Wall clock time and date at job start Tue Mar 31 2020 06:03:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09006 * 109.47142 * 2 1 4 4 C 1.53000 * 109.47426 * 119.99709 * 2 1 3 5 5 C 1.52996 * 117.50329 * 231.37672 * 4 2 1 6 6 C 1.52993 * 117.50370 * 300.00332 * 4 2 1 7 7 N 1.46500 * 109.46986 * 240.00429 * 2 1 3 8 8 C 1.46497 * 119.99772 * 299.99274 * 7 2 1 9 9 S 1.65597 * 120.00147 * 120.00163 * 7 2 1 10 10 O 1.42100 * 104.27462 * 206.06741 * 9 7 2 11 11 O 1.42099 * 104.27525 * 333.92275 * 9 7 2 12 12 C 1.81396 * 104.45357 * 89.99538 * 9 7 2 13 13 C 1.53003 * 109.47327 * 173.91348 * 12 9 7 14 14 C 1.50700 * 115.54576 * 65.19643 * 13 12 9 15 15 H 1.08000 * 120.00609 * 264.78669 * 14 13 12 16 16 C 1.37886 * 119.99895 * 84.78636 * 14 13 12 17 17 N 1.31516 * 119.99611 * 352.22205 * 16 14 13 18 18 Si 1.86797 * 120.00141 * 172.22075 * 16 14 13 19 19 H 1.48500 * 109.46972 * 59.99739 * 18 16 14 20 20 H 1.48500 * 109.47017 * 180.02562 * 18 16 14 21 21 H 1.48506 * 109.47105 * 300.00432 * 18 16 14 22 22 C 1.52997 * 117.50209 * 279.53144 * 13 12 9 23 23 C 1.52994 * 117.50004 * 210.86917 * 13 12 9 24 24 H 1.09003 * 109.46663 * 180.02562 * 1 2 3 25 25 H 1.09007 * 109.47011 * 299.99688 * 1 2 3 26 26 H 1.08994 * 109.47310 * 59.99590 * 1 2 3 27 27 H 1.09005 * 115.55542 * 85.69320 * 4 2 1 28 28 H 1.09003 * 117.50007 * 214.98167 * 5 4 2 29 29 H 1.08998 * 117.49697 * 0.02562 * 5 4 2 30 30 H 1.09007 * 117.49826 * 359.97438 * 6 4 2 31 31 H 1.09000 * 117.50141 * 145.01262 * 6 4 2 32 32 H 1.08999 * 109.47253 * 90.00427 * 8 7 2 33 33 H 1.08999 * 109.47411 * 210.00305 * 8 7 2 34 34 H 1.09003 * 109.47661 * 330.00564 * 8 7 2 35 35 H 1.08996 * 109.47336 * 293.91389 * 12 9 7 36 36 H 1.09000 * 109.47265 * 53.91411 * 12 9 7 37 37 H 0.96999 * 119.99806 * 185.02183 * 17 16 14 38 38 H 1.09005 * 117.49444 * 359.97438 * 22 13 12 39 39 H 1.08990 * 117.50281 * 145.01646 * 22 13 12 40 40 H 1.09001 * 117.49624 * 214.97953 * 23 13 12 41 41 H 1.09002 * 117.50325 * 359.97438 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 1.2493 5 6 3.0742 0.0052 2.1116 6 6 1.6358 -0.1495 2.6096 7 7 2.0183 -0.6905 -1.1962 8 6 1.6645 -2.0931 -1.4280 9 16 2.9703 0.1143 -2.2862 10 8 2.7432 -0.5611 -3.5156 11 8 2.6121 1.4797 -2.1234 12 6 4.6648 -0.1728 -1.7059 13 6 5.6557 0.3988 -2.7221 14 6 5.6231 1.8960 -2.8903 15 1 5.0352 2.3380 -3.6811 16 6 6.3440 2.7017 -2.0345 17 7 6.9352 2.1799 -0.9819 18 14 6.4810 4.5341 -2.3701 19 1 5.1248 5.1391 -2.3754 20 1 7.3037 5.1713 -1.3107 21 1 7.1237 4.7487 -3.6916 22 6 5.9624 -0.4447 -3.9612 23 6 7.0112 -0.2979 -2.8559 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8901 26 1 -0.3633 0.5139 -0.8899 27 1 2.1272 -1.8044 1.1643 28 1 3.8417 -0.6001 2.5941 29 1 3.3909 0.9971 1.7892 30 1 1.0068 0.7407 2.6147 31 1 1.4569 -0.8566 3.4196 32 1 0.7376 -2.1444 -1.9993 33 1 2.4629 -2.5818 -1.9864 34 1 1.5295 -2.5969 -0.4708 35 1 4.8075 0.3186 -0.7435 36 1 4.8347 -1.2438 -1.5957 37 1 7.3806 2.7556 -0.3407 38 1 5.4586 -1.4071 -4.0522 39 1 6.1411 0.0832 -4.8978 40 1 7.8795 0.3267 -3.0660 41 1 7.1974 -1.1632 -2.2197 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000589127804.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:21 Heat of formation + Delta-G solvation = -23.798011 kcal Electronic energy + Delta-G solvation = -22414.302414 eV Core-core repulsion = 19230.181402 eV Total energy + Delta-G solvation = -3184.121011 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 287.134 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -38.44605 -36.73748 -36.26399 -35.21772 -34.88620 -32.03032 -30.21855 -28.11748 -26.27333 -25.42094 -23.72650 -22.17045 -21.20130 -19.95917 -19.41587 -18.35271 -17.16686 -16.43585 -16.15145 -15.16282 -14.92747 -14.63600 -14.53148 -13.99234 -13.82154 -13.49859 -13.11504 -12.76311 -12.39059 -12.29761 -12.04637 -11.86986 -11.80394 -11.42805 -11.29217 -11.23351 -11.03682 -10.90183 -10.86656 -10.72227 -10.58422 -10.44282 -10.31266 -10.08435 -9.90848 -9.68402 -8.95927 -8.76235 -8.54847 -8.04509 -6.12574 -4.23012 1.08084 3.32050 3.32996 3.34854 3.41610 3.88898 4.38142 4.58719 4.71536 4.83770 4.97515 5.05906 5.14265 5.15388 5.22416 5.27626 5.44974 5.49240 5.62236 5.67992 5.72096 5.78224 5.88934 5.93421 6.01470 6.03728 6.12115 6.23593 6.25788 6.28193 6.38374 6.51781 6.63882 6.73042 6.93450 7.01294 7.27410 7.39968 7.81408 8.22026 8.81832 9.47702 10.94916 Molecular weight = 287.13amu Principal moments of inertia in cm(-1) A = 0.016431 B = 0.006980 C = 0.006056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1703.712903 B = 4010.536825 C = 4622.509069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.174 3.826 3 H 0.103 0.897 4 C -0.166 4.166 5 C -0.178 4.178 6 C -0.176 4.176 7 N -1.007 6.007 8 C 0.097 3.903 9 S 2.604 3.396 10 O -0.972 6.972 11 O -0.949 6.949 12 C -0.551 4.551 13 C 0.044 3.956 14 C -0.517 4.517 15 H 0.067 0.933 16 C 0.083 3.917 17 N -0.874 5.874 18 Si 0.889 3.111 19 H -0.270 1.270 20 H -0.286 1.286 21 H -0.274 1.274 22 C -0.209 4.209 23 C -0.141 4.141 24 H 0.057 0.943 25 H 0.064 0.936 26 H 0.060 0.940 27 H 0.108 0.892 28 H 0.094 0.906 29 H 0.101 0.899 30 H 0.095 0.905 31 H 0.092 0.908 32 H 0.052 0.948 33 H 0.067 0.933 34 H 0.066 0.934 35 H 0.134 0.866 36 H 0.096 0.904 37 H 0.263 0.737 38 H 0.074 0.926 39 H 0.086 0.914 40 H 0.085 0.915 41 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.067 -7.935 6.313 13.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.067 3.933 3 H 0.121 0.879 4 C -0.186 4.186 5 C -0.215 4.215 6 C -0.214 4.214 7 N -0.842 5.842 8 C -0.049 4.049 9 S 2.703 3.297 10 O -0.962 6.962 11 O -0.939 6.939 12 C -0.684 4.684 13 C 0.042 3.958 14 C -0.554 4.554 15 H 0.085 0.915 16 C -0.122 4.122 17 N -0.509 5.509 18 Si 0.716 3.284 19 H -0.195 1.195 20 H -0.211 1.211 21 H -0.199 1.199 22 C -0.246 4.246 23 C -0.181 4.181 24 H 0.076 0.924 25 H 0.083 0.917 26 H 0.079 0.921 27 H 0.126 0.874 28 H 0.113 0.887 29 H 0.119 0.881 30 H 0.113 0.887 31 H 0.110 0.890 32 H 0.071 0.929 33 H 0.086 0.914 34 H 0.085 0.915 35 H 0.152 0.848 36 H 0.114 0.886 37 H 0.073 0.927 38 H 0.093 0.907 39 H 0.104 0.896 40 H 0.104 0.896 41 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -9.273 -7.423 5.693 13.172 hybrid contribution 0.670 0.513 0.569 1.018 sum -8.602 -6.910 6.262 12.687 Atomic orbital electron populations 1.22046 0.94831 1.02123 1.02175 1.20396 0.94539 0.96074 0.82270 0.87900 1.22701 1.04596 0.99784 0.91528 1.23110 0.92191 1.02717 1.03490 1.22913 0.98703 1.03158 0.96581 1.57919 1.66750 1.21668 1.37862 1.21309 1.01037 0.81408 1.01159 1.05320 0.76981 0.73780 0.73638 1.93486 1.85227 1.75715 1.41778 1.93521 1.82043 1.32918 1.85448 1.29999 1.19838 1.06764 1.11808 1.18284 0.93517 0.93213 0.90836 1.20483 1.30349 0.88031 1.16521 0.91468 1.24943 0.93875 0.98791 0.94623 1.69972 1.34687 1.35446 1.10773 0.86676 0.78674 0.84872 0.78171 1.19462 1.21114 1.19882 1.23194 1.06004 1.00793 0.94631 1.22547 0.94283 1.00937 1.00294 0.92354 0.91725 0.92112 0.87429 0.88716 0.88051 0.88675 0.89000 0.92904 0.91407 0.91519 0.84802 0.88580 0.92714 0.90739 0.89553 0.89608 0.91568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.84 9.03 37.16 0.34 -1.50 16 2 C 0.17 2.49 2.81 -67.93 -0.19 2.30 16 3 H 0.10 1.69 6.63 -51.93 -0.34 1.34 16 4 C -0.17 -2.02 5.15 -90.63 -0.47 -2.49 16 5 C -0.18 -2.26 10.18 -26.73 -0.27 -2.53 16 6 C -0.18 -1.84 9.73 -26.74 -0.26 -2.10 16 7 N -1.01 -15.92 3.00 -114.61 -0.34 -16.26 16 8 C 0.10 1.22 9.23 59.85 0.55 1.77 16 9 S 2.60 54.14 5.10 -107.50 -0.55 53.59 16 10 O -0.97 -21.77 17.09 -57.54 -0.98 -22.75 16 11 O -0.95 -22.88 16.23 -57.54 -0.93 -23.81 16 12 C -0.55 -11.75 6.03 37.16 0.22 -11.53 16 13 C 0.04 1.08 1.32 -155.66 -0.21 0.87 16 14 C -0.52 -14.24 8.18 -34.44 -0.28 -14.52 16 15 H 0.07 1.90 7.83 -52.49 -0.41 1.48 16 16 C 0.08 2.26 5.38 -17.82 -0.10 2.17 16 17 N -0.87 -23.94 12.98 55.43 0.72 -23.22 16 18 Si 0.89 21.40 29.55 -169.99 -5.02 16.37 16 19 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 20 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 21 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 22 C -0.21 -4.65 9.96 -26.70 -0.27 -4.91 16 23 C -0.14 -3.25 9.49 -26.70 -0.25 -3.50 16 24 H 0.06 0.61 7.67 -51.93 -0.40 0.21 16 25 H 0.06 0.66 7.29 -51.93 -0.38 0.28 16 26 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 27 H 0.11 1.19 6.59 -51.93 -0.34 0.85 16 28 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 29 H 0.10 1.44 8.05 -51.93 -0.42 1.03 16 30 H 0.09 0.95 7.61 -51.92 -0.40 0.55 16 31 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.07 0.84 7.79 -51.93 -0.40 0.43 16 34 H 0.07 0.66 6.43 -51.93 -0.33 0.32 16 35 H 0.13 2.98 8.14 -51.93 -0.42 2.55 16 36 H 0.10 1.75 8.09 -51.92 -0.42 1.33 16 37 H 0.26 6.89 8.32 -40.82 -0.34 6.55 16 38 H 0.07 1.51 8.14 -51.93 -0.42 1.08 16 39 H 0.09 1.90 8.14 -51.93 -0.42 1.47 16 40 H 0.09 2.07 8.14 -51.93 -0.42 1.65 16 41 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 LS Contribution 347.33 15.07 5.23 5.23 Total: -1.00 -31.70 347.33 -9.84 -41.54 By element: Atomic # 1 Polarization: 12.05 SS G_CDS: -6.79 Total: 5.26 kcal Atomic # 6 Polarization: -34.79 SS G_CDS: -1.18 Total: -35.97 kcal Atomic # 7 Polarization: -39.85 SS G_CDS: 0.38 Total: -39.48 kcal Atomic # 8 Polarization: -44.64 SS G_CDS: -1.92 Total: -46.56 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.37 kcal Atomic # 16 Polarization: 54.14 SS G_CDS: -0.55 Total: 53.59 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -31.70 -9.84 -41.54 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589127804.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.742 kcal (2) G-P(sol) polarization free energy of solvation -31.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.540 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds