Wall clock time and date at job start Tue Mar 31 2020 06:13:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.47131 * 2 1 4 4 C 1.50700 * 109.47313 * 120.00230 * 2 1 3 5 5 H 1.07997 * 120.00357 * 119.99585 * 4 2 1 6 6 C 1.37876 * 119.99656 * 299.99978 * 4 2 1 7 7 N 1.31512 * 119.99866 * 179.97438 * 6 4 2 8 8 Si 1.86798 * 120.00085 * 359.97438 * 6 4 2 9 9 H 1.48506 * 109.47050 * 90.00069 * 8 6 4 10 10 H 1.48500 * 109.47345 * 209.99734 * 8 6 4 11 11 H 1.48494 * 109.47213 * 330.00170 * 8 6 4 12 12 C 1.50702 * 109.47245 * 240.00111 * 2 1 3 13 13 O 1.21283 * 120.00262 * 240.00295 * 12 2 1 14 14 N 1.34777 * 119.99928 * 59.72201 * 12 2 1 15 15 C 1.46499 * 120.00199 * 180.27479 * 14 12 2 16 16 H 1.09007 * 109.47463 * 325.00619 * 15 14 12 17 17 C 1.53000 * 109.47070 * 85.00207 * 15 14 12 18 18 C 1.50697 * 109.47763 * 205.00186 * 15 14 12 19 19 C 1.33990 * 124.92557 * 139.99586 * 18 15 14 20 20 C 1.46780 * 106.18671 * 179.97438 * 19 18 15 21 21 C 1.39406 * 134.37241 * 180.02562 * 20 19 18 22 22 C 1.36739 * 119.71905 * 179.97438 * 21 20 19 23 23 C 1.38745 * 120.41579 * 359.97438 * 22 21 20 24 24 C 1.37849 * 120.68396 * 0.02768 * 23 22 21 25 25 C 1.38943 * 119.81940 * 359.97277 * 24 23 22 26 26 O 1.34457 * 124.91976 * 319.70339 * 18 15 14 27 27 H 1.08994 * 109.47175 * 300.00017 * 1 2 3 28 28 H 1.09001 * 109.46739 * 59.99706 * 1 2 3 29 29 H 1.08996 * 109.46783 * 179.97438 * 1 2 3 30 30 H 0.97000 * 119.99789 * 179.97438 * 7 6 4 31 31 H 0.97000 * 120.00317 * 0.28382 * 14 12 2 32 32 H 1.08998 * 109.46925 * 59.99877 * 17 15 14 33 33 H 1.08998 * 109.47598 * 180.02562 * 17 15 14 34 34 H 1.09005 * 109.47473 * 300.00173 * 17 15 14 35 35 H 1.08005 * 126.90943 * 359.97276 * 19 18 15 36 36 H 1.07997 * 120.14256 * 359.97438 * 21 20 19 37 37 H 1.07997 * 119.79226 * 180.02562 * 22 21 20 38 38 H 1.07998 * 119.65453 * 180.02562 * 23 22 21 39 39 H 1.08003 * 120.09122 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6532 -1.5886 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 2.1373 -0.8596 3.5565 8 14 0.6259 1.2798 2.6541 9 1 -0.8020 0.8744 2.6992 10 1 0.9772 1.9953 3.9070 11 1 0.8492 2.1772 1.4923 12 6 2.0324 -0.7104 -1.2305 13 8 2.7296 -1.6965 -1.1193 14 7 1.7022 -0.2532 -2.4546 15 6 2.1855 -0.9472 -3.6507 16 1 3.1854 -1.3394 -3.4643 17 6 1.2397 -2.1016 -3.9877 18 6 2.2322 0.0178 -4.8072 19 6 3.2052 0.0663 -5.7271 20 6 2.8404 1.1461 -6.6520 21 6 3.4234 1.6877 -7.7967 22 6 2.8079 2.7215 -8.4466 23 6 1.6079 3.2332 -7.9741 24 6 1.0167 2.7104 -6.8438 25 6 1.6255 1.6598 -6.1686 26 8 1.3005 0.9513 -5.0688 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 1.9032 -0.5280 4.4374 31 1 1.1446 0.5355 -2.5436 32 1 0.2399 -1.7095 -4.1742 33 1 1.5995 -2.6184 -4.8774 34 1 1.2059 -2.7998 -3.1513 35 1 4.0818 -0.5626 -5.7778 36 1 4.3571 1.2926 -8.1686 37 1 3.2582 3.1417 -9.3337 38 1 1.1322 4.0495 -8.4972 39 1 0.0827 3.1164 -6.4842 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596667611.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:13 Heat of formation + Delta-G solvation = -30.233062 kcal Electronic energy + Delta-G solvation = -22002.240125 eV Core-core repulsion = 18682.396117 eV Total energy + Delta-G solvation = -3319.844008 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 287.131 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -43.53742 -40.81164 -38.86284 -36.72088 -35.80199 -33.97330 -33.37759 -31.66140 -31.35016 -29.51710 -27.12946 -25.76417 -24.37696 -23.74996 -22.57681 -21.83900 -21.08018 -18.86377 -18.54711 -18.31403 -17.55202 -17.25421 -16.92565 -16.50276 -15.98259 -15.89986 -15.14300 -14.93263 -14.89066 -14.64707 -14.39079 -14.10057 -14.04358 -13.76543 -13.43393 -13.20366 -13.08114 -12.85810 -12.74756 -12.55258 -12.51361 -12.14876 -11.87310 -11.48697 -11.23272 -11.14873 -10.78658 -10.52413 -10.20591 -9.59898 -9.16280 -8.27595 -6.35324 -0.09609 0.39757 1.24764 1.32963 1.39334 1.50237 1.55770 1.81344 2.24093 2.33880 2.77817 3.05996 3.22711 3.69651 3.93189 3.98410 4.09071 4.13156 4.16326 4.25325 4.39626 4.40701 4.52868 4.58884 4.63450 4.70124 4.71455 4.84711 4.91770 5.00122 5.11416 5.22721 5.33636 5.36788 5.42571 5.45961 5.50964 5.52297 5.75813 6.16719 6.24189 6.59155 6.81427 7.24974 7.40709 8.89962 Molecular weight = 287.13amu Principal moments of inertia in cm(-1) A = 0.025960 B = 0.003633 C = 0.003382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1078.303400 B = 7706.185850 C = 8276.531730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.009 4.009 3 H 0.066 0.934 4 C -0.521 4.521 5 H 0.034 0.966 6 C 0.008 3.992 7 N -0.951 5.951 8 Si 0.957 3.043 9 H -0.260 1.260 10 H -0.299 1.299 11 H -0.234 1.234 12 C 0.534 3.466 13 O -0.574 6.574 14 N -0.723 5.723 15 C 0.222 3.778 16 H 0.107 0.893 17 C -0.155 4.155 18 C 0.022 3.978 19 C -0.195 4.195 20 C -0.152 4.152 21 C -0.081 4.081 22 C -0.135 4.135 23 C -0.088 4.088 24 C -0.120 4.120 25 C 0.026 3.974 26 O -0.201 6.201 27 H 0.046 0.954 28 H 0.081 0.919 29 H 0.049 0.951 30 H 0.267 0.733 31 H 0.412 0.588 32 H 0.068 0.932 33 H 0.089 0.911 34 H 0.055 0.945 35 H 0.176 0.824 36 H 0.145 0.855 37 H 0.160 0.840 38 H 0.167 0.833 39 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.715 10.143 -27.756 29.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.030 4.030 3 H 0.084 0.916 4 C -0.559 4.559 5 H 0.052 0.948 6 C -0.188 4.188 7 N -0.591 5.591 8 Si 0.782 3.218 9 H -0.185 1.185 10 H -0.227 1.227 11 H -0.158 1.158 12 C 0.323 3.677 13 O -0.451 6.451 14 N -0.377 5.377 15 C 0.117 3.883 16 H 0.125 0.875 17 C -0.213 4.213 18 C -0.026 4.026 19 C -0.214 4.214 20 C -0.153 4.153 21 C -0.099 4.099 22 C -0.153 4.153 23 C -0.106 4.106 24 C -0.139 4.139 25 C -0.021 4.021 26 O -0.103 6.103 27 H 0.065 0.935 28 H 0.099 0.901 29 H 0.068 0.932 30 H 0.076 0.924 31 H 0.248 0.752 32 H 0.087 0.913 33 H 0.108 0.892 34 H 0.074 0.926 35 H 0.194 0.806 36 H 0.163 0.837 37 H 0.177 0.823 38 H 0.185 0.815 39 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -3.444 9.458 -27.348 29.142 hybrid contribution -0.213 0.256 0.910 0.969 sum -3.657 9.714 -26.438 28.403 Atomic orbital electron populations 1.22015 0.94447 1.01812 1.01402 1.19266 0.95458 0.97426 0.90890 0.91584 1.21088 1.31688 1.12931 0.90191 0.94805 1.25990 0.97406 1.00580 0.94853 1.70068 1.47618 1.42738 0.98721 0.85734 0.78932 0.79155 0.77932 1.18534 1.22668 1.15772 1.21011 0.78236 0.83628 0.84812 1.90574 1.39326 1.28146 1.87103 1.46058 1.54620 1.32811 1.04259 1.19540 1.00868 0.89040 0.78817 0.87543 1.22160 0.99573 0.96886 1.02704 1.22270 0.89417 0.92409 0.98514 1.22534 1.01555 1.01394 0.95966 1.20214 0.96825 0.99019 0.99243 1.20648 1.00388 0.96220 0.92631 1.21226 0.96004 0.96677 1.01371 1.21405 0.95333 0.99663 0.94197 1.20353 1.02085 0.94882 0.96551 1.20153 0.96622 0.97032 0.88314 1.83874 1.44923 1.40957 1.40594 0.93546 0.90050 0.93170 0.92363 0.75170 0.91255 0.89183 0.92599 0.80629 0.83724 0.82273 0.81528 0.83627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.41 8.57 71.98 0.62 -4.80 16 2 C -0.01 -0.41 2.23 -12.29 -0.03 -0.44 16 3 H 0.07 2.90 7.20 -2.38 -0.02 2.88 16 4 C -0.52 -31.27 8.96 25.60 0.23 -31.04 16 5 H 0.03 2.38 7.00 -2.91 -0.02 2.36 16 6 C 0.01 0.49 5.45 84.65 0.46 0.95 16 7 N -0.95 -61.33 13.96 21.45 0.30 -61.03 16 8 Si 0.96 43.57 24.37 68.60 1.67 45.24 16 9 H -0.26 -11.03 6.87 99.48 0.68 -10.35 16 10 H -0.30 -13.70 7.11 99.48 0.71 -12.99 16 11 H -0.23 -9.37 6.53 99.48 0.65 -8.72 16 12 C 0.53 23.36 7.12 87.66 0.62 23.98 16 13 O -0.57 -30.08 15.12 -3.04 -0.05 -30.12 16 14 N -0.72 -23.57 4.96 -446.09 -2.21 -25.78 16 15 C 0.22 6.27 3.01 44.24 0.13 6.40 16 16 H 0.11 3.25 7.55 -2.38 -0.02 3.23 16 17 C -0.16 -3.91 9.47 71.98 0.68 -3.23 16 18 C 0.02 0.55 6.05 24.72 0.15 0.70 16 19 C -0.20 -4.49 10.99 23.54 0.26 -4.23 16 20 C -0.15 -3.41 6.40 -20.21 -0.13 -3.53 16 21 C -0.08 -1.34 10.05 22.20 0.22 -1.12 16 22 C -0.14 -1.68 9.98 22.04 0.22 -1.46 16 23 C -0.09 -1.10 10.01 22.30 0.22 -0.87 16 24 C -0.12 -2.10 10.07 22.35 0.23 -1.88 16 25 C 0.03 0.61 7.42 22.99 0.17 0.78 16 26 O -0.20 -5.26 10.19 -8.96 -0.09 -5.35 16 27 H 0.05 1.83 3.27 -2.39 -0.01 1.83 16 28 H 0.08 2.38 7.55 -2.39 -0.02 2.36 16 29 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 30 H 0.27 15.96 8.31 -92.71 -0.77 15.19 16 31 H 0.41 11.53 7.69 -92.71 -0.71 10.82 16 32 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 33 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 34 H 0.05 1.67 8.14 -2.38 -0.02 1.65 16 35 H 0.18 3.24 8.06 -2.91 -0.02 3.21 16 36 H 0.14 1.75 8.06 -2.91 -0.02 1.72 16 37 H 0.16 0.95 8.06 -2.91 -0.02 0.92 16 38 H 0.17 0.91 8.06 -2.91 -0.02 0.89 16 39 H 0.15 2.00 8.06 -2.91 -0.02 1.97 16 Total: -1.00 -78.38 326.30 3.96 -74.42 By element: Atomic # 1 Polarization: 22.11 SS G_CDS: 0.28 Total: 22.39 kcal Atomic # 6 Polarization: -23.83 SS G_CDS: 4.06 Total: -19.78 kcal Atomic # 7 Polarization: -84.90 SS G_CDS: -1.91 Total: -86.81 kcal Atomic # 8 Polarization: -35.34 SS G_CDS: -0.14 Total: -35.47 kcal Atomic # 14 Polarization: 43.57 SS G_CDS: 1.67 Total: 45.24 kcal Total: -78.38 3.96 -74.42 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596667611.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.190 kcal (2) G-P(sol) polarization free energy of solvation -78.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.423 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds