Wall clock time and date at job start Tue Mar 31 2020 06:13:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.47131 * 2 1 4 4 C 1.50700 * 109.47313 * 120.00230 * 2 1 3 5 5 H 1.07997 * 120.00357 * 119.99585 * 4 2 1 6 6 C 1.37876 * 119.99656 * 299.99978 * 4 2 1 7 7 N 1.31512 * 119.99866 * 179.97438 * 6 4 2 8 8 Si 1.86798 * 120.00085 * 359.97438 * 6 4 2 9 9 H 1.48506 * 109.47050 * 90.00069 * 8 6 4 10 10 H 1.48500 * 109.47345 * 209.99734 * 8 6 4 11 11 H 1.48494 * 109.47213 * 330.00170 * 8 6 4 12 12 C 1.50702 * 109.47245 * 240.00111 * 2 1 3 13 13 O 1.21283 * 120.00262 * 240.00295 * 12 2 1 14 14 N 1.34777 * 119.99928 * 59.72201 * 12 2 1 15 15 C 1.46499 * 120.00199 * 180.27479 * 14 12 2 16 16 H 1.09007 * 109.47463 * 325.00619 * 15 14 12 17 17 C 1.53000 * 109.47070 * 85.00207 * 15 14 12 18 18 C 1.50697 * 109.47763 * 205.00186 * 15 14 12 19 19 C 1.33990 * 124.92557 * 139.99586 * 18 15 14 20 20 C 1.46780 * 106.18671 * 179.97438 * 19 18 15 21 21 C 1.39406 * 134.37241 * 180.02562 * 20 19 18 22 22 C 1.36739 * 119.71905 * 179.97438 * 21 20 19 23 23 C 1.38745 * 120.41579 * 359.97438 * 22 21 20 24 24 C 1.37849 * 120.68396 * 0.02768 * 23 22 21 25 25 C 1.38943 * 119.81940 * 359.97277 * 24 23 22 26 26 O 1.34457 * 124.91976 * 319.70339 * 18 15 14 27 27 H 1.08994 * 109.47175 * 300.00017 * 1 2 3 28 28 H 1.09001 * 109.46739 * 59.99706 * 1 2 3 29 29 H 1.08996 * 109.46783 * 179.97438 * 1 2 3 30 30 H 0.97000 * 119.99789 * 179.97438 * 7 6 4 31 31 H 0.97000 * 120.00317 * 0.28382 * 14 12 2 32 32 H 1.08998 * 109.46925 * 59.99877 * 17 15 14 33 33 H 1.08998 * 109.47598 * 180.02562 * 17 15 14 34 34 H 1.09005 * 109.47473 * 300.00173 * 17 15 14 35 35 H 1.08005 * 126.90943 * 359.97276 * 19 18 15 36 36 H 1.07997 * 120.14256 * 359.97438 * 21 20 19 37 37 H 1.07997 * 119.79226 * 180.02562 * 22 21 20 38 38 H 1.07998 * 119.65453 * 180.02562 * 23 22 21 39 39 H 1.08003 * 120.09122 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6532 -1.5886 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 2.1373 -0.8596 3.5565 8 14 0.6259 1.2798 2.6541 9 1 -0.8020 0.8744 2.6992 10 1 0.9772 1.9953 3.9070 11 1 0.8492 2.1772 1.4923 12 6 2.0324 -0.7104 -1.2305 13 8 2.7296 -1.6965 -1.1193 14 7 1.7022 -0.2532 -2.4546 15 6 2.1855 -0.9472 -3.6507 16 1 3.1854 -1.3394 -3.4643 17 6 1.2397 -2.1016 -3.9877 18 6 2.2322 0.0178 -4.8072 19 6 3.2052 0.0663 -5.7271 20 6 2.8404 1.1461 -6.6520 21 6 3.4234 1.6877 -7.7967 22 6 2.8079 2.7215 -8.4466 23 6 1.6079 3.2332 -7.9741 24 6 1.0167 2.7104 -6.8438 25 6 1.6255 1.6598 -6.1686 26 8 1.3005 0.9513 -5.0688 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 1.9032 -0.5280 4.4374 31 1 1.1446 0.5355 -2.5436 32 1 0.2399 -1.7095 -4.1742 33 1 1.5995 -2.6184 -4.8774 34 1 1.2059 -2.7998 -3.1513 35 1 4.0818 -0.5626 -5.7778 36 1 4.3571 1.2926 -8.1686 37 1 3.2582 3.1417 -9.3337 38 1 1.1322 4.0495 -8.4972 39 1 0.0827 3.1164 -6.4842 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596667611.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:13 Heat of formation + Delta-G solvation = -7.490779 kcal Electronic energy + Delta-G solvation = -22001.253945 eV Core-core repulsion = 18682.396117 eV Total energy + Delta-G solvation = -3318.857828 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 287.131 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.67010 -39.19900 -38.09186 -35.36056 -33.84128 -32.94049 -31.55018 -30.63914 -30.30379 -28.61665 -25.13661 -24.53511 -23.14524 -22.72288 -21.65556 -20.82294 -19.45932 -17.56943 -17.35863 -16.77975 -16.36290 -16.19420 -15.47174 -15.20444 -14.66225 -14.28135 -14.21734 -13.89502 -13.50833 -13.26385 -13.13852 -12.99276 -12.54616 -12.41571 -12.28088 -12.18952 -11.94887 -11.57562 -11.43535 -11.18188 -10.96883 -10.61810 -10.33273 -10.27695 -9.63964 -9.10658 -8.87850 -8.77814 -8.73412 -8.57621 -8.33112 -6.05268 -4.05668 0.67568 1.13465 2.13638 2.46080 3.23737 3.31943 3.36943 3.48658 3.50502 3.62925 4.15876 4.38101 4.44099 4.69281 4.87112 4.92128 5.02947 5.11772 5.18214 5.24922 5.28035 5.46528 5.60280 5.62467 5.76242 5.93909 5.96835 6.01657 6.12223 6.18349 6.19728 6.23920 6.31347 6.41955 6.44695 6.71856 6.78221 7.03563 7.15485 7.53205 8.04297 8.53864 9.00730 9.14279 9.53657 11.07651 Molecular weight = 287.13amu Principal moments of inertia in cm(-1) A = 0.025960 B = 0.003633 C = 0.003382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1078.303400 B = 7706.185850 C = 8276.531730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.004 4.004 3 H 0.053 0.947 4 C -0.506 4.506 5 H 0.094 0.906 6 C 0.071 3.929 7 N -0.896 5.896 8 Si 0.884 3.116 9 H -0.278 1.278 10 H -0.295 1.295 11 H -0.267 1.267 12 C 0.532 3.468 13 O -0.528 6.528 14 N -0.744 5.744 15 C 0.220 3.780 16 H 0.117 0.883 17 C -0.162 4.162 18 C 0.041 3.959 19 C -0.201 4.201 20 C -0.127 4.127 21 C -0.072 4.072 22 C -0.138 4.138 23 C -0.098 4.098 24 C -0.105 4.105 25 C 0.052 3.948 26 O -0.188 6.188 27 H 0.049 0.951 28 H 0.033 0.967 29 H 0.058 0.942 30 H 0.264 0.736 31 H 0.400 0.600 32 H 0.061 0.939 33 H 0.066 0.934 34 H 0.078 0.922 35 H 0.161 0.839 36 H 0.127 0.873 37 H 0.128 0.872 38 H 0.134 0.866 39 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.175 7.039 -24.479 25.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.026 4.026 3 H 0.070 0.930 4 C -0.544 4.544 5 H 0.112 0.888 6 C -0.131 4.131 7 N -0.534 5.534 8 Si 0.714 3.286 9 H -0.205 1.205 10 H -0.223 1.223 11 H -0.193 1.193 12 C 0.321 3.679 13 O -0.402 6.402 14 N -0.399 5.399 15 C 0.115 3.885 16 H 0.135 0.865 17 C -0.220 4.220 18 C -0.007 4.007 19 C -0.221 4.221 20 C -0.128 4.128 21 C -0.090 4.090 22 C -0.156 4.156 23 C -0.116 4.116 24 C -0.124 4.124 25 C 0.005 3.995 26 O -0.089 6.089 27 H 0.068 0.932 28 H 0.052 0.948 29 H 0.077 0.923 30 H 0.075 0.925 31 H 0.235 0.765 32 H 0.080 0.920 33 H 0.085 0.915 34 H 0.097 0.903 35 H 0.178 0.822 36 H 0.145 0.855 37 H 0.146 0.854 38 H 0.151 0.849 39 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -1.884 6.332 -24.000 24.893 hybrid contribution -0.794 1.224 0.064 1.460 sum -2.678 7.556 -23.936 25.243 Atomic orbital electron populations 1.22117 0.97233 1.01566 0.99312 1.19317 0.93284 0.97602 0.92353 0.92954 1.20935 1.32166 1.14143 0.87189 0.88800 1.24973 0.95810 0.96549 0.95757 1.69879 1.45459 1.40163 0.97873 0.86921 0.80722 0.83854 0.77104 1.20488 1.22292 1.19254 1.21335 0.78598 0.84253 0.83694 1.90585 1.37135 1.26135 1.86332 1.46359 1.55710 1.32933 1.04918 1.19524 1.01145 0.88349 0.79479 0.86492 1.22229 0.99356 0.97780 1.02674 1.22632 0.88373 0.91480 0.98228 1.22230 1.01755 1.01614 0.96492 1.19951 0.96295 0.98473 0.98051 1.20295 0.99577 0.95848 0.93293 1.20771 0.96272 0.97688 1.00886 1.20916 0.95674 0.99734 0.95269 1.19972 1.01248 0.95212 0.95950 1.19660 0.95695 0.96036 0.88149 1.83941 1.44641 1.40593 1.39742 0.93239 0.94792 0.92290 0.92549 0.76524 0.92034 0.91529 0.90316 0.82168 0.85531 0.85431 0.84862 0.85014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.98 8.57 37.16 0.32 -2.66 16 2 C 0.00 -0.09 2.23 -92.92 -0.21 -0.30 16 3 H 0.05 1.20 7.20 -51.93 -0.37 0.83 16 4 C -0.51 -14.60 8.96 -34.44 -0.31 -14.91 16 5 H 0.09 3.07 7.00 -52.49 -0.37 2.70 16 6 C 0.07 2.05 5.45 -17.82 -0.10 1.95 16 7 N -0.90 -27.70 13.96 55.43 0.77 -26.92 16 8 Si 0.88 21.40 24.37 -169.99 -4.14 17.25 16 9 H -0.28 -6.51 6.87 56.52 0.39 -6.12 16 10 H -0.30 -7.21 7.11 56.52 0.40 -6.81 16 11 H -0.27 -6.05 6.53 56.52 0.37 -5.68 16 12 C 0.53 11.45 7.12 -10.98 -0.08 11.37 16 13 O -0.53 -13.14 15.12 5.55 0.08 -13.05 16 14 N -0.74 -12.35 4.96 -54.93 -0.27 -12.62 16 15 C 0.22 3.13 3.01 -69.08 -0.21 2.92 16 16 H 0.12 1.73 7.55 -51.93 -0.39 1.34 16 17 C -0.16 -2.08 9.47 37.16 0.35 -1.73 16 18 C 0.04 0.54 6.05 -35.80 -0.22 0.32 16 19 C -0.20 -2.41 10.99 -37.62 -0.41 -2.83 16 20 C -0.13 -1.52 6.40 -105.16 -0.67 -2.19 16 21 C -0.07 -0.69 10.05 -39.69 -0.40 -1.09 16 22 C -0.14 -1.12 9.98 -39.94 -0.40 -1.52 16 23 C -0.10 -0.80 10.01 -39.54 -0.40 -1.19 16 24 C -0.11 -1.05 10.07 -39.46 -0.40 -1.45 16 25 C 0.05 0.65 7.42 -38.47 -0.29 0.37 16 26 O -0.19 -2.56 10.19 3.90 0.04 -2.52 16 27 H 0.05 1.07 3.27 -51.93 -0.17 0.90 16 28 H 0.03 0.56 7.55 -51.93 -0.39 0.17 16 29 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 30 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 31 H 0.40 5.99 7.69 -40.82 -0.31 5.68 16 32 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 33 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 35 H 0.16 1.56 8.06 -52.48 -0.42 1.14 16 36 H 0.13 0.95 8.06 -52.49 -0.42 0.52 16 37 H 0.13 0.70 8.06 -52.49 -0.42 0.28 16 38 H 0.13 0.70 8.06 -52.49 -0.42 0.28 16 39 H 0.13 1.07 8.06 -52.48 -0.42 0.65 16 LS Contribution 326.30 15.07 4.92 4.92 Total: -1.00 -33.60 326.30 -7.00 -40.60 By element: Atomic # 1 Polarization: 10.28 SS G_CDS: -5.00 Total: 5.28 kcal Atomic # 6 Polarization: -9.53 SS G_CDS: -3.41 Total: -12.94 kcal Atomic # 7 Polarization: -40.05 SS G_CDS: 0.50 Total: -39.55 kcal Atomic # 8 Polarization: -15.70 SS G_CDS: 0.12 Total: -15.57 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -4.14 Total: 17.25 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -33.60 -7.00 -40.60 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596667611.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.113 kcal (2) G-P(sol) polarization free energy of solvation -33.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.604 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds