Wall clock time and date at job start Tue Mar 31 2020 06:03:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09006 * 109.47142 * 2 1 4 4 C 1.53000 * 109.47426 * 119.99709 * 2 1 3 5 5 C 1.52996 * 117.50329 * 231.37672 * 4 2 1 6 6 C 1.52993 * 117.50370 * 300.00332 * 4 2 1 7 7 N 1.46500 * 109.46986 * 240.00429 * 2 1 3 8 8 C 1.46497 * 119.99772 * 299.99274 * 7 2 1 9 9 S 1.65597 * 120.00147 * 120.00163 * 7 2 1 10 10 O 1.42100 * 104.27462 * 206.06741 * 9 7 2 11 11 O 1.42099 * 104.27525 * 333.92275 * 9 7 2 12 12 C 1.81396 * 104.45357 * 89.99538 * 9 7 2 13 13 C 1.53003 * 109.47327 * 173.91348 * 12 9 7 14 14 C 1.50700 * 115.54576 * 65.19643 * 13 12 9 15 15 H 1.08000 * 120.00609 * 264.78669 * 14 13 12 16 16 C 1.37886 * 119.99895 * 84.78636 * 14 13 12 17 17 N 1.31516 * 119.99611 * 352.22205 * 16 14 13 18 18 Si 1.86797 * 120.00141 * 172.22075 * 16 14 13 19 19 H 1.48500 * 109.46972 * 59.99739 * 18 16 14 20 20 H 1.48500 * 109.47017 * 180.02562 * 18 16 14 21 21 H 1.48506 * 109.47105 * 300.00432 * 18 16 14 22 22 C 1.52997 * 117.50209 * 279.53144 * 13 12 9 23 23 C 1.52994 * 117.50004 * 210.86917 * 13 12 9 24 24 H 1.09003 * 109.46663 * 180.02562 * 1 2 3 25 25 H 1.09007 * 109.47011 * 299.99688 * 1 2 3 26 26 H 1.08994 * 109.47310 * 59.99590 * 1 2 3 27 27 H 1.09005 * 115.55542 * 85.69320 * 4 2 1 28 28 H 1.09003 * 117.50007 * 214.98167 * 5 4 2 29 29 H 1.08998 * 117.49697 * 0.02562 * 5 4 2 30 30 H 1.09007 * 117.49826 * 359.97438 * 6 4 2 31 31 H 1.09000 * 117.50141 * 145.01262 * 6 4 2 32 32 H 1.08999 * 109.47253 * 90.00427 * 8 7 2 33 33 H 1.08999 * 109.47411 * 210.00305 * 8 7 2 34 34 H 1.09003 * 109.47661 * 330.00564 * 8 7 2 35 35 H 1.08996 * 109.47336 * 293.91389 * 12 9 7 36 36 H 1.09000 * 109.47265 * 53.91411 * 12 9 7 37 37 H 0.96999 * 119.99806 * 185.02183 * 17 16 14 38 38 H 1.09005 * 117.49444 * 359.97438 * 22 13 12 39 39 H 1.08990 * 117.50281 * 145.01646 * 22 13 12 40 40 H 1.09001 * 117.49624 * 214.97953 * 23 13 12 41 41 H 1.09002 * 117.50325 * 359.97438 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 1.2493 5 6 3.0742 0.0052 2.1116 6 6 1.6358 -0.1495 2.6096 7 7 2.0183 -0.6905 -1.1962 8 6 1.6645 -2.0931 -1.4280 9 16 2.9703 0.1143 -2.2862 10 8 2.7432 -0.5611 -3.5156 11 8 2.6121 1.4797 -2.1234 12 6 4.6648 -0.1728 -1.7059 13 6 5.6557 0.3988 -2.7221 14 6 5.6231 1.8960 -2.8903 15 1 5.0352 2.3380 -3.6811 16 6 6.3440 2.7017 -2.0345 17 7 6.9352 2.1799 -0.9819 18 14 6.4810 4.5341 -2.3701 19 1 5.1248 5.1391 -2.3754 20 1 7.3037 5.1713 -1.3107 21 1 7.1237 4.7487 -3.6916 22 6 5.9624 -0.4447 -3.9612 23 6 7.0112 -0.2979 -2.8559 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8901 26 1 -0.3633 0.5139 -0.8899 27 1 2.1272 -1.8044 1.1643 28 1 3.8417 -0.6001 2.5941 29 1 3.3909 0.9971 1.7892 30 1 1.0068 0.7407 2.6147 31 1 1.4569 -0.8566 3.4196 32 1 0.7376 -2.1444 -1.9993 33 1 2.4629 -2.5818 -1.9864 34 1 1.5295 -2.5969 -0.4708 35 1 4.8075 0.3186 -0.7435 36 1 4.8347 -1.2438 -1.5957 37 1 7.3806 2.7556 -0.3407 38 1 5.4586 -1.4071 -4.0522 39 1 6.1411 0.0832 -4.8978 40 1 7.8795 0.3267 -3.0660 41 1 7.1974 -1.1632 -2.2197 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000589127804.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:21 Heat of formation + Delta-G solvation = -43.570363 kcal Electronic energy + Delta-G solvation = -22415.159807 eV Core-core repulsion = 19230.181402 eV Total energy + Delta-G solvation = -3184.978405 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 287.134 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.48358 -38.57794 -37.99060 -36.82143 -36.11402 -34.09870 -31.26385 -29.83827 -27.57660 -27.24969 -24.75595 -23.08662 -23.00775 -21.51533 -20.82205 -19.79032 -18.66705 -18.35549 -17.41002 -16.88882 -16.64514 -16.24855 -15.68875 -15.62297 -15.10836 -14.88356 -14.68670 -13.84623 -13.72188 -13.68026 -13.51398 -13.31390 -13.14727 -13.01571 -12.91052 -12.87521 -12.86544 -12.46038 -12.38364 -12.25506 -12.13041 -11.95100 -11.78530 -11.52492 -11.22777 -10.89469 -10.87001 -10.56388 -10.13930 -9.71915 -8.20354 -6.35100 -0.53086 1.37096 1.38812 1.46101 1.91554 2.38114 2.93023 2.99677 3.06161 3.32854 3.39579 3.68550 3.83249 4.00845 4.09077 4.21700 4.24835 4.28216 4.47836 4.49614 4.50746 4.58270 4.72050 4.81472 4.82830 4.88229 4.93727 4.95537 4.99325 5.08242 5.14993 5.19638 5.29870 5.32595 5.45481 5.47588 5.56944 5.69773 5.78968 6.21232 6.70099 7.36645 8.86262 Molecular weight = 287.13amu Principal moments of inertia in cm(-1) A = 0.016431 B = 0.006980 C = 0.006056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1703.712903 B = 4010.536825 C = 4622.509069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.165 3.835 3 H 0.071 0.929 4 C -0.165 4.165 5 C -0.202 4.202 6 C -0.151 4.151 7 N -0.998 5.998 8 C 0.084 3.916 9 S 2.616 3.384 10 O -0.991 6.991 11 O -0.993 6.993 12 C -0.547 4.547 13 C 0.010 3.990 14 C -0.537 4.537 15 H 0.046 0.954 16 C 0.044 3.956 17 N -0.889 5.889 18 Si 0.933 3.067 19 H -0.278 1.278 20 H -0.272 1.272 21 H -0.267 1.267 22 C -0.197 4.197 23 C -0.138 4.138 24 H 0.080 0.920 25 H 0.083 0.917 26 H 0.043 0.957 27 H 0.128 0.872 28 H 0.101 0.899 29 H 0.073 0.927 30 H 0.099 0.901 31 H 0.118 0.882 32 H 0.060 0.940 33 H 0.071 0.929 34 H 0.102 0.898 35 H 0.119 0.881 36 H 0.129 0.871 37 H 0.265 0.735 38 H 0.099 0.901 39 H 0.082 0.918 40 H 0.066 0.934 41 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.094 -9.860 7.586 16.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.059 3.941 3 H 0.089 0.911 4 C -0.185 4.185 5 C -0.239 4.239 6 C -0.188 4.188 7 N -0.837 5.837 8 C -0.061 4.061 9 S 2.715 3.285 10 O -0.982 6.982 11 O -0.984 6.984 12 C -0.680 4.680 13 C 0.008 3.992 14 C -0.575 4.575 15 H 0.064 0.936 16 C -0.160 4.160 17 N -0.525 5.525 18 Si 0.758 3.242 19 H -0.203 1.203 20 H -0.197 1.197 21 H -0.192 1.192 22 C -0.234 4.234 23 C -0.177 4.177 24 H 0.099 0.901 25 H 0.102 0.898 26 H 0.062 0.938 27 H 0.146 0.854 28 H 0.120 0.880 29 H 0.091 0.909 30 H 0.117 0.883 31 H 0.136 0.864 32 H 0.079 0.921 33 H 0.090 0.910 34 H 0.121 0.879 35 H 0.137 0.863 36 H 0.147 0.853 37 H 0.075 0.925 38 H 0.117 0.883 39 H 0.100 0.900 40 H 0.085 0.915 41 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -10.285 -9.347 6.954 15.540 hybrid contribution 0.946 1.082 0.182 1.448 sum -9.339 -8.266 7.136 14.368 Atomic orbital electron populations 1.22045 0.92753 1.03665 1.02373 1.20566 0.96146 0.94801 0.82587 0.91061 1.22672 1.04383 1.00384 0.91054 1.23094 0.93907 1.01721 1.05222 1.23031 0.96368 1.03441 0.95981 1.57523 1.65521 1.23032 1.37575 1.21675 1.01541 0.79349 1.03501 1.04624 0.77009 0.73022 0.73862 1.93446 1.85474 1.75788 1.43444 1.93460 1.82670 1.35986 1.86241 1.29871 1.19736 1.08409 1.09941 1.18417 0.95376 0.92242 0.93144 1.20658 1.30326 0.90313 1.16163 0.93562 1.25512 0.93843 1.01966 0.94638 1.70018 1.35024 1.36381 1.11043 0.85996 0.78297 0.81242 0.78659 1.20325 1.19678 1.19219 1.23242 1.05140 1.01256 0.93767 1.22506 0.93117 1.01088 1.00971 0.90065 0.89776 0.93759 0.85414 0.88011 0.90877 0.88273 0.86407 0.92084 0.91042 0.87911 0.86294 0.85307 0.92536 0.88278 0.89981 0.91533 0.89368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.27 9.03 71.98 0.65 -2.62 16 2 C 0.16 4.54 2.81 44.99 0.13 4.67 16 3 H 0.07 2.42 6.63 -2.38 -0.02 2.40 16 4 C -0.17 -3.60 5.15 -10.80 -0.06 -3.66 16 5 C -0.20 -4.95 10.18 30.59 0.31 -4.64 16 6 C -0.15 -2.72 9.73 30.59 0.30 -2.42 16 7 N -1.00 -30.23 3.00 -516.52 -1.55 -31.78 16 8 C 0.08 1.85 9.23 127.77 1.18 3.03 16 9 S 2.62 109.32 5.10 -56.49 -0.29 109.03 16 10 O -0.99 -44.05 17.09 -127.65 -2.18 -46.23 16 11 O -0.99 -49.79 16.23 -127.65 -2.07 -51.86 16 12 C -0.55 -23.21 6.03 71.98 0.43 -22.77 16 13 C 0.01 0.51 1.32 -52.93 -0.07 0.44 16 14 C -0.54 -30.41 8.18 25.60 0.21 -30.20 16 15 H 0.05 2.73 7.83 -2.91 -0.02 2.70 16 16 C 0.04 2.43 5.38 84.66 0.46 2.88 16 17 N -0.89 -49.38 12.98 21.45 0.28 -49.10 16 18 Si 0.93 44.55 29.55 68.60 2.03 46.58 16 19 H -0.28 -13.52 7.11 99.48 0.71 -12.82 16 20 H -0.27 -12.29 7.11 99.48 0.71 -11.59 16 21 H -0.27 -12.38 7.11 99.48 0.71 -11.68 16 22 C -0.20 -8.61 9.96 30.62 0.30 -8.30 16 23 C -0.14 -6.26 9.49 30.62 0.29 -5.97 16 24 H 0.08 1.40 7.67 -2.39 -0.02 1.38 16 25 H 0.08 1.50 7.29 -2.38 -0.02 1.48 16 26 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16 27 H 0.13 2.28 6.59 -2.38 -0.02 2.27 16 28 H 0.10 2.30 8.14 -2.39 -0.02 2.28 16 29 H 0.07 2.18 8.05 -2.39 -0.02 2.16 16 30 H 0.10 1.72 7.61 -2.38 -0.02 1.70 16 31 H 0.12 1.58 8.14 -2.39 -0.02 1.56 16 32 H 0.06 1.27 8.14 -2.39 -0.02 1.26 16 33 H 0.07 1.55 7.79 -2.39 -0.02 1.53 16 34 H 0.10 1.55 6.43 -2.39 -0.02 1.53 16 35 H 0.12 5.40 8.14 -2.39 -0.02 5.38 16 36 H 0.13 4.45 8.09 -2.39 -0.02 4.43 16 37 H 0.27 14.03 8.32 -92.71 -0.77 13.26 16 38 H 0.10 3.80 8.14 -2.38 -0.02 3.78 16 39 H 0.08 3.60 8.14 -2.39 -0.02 3.58 16 40 H 0.07 3.24 8.14 -2.39 -0.02 3.22 16 41 H 0.09 3.56 8.14 -2.39 -0.02 3.54 16 Total: -1.00 -69.81 347.33 1.34 -68.47 By element: Atomic # 1 Polarization: 23.46 SS G_CDS: 0.99 Total: 24.46 kcal Atomic # 6 Polarization: -73.69 SS G_CDS: 4.13 Total: -69.56 kcal Atomic # 7 Polarization: -79.61 SS G_CDS: -1.27 Total: -80.89 kcal Atomic # 8 Polarization: -93.84 SS G_CDS: -4.25 Total: -98.09 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 2.03 Total: 46.58 kcal Atomic # 16 Polarization: 109.32 SS G_CDS: -0.29 Total: 109.03 kcal Total: -69.81 1.34 -68.47 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589127804.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.898 kcal (2) G-P(sol) polarization free energy of solvation -69.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.468 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds