Wall clock time and date at job start Tue Mar 31 2020 06:28:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 O 1.20762 * 119.99882 * 2 1 4 4 C 1.50698 * 120.00174 * 179.97438 * 2 1 3 5 5 C 1.50706 * 109.46986 * 179.97438 * 4 2 1 6 6 C 1.38264 * 119.94244 * 90.00315 * 5 4 2 7 7 C 1.38145 * 120.05437 * 179.97438 * 6 5 4 8 8 C 1.38734 * 119.94237 * 0.25588 * 7 6 5 9 9 O 1.35904 * 120.05067 * 179.74240 * 8 7 6 10 10 C 1.42903 * 116.99686 * 180.02562 * 9 8 7 11 11 C 1.52991 * 109.47089 * 180.02562 * 10 9 8 12 12 H 1.09003 * 109.47206 * 304.99831 * 11 10 9 13 13 C 1.47205 * 109.47209 * 64.99771 * 11 10 9 14 14 N 9.73610 * 168.63169 * 178.00343 * 2 1 3 15 15 C 1.52999 * 109.47437 * 185.00153 * 11 10 9 16 16 C 1.50696 * 109.47400 * 174.99967 * 15 11 10 17 17 H 1.08000 * 120.00225 * 0.02562 * 16 15 11 18 18 C 1.37881 * 119.99852 * 179.97438 * 16 15 11 19 19 N 1.31513 * 120.00088 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 119.99817 * 180.02562 * 18 16 15 21 21 H 1.48496 * 109.47558 * 59.99992 * 20 18 16 22 22 H 1.48502 * 109.46816 * 180.02562 * 20 18 16 23 23 H 1.48498 * 109.46981 * 300.00038 * 20 18 16 24 24 C 1.38734 * 119.88948 * 359.51611 * 8 7 6 25 25 C 1.38137 * 119.94186 * 0.45767 * 24 8 7 26 26 H 1.08994 * 109.47316 * 269.99658 * 1 2 3 27 27 H 1.08994 * 109.47216 * 30.00351 * 1 2 3 28 28 H 1.09007 * 109.47146 * 150.00055 * 1 2 3 29 29 H 1.09006 * 109.47186 * 60.00291 * 4 2 1 30 30 H 1.08995 * 109.47108 * 300.00452 * 4 2 1 31 31 H 1.07999 * 119.97245 * 359.97438 * 6 5 4 32 32 H 1.08002 * 120.02435 * 179.97438 * 7 6 5 33 33 H 1.09002 * 109.47195 * 300.00308 * 10 9 8 34 34 H 1.09000 * 109.46994 * 59.99845 * 10 9 8 35 35 H 1.09009 * 109.46692 * 294.99922 * 15 11 10 36 36 H 1.09003 * 109.47485 * 54.99513 * 15 11 10 37 37 H 0.96998 * 120.00079 * 179.97438 * 19 18 16 38 38 H 1.08000 * 120.02374 * 180.20633 * 24 8 7 39 39 H 1.08007 * 119.97511 * 179.76987 * 25 24 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1107 1.0458 0.0000 4 6 2.2605 -1.3051 0.0006 5 6 3.7422 -1.0296 -0.0002 6 6 4.4211 -0.9027 1.1976 7 6 5.7794 -0.6507 1.1996 8 6 6.4611 -0.5197 -0.0016 9 8 7.7964 -0.2666 -0.0022 10 6 8.4328 -0.1435 -1.2757 11 6 9.9232 0.1379 -1.0760 12 1 10.0454 1.0165 -0.4424 13 6 10.5600 -1.0231 -0.4331 14 7 11.0520 -1.9180 0.0669 15 6 10.5805 0.3932 -2.4338 16 6 12.0196 0.7906 -2.2286 17 1 12.4250 0.8544 -1.2296 18 6 12.8190 1.0718 -3.3162 19 7 12.3255 0.9937 -4.5328 20 14 14.6030 1.5638 -3.0618 21 1 15.3229 0.4705 -2.3607 22 1 15.2408 1.8116 -4.3798 23 1 14.6633 2.8010 -2.2428 24 6 5.7784 -0.6522 -1.2020 25 6 4.4203 -0.9047 -1.1986 26 1 -0.3633 -0.0001 1.0276 27 1 -0.3633 0.8899 -0.5139 28 1 -0.3634 -0.8900 -0.5139 29 1 1.9972 -1.8771 -0.8892 30 1 1.9971 -1.8763 0.8907 31 1 3.8892 -1.0007 2.1323 32 1 6.3092 -0.5513 2.1354 33 1 8.3102 -1.0715 -1.8343 34 1 7.9788 0.6773 -1.8309 35 1 10.5366 -0.5150 -3.0352 36 1 10.0518 1.1955 -2.9484 37 1 12.8877 1.1919 -5.2979 38 1 6.3076 -0.5539 -2.1383 39 1 3.8876 -1.0042 -2.1329 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000581828412.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:28:25 Heat of formation + Delta-G solvation = -60.371578 kcal Electronic energy + Delta-G solvation = -20938.504065 eV Core-core repulsion = 17617.353154 eV Total energy + Delta-G solvation = -3321.150912 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 287.131 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.28266 -40.34010 -38.81052 -37.67047 -35.67705 -33.99143 -33.14617 -31.95301 -30.98002 -29.12789 -27.33499 -25.67963 -23.93930 -23.22020 -22.44436 -20.43733 -19.20509 -18.74801 -18.41804 -17.13316 -16.80000 -16.66057 -16.57584 -16.31844 -15.96862 -15.50159 -15.17221 -14.94153 -14.76815 -14.34616 -14.31114 -14.02656 -13.81144 -13.52237 -13.21277 -13.08971 -13.01866 -12.90052 -12.70071 -12.52205 -12.48283 -12.38945 -12.18431 -11.78609 -11.69029 -11.55833 -11.29216 -10.58556 -10.57521 -9.91688 -9.00143 -8.22793 -6.31257 0.43101 0.46609 1.14740 1.40968 1.42151 1.49423 1.81305 1.91254 2.21234 2.42342 2.75656 3.07276 3.14932 3.43993 3.79569 3.83567 3.98064 4.02514 4.13748 4.34983 4.36388 4.43912 4.47483 4.49938 4.68784 4.71605 4.73344 4.83480 4.84494 4.89407 5.12068 5.25948 5.38072 5.39476 5.44188 5.52488 5.64890 5.73712 5.88843 6.13075 6.45854 6.67513 6.72460 6.81593 7.37312 8.88056 Molecular weight = 287.13amu Principal moments of inertia in cm(-1) A = 0.032119 B = 0.002686 C = 0.002564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 871.541635 B =10422.396962 C =10916.864783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.353 3.647 3 O -0.506 6.506 4 C -0.125 4.125 5 C -0.125 4.125 6 C -0.076 4.076 7 C -0.170 4.170 8 C 0.109 3.891 9 O -0.332 6.332 10 C 0.075 3.925 11 C 0.022 3.978 12 H 0.128 0.872 13 C 0.253 3.747 14 N -0.500 5.500 15 C 0.041 3.959 16 C -0.543 4.543 17 H 0.055 0.945 18 C 0.014 3.986 19 N -0.921 5.921 20 Si 0.950 3.050 21 H -0.281 1.281 22 H -0.281 1.281 23 H -0.264 1.264 24 C -0.218 4.218 25 C -0.078 4.078 26 H 0.110 0.890 27 H 0.075 0.925 28 H 0.114 0.886 29 H 0.133 0.867 30 H 0.135 0.865 31 H 0.149 0.851 32 H 0.130 0.870 33 H 0.071 0.929 34 H 0.102 0.898 35 H 0.010 0.990 36 H 0.043 0.957 37 H 0.266 0.734 38 H 0.137 0.863 39 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.990 -3.910 7.527 28.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.256 4.256 2 C 0.232 3.768 3 O -0.382 6.382 4 C -0.162 4.162 5 C -0.125 4.125 6 C -0.094 4.094 7 C -0.189 4.189 8 C 0.064 3.936 9 O -0.246 6.246 10 C -0.001 4.001 11 C 0.000 4.000 12 H 0.145 0.855 13 C -0.063 4.063 14 N -0.178 5.178 15 C 0.003 3.997 16 C -0.581 4.581 17 H 0.073 0.927 18 C -0.186 4.186 19 N -0.560 5.560 20 Si 0.776 3.224 21 H -0.207 1.207 22 H -0.206 1.206 23 H -0.188 1.188 24 C -0.237 4.237 25 C -0.096 4.096 26 H 0.129 0.871 27 H 0.094 0.906 28 H 0.132 0.868 29 H 0.151 0.849 30 H 0.153 0.847 31 H 0.167 0.833 32 H 0.148 0.852 33 H 0.090 0.910 34 H 0.120 0.880 35 H 0.028 0.972 36 H 0.062 0.938 37 H 0.075 0.925 38 H 0.155 0.845 39 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -25.751 -4.662 8.255 27.440 hybrid contribution 1.323 0.603 -0.550 1.555 sum -24.428 -4.059 7.705 25.933 Atomic orbital electron populations 1.22315 0.91554 1.05815 1.05913 1.25257 0.93316 0.89758 0.68513 1.90470 1.73215 1.36891 1.37660 1.21270 0.89317 0.97588 1.08024 1.19767 0.96474 1.03417 0.92867 1.21076 0.92524 0.96855 0.98912 1.20641 0.95221 1.06781 0.96214 1.19330 0.82609 0.96438 0.95237 1.86048 1.19620 1.86260 1.32683 1.22880 0.90113 1.03309 0.83790 1.19202 0.90907 0.90675 0.99199 0.85479 1.29443 0.91682 0.93843 0.91333 1.81039 1.11224 1.13181 1.12325 1.18970 0.94532 0.97453 0.88746 1.21452 0.96937 1.46755 0.92941 0.92664 1.25695 1.02468 0.95407 0.95015 1.70008 1.37910 1.49612 0.98520 0.85720 0.80201 0.78999 0.77502 1.20651 1.20577 1.18831 1.21491 0.96701 1.08238 0.97247 1.21099 0.93079 0.96593 0.98823 0.87136 0.90603 0.86753 0.84910 0.84682 0.83314 0.85180 0.91039 0.88030 0.97197 0.93838 0.92539 0.84531 0.83939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.04 10.25 71.23 0.73 -0.31 16 2 C 0.35 4.68 7.26 29.10 0.21 4.89 16 3 O -0.51 -12.53 16.77 -1.45 -0.02 -12.55 16 4 C -0.13 -1.18 5.75 29.10 0.17 -1.01 16 5 C -0.12 -2.36 4.38 -19.85 -0.09 -2.45 16 6 C -0.08 -1.57 9.69 22.25 0.22 -1.36 16 7 C -0.17 -4.44 9.99 22.37 0.22 -4.22 16 8 C 0.11 3.20 6.69 22.51 0.15 3.35 16 9 O -0.33 -10.79 9.87 -92.47 -0.91 -11.71 16 10 C 0.07 2.32 4.09 71.98 0.29 2.62 16 11 C 0.02 0.81 2.45 -12.60 -0.03 0.78 16 12 H 0.13 4.43 8.14 -2.39 -0.02 4.41 16 13 C 0.25 10.82 13.71 89.43 1.23 12.04 16 14 N -0.50 -23.13 18.54 20.02 0.37 -22.76 16 15 C 0.04 1.89 4.42 29.85 0.13 2.02 16 16 C -0.54 -28.71 8.60 25.60 0.22 -28.49 16 17 H 0.06 2.90 7.59 -2.91 -0.02 2.87 16 18 C 0.01 0.74 5.46 84.66 0.46 1.20 16 19 N -0.92 -52.38 13.29 21.45 0.28 -52.10 16 20 Si 0.95 43.38 29.54 68.60 2.03 45.41 16 21 H -0.28 -12.93 7.11 99.48 0.71 -12.23 16 22 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16 23 H -0.26 -11.50 7.11 99.48 0.71 -10.79 16 24 C -0.22 -5.64 9.04 22.36 0.20 -5.44 16 25 C -0.08 -1.67 9.69 22.25 0.22 -1.45 16 26 H 0.11 0.27 8.14 -2.39 -0.02 0.25 16 27 H 0.08 0.57 8.14 -2.39 -0.02 0.55 16 28 H 0.11 -0.06 8.12 -2.38 -0.02 -0.08 16 29 H 0.13 0.56 8.08 -2.38 -0.02 0.54 16 30 H 0.14 0.50 8.08 -2.39 -0.02 0.48 16 31 H 0.15 2.17 8.06 -2.91 -0.02 2.15 16 32 H 0.13 3.21 8.06 -2.91 -0.02 3.19 16 33 H 0.07 2.14 7.65 -2.39 -0.02 2.12 16 34 H 0.10 2.75 7.67 -2.39 -0.02 2.73 16 35 H 0.01 0.48 8.14 -2.38 -0.02 0.46 16 36 H 0.04 1.98 8.14 -2.39 -0.02 1.96 16 37 H 0.27 14.37 8.31 -92.71 -0.77 13.60 16 38 H 0.14 3.26 6.30 -2.91 -0.02 3.24 16 39 H 0.14 2.29 8.06 -2.91 -0.02 2.27 16 Total: -1.00 -72.69 347.51 7.13 -65.57 By element: Atomic # 1 Polarization: 4.92 SS G_CDS: 1.05 Total: 5.97 kcal Atomic # 6 Polarization: -22.16 SS G_CDS: 4.33 Total: -17.83 kcal Atomic # 7 Polarization: -75.51 SS G_CDS: 0.66 Total: -74.85 kcal Atomic # 8 Polarization: -23.32 SS G_CDS: -0.94 Total: -24.26 kcal Atomic # 14 Polarization: 43.38 SS G_CDS: 2.03 Total: 45.41 kcal Total: -72.69 7.13 -65.57 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000581828412.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.194 kcal (2) G-P(sol) polarization free energy of solvation -72.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.565 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds