Wall clock time and date at job start Tue Mar 31 2020 06:03:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09005 * 109.46821 * 2 1 4 4 C 1.52999 * 109.47165 * 240.00069 * 2 1 3 5 5 C 1.53002 * 117.49700 * 128.62130 * 4 2 1 6 6 C 1.52999 * 60.00086 * 252.51026 * 5 4 2 7 7 N 1.46497 * 109.47301 * 120.00018 * 2 1 3 8 8 C 1.46499 * 119.99877 * 60.00066 * 7 2 1 9 9 S 1.65598 * 120.00096 * 240.00328 * 7 2 1 10 10 O 1.42104 * 104.27721 * 333.92388 * 9 7 2 11 11 O 1.42102 * 104.27547 * 206.06991 * 9 7 2 12 12 C 1.81402 * 104.44974 * 89.99935 * 9 7 2 13 13 C 1.53006 * 109.46839 * 186.12156 * 12 9 7 14 14 C 1.50700 * 115.55059 * 299.71715 * 13 12 9 15 15 H 1.07999 * 119.99478 * 95.16774 * 14 13 12 16 16 C 1.37868 * 120.00041 * 275.16687 * 14 13 12 17 17 N 1.31522 * 120.00151 * 7.14310 * 16 14 13 18 18 Si 1.86802 * 119.99982 * 187.14555 * 16 14 13 19 19 H 1.48506 * 109.47215 * 180.02562 * 18 16 14 20 20 H 1.48498 * 109.46821 * 299.99930 * 18 16 14 21 21 H 1.48496 * 109.47317 * 59.99764 * 18 16 14 22 22 C 1.53006 * 117.49478 * 85.38934 * 13 12 9 23 23 C 1.52997 * 117.49479 * 154.04811 * 13 12 9 24 24 H 1.09005 * 109.47318 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.47398 * 300.00125 * 1 2 3 26 26 H 1.09007 * 109.47364 * 60.00149 * 1 2 3 27 27 H 1.09000 * 115.55350 * 274.32869 * 4 2 1 28 28 H 1.09000 * 117.50442 * 359.97438 * 5 4 2 29 29 H 1.09001 * 117.50008 * 145.02230 * 5 4 2 30 30 H 1.08998 * 117.50026 * 252.51248 * 6 5 4 31 31 H 1.09006 * 117.51917 * 107.48459 * 6 5 4 32 32 H 1.09004 * 109.47083 * 270.00279 * 8 7 2 33 33 H 1.09004 * 109.47139 * 30.00290 * 8 7 2 34 34 H 1.08999 * 109.47238 * 149.99829 * 8 7 2 35 35 H 1.09000 * 109.47098 * 66.12454 * 12 9 7 36 36 H 1.09003 * 109.46682 * 306.11893 * 12 9 7 37 37 H 0.97001 * 119.99597 * 355.44566 * 17 16 14 38 38 H 1.08993 * 117.49346 * 214.99610 * 22 13 12 39 39 H 1.08998 * 117.50055 * 0.02562 * 22 13 12 40 40 H 1.08996 * 117.50088 * 359.97421 * 23 13 12 41 41 H 1.09000 * 117.49797 * 144.97582 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.0741 0.0053 -2.1116 6 6 1.6357 -0.1494 -2.6096 7 7 2.0183 -0.6906 1.1961 8 6 1.6644 -2.0932 1.4279 9 16 2.9703 0.1142 2.2862 10 8 3.6005 1.1302 1.5181 11 8 3.7315 -0.9106 2.9104 12 6 1.7962 0.8412 3.4625 13 6 2.5488 1.7442 4.4420 14 6 3.6063 1.0636 5.2723 15 1 4.6371 1.0771 4.9504 16 6 3.2579 0.4238 6.4428 17 7 1.9901 0.2850 6.7641 18 14 4.5864 -0.2459 7.5723 19 1 3.9550 -0.8844 8.7551 20 1 5.3969 -1.2524 6.8408 21 1 5.4635 0.8661 8.0187 22 6 2.8091 3.1896 4.0129 23 6 1.7668 2.8871 5.0925 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 -0.3634 0.5138 -0.8900 27 1 2.1267 -1.8044 -1.1643 28 1 3.3908 0.9972 -1.7893 29 1 3.8416 -0.6000 -2.5942 30 1 1.4568 -0.8565 -3.4196 31 1 1.0060 0.7403 -2.6146 32 1 0.7375 -2.1444 1.9992 33 1 1.5296 -2.5969 0.4707 34 1 2.4629 -2.5819 1.9862 35 1 1.2946 0.0458 4.0137 36 1 1.0564 1.4302 2.9203 37 1 1.3028 0.6898 6.2122 38 1 3.7452 3.6482 4.3312 39 1 2.4438 3.4973 3.0331 40 1 0.7165 2.9960 4.8224 41 1 2.0171 3.1465 6.1211 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000589127805.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:24 Heat of formation + Delta-G solvation = -28.549539 kcal Electronic energy + Delta-G solvation = -22298.852740 eV Core-core repulsion = 19114.525687 eV Total energy + Delta-G solvation = -3184.327053 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 287.134 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -38.54825 -37.07166 -36.33387 -35.27496 -34.98985 -31.97798 -30.29238 -28.30114 -26.29765 -24.98172 -23.79143 -22.30014 -21.41138 -20.05098 -19.68899 -18.46341 -17.29198 -16.86346 -16.21138 -15.52711 -14.96509 -14.60792 -14.19631 -13.84294 -13.75577 -13.71921 -13.20635 -12.88681 -12.58890 -12.48317 -12.31037 -12.12337 -11.85663 -11.51965 -11.28600 -11.26588 -11.14020 -10.98369 -10.79042 -10.76219 -10.62828 -10.41670 -10.35606 -10.07743 -10.01189 -9.69134 -8.86792 -8.65397 -8.48114 -8.28029 -6.45874 -4.24459 0.98170 3.25797 3.45457 3.50038 3.66554 3.77892 4.49153 4.51931 4.57321 4.77567 4.85662 4.91898 5.00968 5.07775 5.16024 5.23187 5.31958 5.39345 5.50410 5.55071 5.65549 5.70239 5.79430 5.83562 5.88232 5.97627 6.03330 6.07483 6.10314 6.13112 6.17423 6.35316 6.40924 6.53016 6.74432 6.88413 7.02532 7.16913 8.03706 8.33417 8.76820 9.54818 10.94081 Molecular weight = 287.13amu Principal moments of inertia in cm(-1) A = 0.025035 B = 0.005581 C = 0.005281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1118.171680 B = 5015.843952 C = 5300.681557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.174 3.826 3 H 0.098 0.902 4 C -0.160 4.160 5 C -0.177 4.177 6 C -0.176 4.176 7 N -1.007 6.007 8 C 0.084 3.916 9 S 2.616 3.384 10 O -0.969 6.969 11 O -0.943 6.943 12 C -0.568 4.568 13 C 0.022 3.978 14 C -0.592 4.592 15 H 0.061 0.939 16 C 0.041 3.959 17 N -0.897 5.897 18 Si 1.062 2.938 19 H -0.281 1.281 20 H -0.281 1.281 21 H -0.285 1.285 22 C -0.191 4.191 23 C -0.165 4.165 24 H 0.062 0.938 25 H 0.059 0.941 26 H 0.065 0.935 27 H 0.108 0.892 28 H 0.100 0.900 29 H 0.092 0.908 30 H 0.092 0.908 31 H 0.095 0.905 32 H 0.050 0.950 33 H 0.069 0.931 34 H 0.084 0.916 35 H 0.124 0.876 36 H 0.098 0.902 37 H 0.274 0.726 38 H 0.089 0.911 39 H 0.075 0.925 40 H 0.069 0.931 41 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.847 -1.725 -14.482 15.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.067 3.933 3 H 0.116 0.884 4 C -0.180 4.180 5 C -0.214 4.214 6 C -0.214 4.214 7 N -0.842 5.842 8 C -0.061 4.061 9 S 2.713 3.287 10 O -0.959 6.959 11 O -0.933 6.933 12 C -0.700 4.700 13 C 0.020 3.980 14 C -0.629 4.629 15 H 0.079 0.921 16 C -0.167 4.167 17 N -0.530 5.530 18 Si 0.889 3.111 19 H -0.206 1.206 20 H -0.206 1.206 21 H -0.211 1.211 22 C -0.228 4.228 23 C -0.204 4.204 24 H 0.081 0.919 25 H 0.078 0.922 26 H 0.084 0.916 27 H 0.126 0.874 28 H 0.119 0.881 29 H 0.111 0.889 30 H 0.111 0.889 31 H 0.113 0.887 32 H 0.069 0.931 33 H 0.087 0.913 34 H 0.103 0.897 35 H 0.142 0.858 36 H 0.116 0.884 37 H 0.085 0.915 38 H 0.107 0.893 39 H 0.093 0.907 40 H 0.088 0.912 41 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -3.667 -2.599 -13.115 13.864 hybrid contribution -1.126 0.933 -1.248 1.922 sum -4.793 -1.666 -14.363 15.233 Atomic orbital electron populations 1.22164 0.95017 1.02689 1.02109 1.20369 0.93881 0.96046 0.82971 0.88372 1.22603 1.04391 0.99805 0.91204 1.23069 0.92228 1.02660 1.03485 1.22932 0.98568 1.03187 0.96720 1.57876 1.70759 1.20800 1.34814 1.21480 1.01276 0.81443 1.01944 1.04921 0.75512 0.74285 0.73931 1.93478 1.72926 1.60458 1.69039 1.93528 1.66663 1.56315 1.76757 1.30165 1.14403 1.11536 1.13884 1.18561 0.97641 0.85611 0.96222 1.21376 0.93341 1.39332 1.08876 0.92051 1.25811 1.00274 0.93856 0.96722 1.70775 1.00101 1.39740 1.42416 0.83648 0.74655 0.76771 0.75992 1.20624 1.20641 1.21144 1.23042 1.00623 1.01299 0.97822 1.22789 0.94563 1.05446 0.97592 0.91933 0.92191 0.91630 0.87393 0.88115 0.88926 0.88918 0.88695 0.93099 0.91278 0.89717 0.85759 0.88368 0.91452 0.89276 0.90695 0.91243 0.89292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.72 9.03 37.16 0.34 -1.39 16 2 C 0.17 2.32 2.81 -67.93 -0.19 2.13 16 3 H 0.10 1.42 6.63 -51.93 -0.34 1.07 16 4 C -0.16 -1.89 5.15 -90.62 -0.47 -2.35 16 5 C -0.18 -2.05 10.18 -26.73 -0.27 -2.33 16 6 C -0.18 -1.67 9.73 -26.73 -0.26 -1.93 16 7 N -1.01 -15.86 3.00 -114.61 -0.34 -16.20 16 8 C 0.08 1.14 9.67 59.85 0.58 1.72 16 9 S 2.62 54.48 5.06 -107.50 -0.54 53.94 16 10 O -0.97 -21.53 16.57 -57.54 -0.95 -22.49 16 11 O -0.94 -23.08 16.07 -57.54 -0.92 -24.01 16 12 C -0.57 -11.97 5.98 37.16 0.22 -11.74 16 13 C 0.02 0.54 0.95 -155.66 -0.15 0.39 16 14 C -0.59 -16.53 7.88 -34.44 -0.27 -16.80 16 15 H 0.06 1.77 7.82 -52.49 -0.41 1.36 16 16 C 0.04 1.14 5.39 -17.82 -0.10 1.05 16 17 N -0.90 -25.87 13.57 55.43 0.75 -25.12 16 18 Si 1.06 25.41 29.91 -169.99 -5.08 20.32 16 19 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 20 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 21 H -0.29 -6.47 7.11 56.52 0.40 -6.06 16 22 C -0.19 -4.19 9.95 -26.69 -0.27 -4.45 16 23 C -0.16 -3.70 8.74 -26.69 -0.23 -3.94 16 24 H 0.06 0.62 7.67 -51.93 -0.40 0.22 16 25 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 26 H 0.06 0.58 7.29 -51.93 -0.38 0.20 16 27 H 0.11 1.21 6.59 -51.93 -0.34 0.87 16 28 H 0.10 1.27 8.05 -51.93 -0.42 0.85 16 29 H 0.09 0.98 8.14 -51.93 -0.42 0.55 16 30 H 0.09 0.75 8.14 -51.93 -0.42 0.32 16 31 H 0.09 0.82 7.61 -51.93 -0.39 0.43 16 32 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 33 H 0.07 0.74 6.43 -51.93 -0.33 0.41 16 34 H 0.08 1.27 6.91 -51.93 -0.36 0.92 16 35 H 0.12 2.69 7.79 -51.92 -0.40 2.29 16 36 H 0.10 1.73 8.11 -51.92 -0.42 1.31 16 37 H 0.27 7.72 6.17 -40.82 -0.25 7.47 16 38 H 0.09 1.95 8.14 -51.93 -0.42 1.53 16 39 H 0.07 1.48 8.14 -51.93 -0.42 1.05 16 40 H 0.07 1.40 8.14 -51.93 -0.42 0.97 16 41 H 0.09 2.11 8.14 -51.93 -0.42 1.69 16 LS Contribution 343.15 15.07 5.17 5.17 Total: -1.00 -32.97 343.15 -9.63 -42.59 By element: Atomic # 1 Polarization: 12.08 SS G_CDS: -6.63 Total: 5.44 kcal Atomic # 6 Polarization: -38.59 SS G_CDS: -1.07 Total: -39.66 kcal Atomic # 7 Polarization: -41.73 SS G_CDS: 0.41 Total: -41.32 kcal Atomic # 8 Polarization: -44.62 SS G_CDS: -1.88 Total: -46.50 kcal Atomic # 14 Polarization: 25.41 SS G_CDS: -5.08 Total: 20.32 kcal Atomic # 16 Polarization: 54.48 SS G_CDS: -0.54 Total: 53.94 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -32.97 -9.63 -42.59 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589127805.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.044 kcal (2) G-P(sol) polarization free energy of solvation -32.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.594 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds