Wall clock time and date at job start Tue Mar 31 2020 06:03:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09005 * 109.46821 * 2 1 4 4 C 1.52999 * 109.47165 * 240.00069 * 2 1 3 5 5 C 1.53002 * 117.49700 * 128.62130 * 4 2 1 6 6 C 1.52999 * 60.00086 * 252.51026 * 5 4 2 7 7 N 1.46497 * 109.47301 * 120.00018 * 2 1 3 8 8 C 1.46499 * 119.99877 * 60.00066 * 7 2 1 9 9 S 1.65598 * 120.00096 * 240.00328 * 7 2 1 10 10 O 1.42104 * 104.27721 * 333.92388 * 9 7 2 11 11 O 1.42102 * 104.27547 * 206.06991 * 9 7 2 12 12 C 1.81402 * 104.44974 * 89.99935 * 9 7 2 13 13 C 1.53006 * 109.46839 * 186.12156 * 12 9 7 14 14 C 1.50700 * 115.55059 * 299.71715 * 13 12 9 15 15 H 1.07999 * 119.99478 * 95.16774 * 14 13 12 16 16 C 1.37868 * 120.00041 * 275.16687 * 14 13 12 17 17 N 1.31522 * 120.00151 * 7.14310 * 16 14 13 18 18 Si 1.86802 * 119.99982 * 187.14555 * 16 14 13 19 19 H 1.48506 * 109.47215 * 180.02562 * 18 16 14 20 20 H 1.48498 * 109.46821 * 299.99930 * 18 16 14 21 21 H 1.48496 * 109.47317 * 59.99764 * 18 16 14 22 22 C 1.53006 * 117.49478 * 85.38934 * 13 12 9 23 23 C 1.52997 * 117.49479 * 154.04811 * 13 12 9 24 24 H 1.09005 * 109.47318 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.47398 * 300.00125 * 1 2 3 26 26 H 1.09007 * 109.47364 * 60.00149 * 1 2 3 27 27 H 1.09000 * 115.55350 * 274.32869 * 4 2 1 28 28 H 1.09000 * 117.50442 * 359.97438 * 5 4 2 29 29 H 1.09001 * 117.50008 * 145.02230 * 5 4 2 30 30 H 1.08998 * 117.50026 * 252.51248 * 6 5 4 31 31 H 1.09006 * 117.51917 * 107.48459 * 6 5 4 32 32 H 1.09004 * 109.47083 * 270.00279 * 8 7 2 33 33 H 1.09004 * 109.47139 * 30.00290 * 8 7 2 34 34 H 1.08999 * 109.47238 * 149.99829 * 8 7 2 35 35 H 1.09000 * 109.47098 * 66.12454 * 12 9 7 36 36 H 1.09003 * 109.46682 * 306.11893 * 12 9 7 37 37 H 0.97001 * 119.99597 * 355.44566 * 17 16 14 38 38 H 1.08993 * 117.49346 * 214.99610 * 22 13 12 39 39 H 1.08998 * 117.50055 * 0.02562 * 22 13 12 40 40 H 1.08996 * 117.50088 * 359.97421 * 23 13 12 41 41 H 1.09000 * 117.49797 * 144.97582 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.0741 0.0053 -2.1116 6 6 1.6357 -0.1494 -2.6096 7 7 2.0183 -0.6906 1.1961 8 6 1.6644 -2.0932 1.4279 9 16 2.9703 0.1142 2.2862 10 8 3.6005 1.1302 1.5181 11 8 3.7315 -0.9106 2.9104 12 6 1.7962 0.8412 3.4625 13 6 2.5488 1.7442 4.4420 14 6 3.6063 1.0636 5.2723 15 1 4.6371 1.0771 4.9504 16 6 3.2579 0.4238 6.4428 17 7 1.9901 0.2850 6.7641 18 14 4.5864 -0.2459 7.5723 19 1 3.9550 -0.8844 8.7551 20 1 5.3969 -1.2524 6.8408 21 1 5.4635 0.8661 8.0187 22 6 2.8091 3.1896 4.0129 23 6 1.7668 2.8871 5.0925 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 -0.3634 0.5138 -0.8900 27 1 2.1267 -1.8044 -1.1643 28 1 3.3908 0.9972 -1.7893 29 1 3.8416 -0.6000 -2.5942 30 1 1.4568 -0.8565 -3.4196 31 1 1.0060 0.7403 -2.6146 32 1 0.7375 -2.1444 1.9992 33 1 1.5296 -2.5969 0.4707 34 1 2.4629 -2.5819 1.9862 35 1 1.2946 0.0458 4.0137 36 1 1.0564 1.4302 2.9203 37 1 1.3028 0.6898 6.2122 38 1 3.7452 3.6482 4.3312 39 1 2.4438 3.4973 3.0331 40 1 0.7165 2.9960 4.8224 41 1 2.0171 3.1465 6.1211 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000589127805.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:23 Heat of formation + Delta-G solvation = -49.471076 kcal Electronic energy + Delta-G solvation = -22299.759966 eV Core-core repulsion = 19114.525687 eV Total energy + Delta-G solvation = -3185.234279 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 287.134 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.51823 -38.91578 -38.06151 -36.87005 -36.18868 -34.06707 -31.26056 -30.00770 -27.42979 -27.03877 -24.76586 -23.18890 -23.11484 -21.73556 -20.95521 -19.86396 -18.84540 -18.75118 -17.43768 -17.18053 -16.35195 -15.88713 -15.66411 -15.55725 -15.19064 -15.07919 -14.73340 -14.52476 -13.88508 -13.70071 -13.58926 -13.38781 -13.11794 -13.08904 -12.98478 -12.76797 -12.68694 -12.43412 -12.37450 -12.17216 -12.12110 -11.94881 -11.78806 -11.52592 -11.27651 -10.89583 -10.61860 -10.55595 -10.33471 -9.85058 -8.64349 -6.42156 -0.62654 1.50788 1.57863 1.77135 1.85789 2.52554 2.87959 2.94443 3.10400 3.14486 3.29689 3.61577 3.74873 3.93029 3.99911 4.11526 4.18408 4.21487 4.32415 4.37231 4.44922 4.48097 4.58667 4.68001 4.78290 4.78698 4.82758 4.87448 4.97183 4.97751 5.03923 5.13301 5.20968 5.27579 5.30642 5.38635 5.43936 5.73982 5.98763 6.13071 6.62029 7.40759 8.77516 Molecular weight = 287.13amu Principal moments of inertia in cm(-1) A = 0.025035 B = 0.005581 C = 0.005281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1118.171680 B = 5015.843952 C = 5300.681557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.165 3.835 3 H 0.083 0.917 4 C -0.174 4.174 5 C -0.200 4.200 6 C -0.146 4.146 7 N -0.998 5.998 8 C 0.076 3.924 9 S 2.624 3.376 10 O -0.990 6.990 11 O -0.990 6.990 12 C -0.562 4.562 13 C -0.015 4.015 14 C -0.606 4.606 15 H 0.038 0.962 16 C -0.001 4.001 17 N -0.916 5.916 18 Si 1.092 2.908 19 H -0.273 1.273 20 H -0.281 1.281 21 H -0.268 1.268 22 C -0.180 4.180 23 C -0.156 4.156 24 H 0.074 0.926 25 H 0.056 0.944 26 H 0.087 0.913 27 H 0.114 0.886 28 H 0.083 0.917 29 H 0.098 0.902 30 H 0.114 0.886 31 H 0.106 0.894 32 H 0.068 0.932 33 H 0.103 0.897 34 H 0.063 0.937 35 H 0.115 0.885 36 H 0.134 0.866 37 H 0.271 0.729 38 H 0.082 0.918 39 H 0.102 0.898 40 H 0.097 0.903 41 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.593 -1.806 -16.275 17.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.060 3.940 3 H 0.101 0.899 4 C -0.194 4.194 5 C -0.237 4.237 6 C -0.184 4.184 7 N -0.836 5.836 8 C -0.068 4.068 9 S 2.722 3.278 10 O -0.980 6.980 11 O -0.980 6.980 12 C -0.694 4.694 13 C -0.017 4.017 14 C -0.643 4.643 15 H 0.056 0.944 16 C -0.203 4.203 17 N -0.550 5.550 18 Si 0.915 3.085 19 H -0.198 1.198 20 H -0.207 1.207 21 H -0.193 1.193 22 C -0.218 4.218 23 C -0.195 4.195 24 H 0.093 0.907 25 H 0.075 0.925 26 H 0.106 0.894 27 H 0.132 0.868 28 H 0.101 0.899 29 H 0.116 0.884 30 H 0.132 0.868 31 H 0.125 0.875 32 H 0.086 0.914 33 H 0.121 0.879 34 H 0.081 0.919 35 H 0.133 0.867 36 H 0.153 0.847 37 H 0.081 0.919 38 H 0.100 0.900 39 H 0.120 0.880 40 H 0.115 0.885 41 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -5.410 -2.657 -14.910 16.082 hybrid contribution -0.586 0.979 -0.798 1.392 sum -5.996 -1.678 -15.708 16.897 Atomic orbital electron populations 1.22166 0.92518 1.03850 1.03098 1.20654 0.95814 0.95237 0.82343 0.89852 1.22620 1.05211 0.99972 0.91555 1.23120 0.93871 1.01996 1.04741 1.23042 0.96416 1.03472 0.95430 1.57487 1.70333 1.21391 1.34420 1.21703 1.01167 0.80089 1.03866 1.04326 0.75796 0.73674 0.73995 1.93439 1.74032 1.61246 1.69270 1.93465 1.68769 1.57659 1.78101 1.30032 1.14753 1.11185 1.13451 1.18674 0.98405 0.86867 0.97736 1.21564 0.93356 1.39696 1.09682 0.94409 1.26853 1.01351 0.94107 0.98032 1.70849 1.00398 1.40940 1.42832 0.83274 0.73279 0.76986 0.75003 1.19820 1.20696 1.19258 1.23109 1.00388 0.99298 0.98955 1.22753 0.96073 1.03951 0.96739 0.90699 0.92490 0.89390 0.86760 0.89891 0.88368 0.86780 0.87546 0.91388 0.87908 0.91855 0.86687 0.84738 0.91858 0.89956 0.87973 0.88475 0.91274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.82 9.03 71.98 0.65 -2.17 16 2 C 0.16 4.05 2.81 44.99 0.13 4.17 16 3 H 0.08 2.29 6.63 -2.38 -0.02 2.28 16 4 C -0.17 -3.66 5.15 -10.79 -0.06 -3.72 16 5 C -0.20 -4.35 10.18 30.59 0.31 -4.04 16 6 C -0.15 -2.27 9.73 30.59 0.30 -1.97 16 7 N -1.00 -30.24 3.00 -516.52 -1.55 -31.79 16 8 C 0.08 1.95 9.67 127.77 1.24 3.19 16 9 S 2.62 109.85 5.06 -56.49 -0.29 109.56 16 10 O -0.99 -44.31 16.57 -127.65 -2.12 -46.43 16 11 O -0.99 -50.05 16.07 -127.65 -2.05 -52.10 16 12 C -0.56 -23.31 5.98 71.98 0.43 -22.88 16 13 C -0.01 -0.72 0.95 -52.92 -0.05 -0.77 16 14 C -0.61 -34.54 7.88 25.60 0.20 -34.34 16 15 H 0.04 2.26 7.82 -2.91 -0.02 2.24 16 16 C 0.00 -0.04 5.39 84.65 0.46 0.42 16 17 N -0.92 -53.26 13.57 21.45 0.29 -52.97 16 18 Si 1.09 51.73 29.91 68.60 2.05 53.78 16 19 H -0.27 -12.52 7.11 99.48 0.71 -11.81 16 20 H -0.28 -13.21 7.11 99.48 0.71 -12.50 16 21 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 22 C -0.18 -7.75 9.95 30.62 0.30 -7.44 16 23 C -0.16 -6.87 8.74 30.62 0.27 -6.61 16 24 H 0.07 1.17 7.67 -2.38 -0.02 1.15 16 25 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 26 H 0.09 1.19 7.29 -2.38 -0.02 1.17 16 27 H 0.11 2.25 6.59 -2.39 -0.02 2.23 16 28 H 0.08 2.08 8.05 -2.39 -0.02 2.06 16 29 H 0.10 1.96 8.14 -2.39 -0.02 1.94 16 30 H 0.11 1.33 8.14 -2.39 -0.02 1.31 16 31 H 0.11 1.43 7.61 -2.38 -0.02 1.41 16 32 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 33 H 0.10 1.92 6.43 -2.39 -0.02 1.90 16 34 H 0.06 1.91 6.91 -2.39 -0.02 1.89 16 35 H 0.11 4.97 7.79 -2.39 -0.02 4.96 16 36 H 0.13 4.44 8.11 -2.39 -0.02 4.42 16 37 H 0.27 15.34 6.17 -92.71 -0.57 14.77 16 38 H 0.08 3.60 8.14 -2.39 -0.02 3.58 16 39 H 0.10 3.79 8.14 -2.39 -0.02 3.77 16 40 H 0.10 3.68 8.14 -2.39 -0.02 3.66 16 41 H 0.07 3.29 8.14 -2.39 -0.02 3.27 16 Total: -1.00 -72.64 343.15 1.71 -70.93 By element: Atomic # 1 Polarization: 23.98 SS G_CDS: 1.20 Total: 25.18 kcal Atomic # 6 Polarization: -80.33 SS G_CDS: 4.18 Total: -76.16 kcal Atomic # 7 Polarization: -83.50 SS G_CDS: -1.26 Total: -84.76 kcal Atomic # 8 Polarization: -94.36 SS G_CDS: -4.17 Total: -98.53 kcal Atomic # 14 Polarization: 51.73 SS G_CDS: 2.05 Total: 53.78 kcal Atomic # 16 Polarization: 109.85 SS G_CDS: -0.29 Total: 109.56 kcal Total: -72.64 1.71 -70.93 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589127805.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.459 kcal (2) G-P(sol) polarization free energy of solvation -72.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.930 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds