.7906 -2.2286 17 1 12.4250 0.8544 -1.2296 18 6 12.8190 1.0718 -3.3162 19 7 12.3255 0.9937 -4.5328 20 14 14.6030 1.5638 -3.0618 21 1 15.3229 0.4705 -2.3607 22 1 15.2408 1.8116 -4.3798 23 1 14.6633 2.8010 -2.2428 24 6 5.7784 -0.6522 -1.2020 25 6 4.4203 -0.9047 -1.1986 26 1 -0.3633 -0.0001 1.0276 27 1 -0.3633 0.8899 -0.5139 28 1 -0.3634 -0.8900 -0.5139 29 1 1.9972 -1.8771 -0.8892 30 1 1.9971 -1.8763 0.8907 31 1 3.8892 -1.0007 2.1323 32 1 6.3092 -0.5513 2.1354 33 1 8.3102 -1.0715 -1.8343 34 1 7.9788 0.6773 -1.8309 35 1 10.5366 -0.5150 -3.0352 36 1 10.0518 1.1955 -2.9484 37 1 12.8877 1.1919 -5.2979 38 1 6.3076 -0.5539 -2.1383 39 1 3.8876 -1.0042 -2.1329 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000581828412.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:28:25 Heat of formation + Delta-G solvation = -41.915037 kcal Electronic energy + Delta-G solvation = -20937.703730 eV Core-core repulsion = 17617.353154 eV Total energy + Delta-G solvation = -3320.350576 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 287.131 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.35813 -39.49945 -37.69078 -36.14118 -33.85107 -32.68933 -31.87720 -31.02568 -30.38641 -27.59463 -26.41876 -24.22670 -22.56282 -21.77933 -21.51970 -19.83107 -18.08588 -17.20328 -16.62712 -16.05903 -16.05506 -15.96795 -15.32330 -15.03631 -14.69489 -14.55717 -14.09399 -13.80383 -13.47901 -13.17443 -12.87675 -12.80508 -12.64200 -12.41688 -12.20104 -12.06522 -11.98463 -11.63013 -11.40965 -11.15483 -11.01125 -10.73433 -10.64294 -10.63548 -10.29210 -9.93393 -9.72457 -9.35728 -9.00002 -8.50667 -8.03953 -6.15255 -4.19069 1.34794 1.38973 1.70767 3.26739 3.29527 3.33368 3.38409 3.58601 3.60395 3.65048 4.01060 4.37407 4.48787 4.64648 4.68214 4.74023 4.86869 4.94263 5.07315 5.13492 5.20929 5.23033 5.30031 5.33769 5.44813 5.50964 5.59986 5.67053 5.76554 5.99201 6.16585 6.26290 6.33040 6.40409 6.50690 6.78335 7.26467 7.30772 7.39942 7.52965 7.79389 8.14294 8.39364 8.84638 9.46797 10.95652 Molecular weight = 287.13amu Principal moments of inertia in cm(-1) A = 0.032119 B = 0.002686 C = 0.002564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 871.541635 B =10422.396962 C =10916.864783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.349 3.651 3 O -0.445 6.445 4 C -0.125 4.125 5 C -0.127 4.127 6 C -0.071 4.071 7 C -0.154 4.154 8 C 0.142 3.858 9 O -0.315 6.315 10 C 0.065 3.935 11 C 0.012 3.988 12 H 0.114 0.886 13 C 0.244 3.756 14 N -0.468 5.468 15 C 0.034 3.966 16 C -0.529 4.529 17 H 0.058 0.942 18 C 0.064 3.936 19 N -0.891 5.891 20 Si 0.895 3.105 21 H -0.276 1.276 22 H -0.286 1.286 23 H -0.274 1.274 24 C -0.206 4.206 25 C -0.067 4.067 26 H 0.094 0.906 27 H 0.083 0.917 28 H 0.084 0.916 29 H 0.104 0.896 30 H 0.104 0.896 31 H 0.123 0.877 32 H 0.130 0.870 33 H 0.068 0.932 34 H 0.083 0.917 35 H 0.029 0.971 36 H 0.042 0.958 37 H 0.264 0.736 38 H 0.133 0.867 39 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.720 -3.471 7.057 25.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.262 4.262 2 C 0.223 3.777 3 O -0.317 6.317 4 C -0.162 4.162 5 C -0.127 4.127 6 C -0.089 4.089 7 C -0.173 4.173 8 C 0.096 3.904 9 O -0.228 6.228 10 C -0.011 4.011 11 C -0.010 4.010 12 H 0.131 0.869 13 C -0.073 4.073 14 N -0.145 5.145 15 C -0.004 4.004 16 C -0.567 4.567 17 H 0.077 0.923 18 C -0.139 4.139 19 N -0.529 5.529 20 Si 0.722 3.278 21 H -0.202 1.202 22 H -0.211 1.211 23 H -0.200 1.200 24 C -0.225 4.225 25 C -0.085 4.085 26 H 0.112 0.888 27 H 0.102 0.898 28 H 0.103 0.897 29 H 0.122 0.878 30 H 0.122 0.878 31 H 0.141 0.859 32 H 0.147 0.853 33 H 0.086 0.914 34 H 0.101 0.899 35 H 0.047 0.953 36 H 0.061 0.939 37 H 0.074 0.926 38 H 0.151 0.849 39 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -23.455 -4.207 7.774 25.065 hybrid contribution 0.751 0.515 -0.438 1.010 sum -22.704 -3.692 7.336 24.144 Atomic orbital electron populations 1.22302 0.94517 1.04745 1.04586 1.24652 0.91643 0.90372 0.71007 1.90467 1.71866 1.34945 1.34434 1.21088 0.92452 0.97558 1.05149 1.19249 0.94176 1.05735 0.93561 1.20695 0.93214 0.97677 0.97280 1.20399 0.94085 1.06265 0.96510 1.19069 0.83218 0.94138 0.94024 1.86124 1.18378 1.85383 1.32913 1.23079 0.92215 1.02333 0.83441 1.19302 0.89197 0.91036 1.01438 0.86858 1.28964 0.92464 0.93906 0.91970 1.81050 1.10105 1.12068 1.11247 1.19171 0.95701 0.98573 0.86948 1.21042 0.95110 1.47394 0.93147 0.92331 1.24948 0.98765 0.95101 0.95081 1.69920 1.36609 1.48465 0.97923 0.86602 0.84561 0.79235 0.77396 1.20177 1.21133 1.19955 1.21314 0.95688 1.07942 0.97568 1.20725 0.93546 0.97023 0.97244 0.88779 0.89771 0.89718 0.87756 0.87763 0.85924 0.85252 0.91395 0.89885 0.95263 0.93943 0.92609 0.84918 0.86140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -0.87 10.25 36.00 0.37 -0.50 16 2 C 0.35 2.76 7.26 -29.04 -0.21 2.55 16 3 O -0.44 -5.70 16.77 6.00 0.10 -5.60 16 4 C -0.13 -0.82 5.75 -29.03 -0.17 -0.99 16 5 C -0.13 -1.34 4.38 -104.60 -0.46 -1.79 16 6 C -0.07 -0.79 9.69 -39.61 -0.38 -1.17 16 7 C -0.15 -2.02 9.99 -39.43 -0.39 -2.42 16 8 C 0.14 2.07 6.69 -39.22 -0.26 1.81 16 9 O -0.31 -5.07 9.87 -19.44 -0.19 -5.27 16 10 C 0.07 1.01 4.09 37.15 0.15 1.17 16 11 C 0.01 0.22 2.45 -93.41 -0.23 -0.01 16 12 H 0.11 2.00 8.14 -51.93 -0.42 1.58 16 13 C 0.24 5.17 13.71 -20.73 -0.28 4.89 16 14 N -0.47 -10.71 18.54 42.19 0.78 -9.93 16 15 C 0.03 0.78 4.42 -27.89 -0.12 0.65 16 16 C -0.53 -13.94 8.60 -34.44 -0.30 -14.24 16 17 H 0.06 1.54 7.59 -52.49 -0.40 1.14 16 18 C 0.06 1.73 5.46 -17.82 -0.10 1.64 16 19 N -0.89 -25.19 13.29 55.43 0.74 -24.45 16 20 Si 0.89 21.19 29.54 -169.99 -5.02 16.17 16 21 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 22 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 23 H -0.27 -6.35 7.11 56.52 0.40 -5.94 16 24 C -0.21 -2.71 9.04 -39.44 -0.36 -3.07 16 25 C -0.07 -0.77 9.69 -39.61 -0.38 -1.15 16 26 H 0.09 0.29 8.14 -51.93 -0.42 -0.13 16 27 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 28 H 0.08 0.17 8.12 -51.92 -0.42 -0.25 16 29 H 0.10 0.47 8.08 -51.93 -0.42 0.05 16 30 H 0.10 0.45 8.08 -51.93 -0.42 0.03 16 31 H 0.12 1.05 8.06 -52.49 -0.42 0.62 16 32 H 0.13 1.57 8.06 -52.49 -0.42 1.15 16 33 H 0.07 1.01 7.65 -51.93 -0.40 0.62 16 34 H 0.08 1.14 7.67 -51.93 -0.40 0.74 16 35 H 0.03 0.71 8.14 -51.92 -0.42 0.29 16 36 H 0.04 0.96 8.14 -51.93 -0.42 0.54 16 37 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 38 H 0.13 1.60 6.30 -52.49 -0.33 1.27 16 39 H 0.12 1.10 8.06 -52.48 -0.42 0.68 16 LS Contribution 347.51 15.07 5.24 5.24 Total: -1.00 -33.05 347.51 -6.78 -39.83 By element: Atomic # 1 Polarization: 1.95 SS G_CDS: -5.30 Total: -3.35 kcal Atomic # 6 Polarization: -9.51 SS G_CDS: -3.12 Total: -12.64 kcal Atomic # 7 Polarization: -35.90 SS G_CDS: 1.52 Total: -34.38 kcal Atomic # 8 Polarization: -10.78 SS G_CDS: -0.09 Total: -10.87 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -33.05 -6.78 -39.83 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000581828412.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.082 kcal (2) G-P(sol) polarization free energy of solvation -33.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.833 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds