Wall clock time and date at job start Tue Mar 31 2020 06:17:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08996 * 109.46830 * 2 1 4 4 C 1.52999 * 109.47161 * 240.00014 * 2 1 3 5 5 O 1.42895 * 109.46978 * 66.79744 * 4 2 1 6 6 C 1.53002 * 109.46945 * 120.00084 * 2 1 3 7 7 H 1.09002 * 109.58599 * 308.09818 * 6 2 1 8 8 C 1.53190 * 109.70214 * 68.45714 * 6 2 1 9 9 C 1.53045 * 109.31071 * 174.49169 * 8 6 2 10 10 C 1.53076 * 109.65737 * 298.69655 * 9 8 6 11 11 C 1.53192 * 109.29371 * 61.15473 * 10 9 8 12 12 N 1.46922 * 108.89378 * 305.57603 * 11 10 9 13 13 C 1.34773 * 120.63330 * 233.51459 * 12 11 10 14 14 O 1.21287 * 120.00052 * 176.36052 * 13 12 11 15 15 C 1.50704 * 120.00160 * 356.36126 * 13 12 11 16 16 S 1.80994 * 109.47235 * 179.97438 * 15 13 12 17 17 C 1.76200 * 99.99777 * 179.97438 * 16 15 13 18 18 H 1.07994 * 120.00133 * 0.02562 * 17 16 15 19 19 C 1.38807 * 120.00026 * 180.02562 * 17 16 15 20 20 N 1.31636 * 119.99642 * 0.02562 * 19 17 16 21 21 Si 1.86796 * 120.00300 * 180.02562 * 19 17 16 22 22 H 1.48505 * 109.46719 * 0.02562 * 21 19 17 23 23 H 1.48496 * 109.47094 * 120.00192 * 21 19 17 24 24 H 1.48495 * 109.46995 * 240.00241 * 21 19 17 25 25 H 1.09001 * 109.47296 * 54.93946 * 1 2 3 26 26 H 1.08997 * 109.47099 * 174.94144 * 1 2 3 27 27 H 1.09001 * 109.47164 * 294.93909 * 1 2 3 28 28 H 1.08991 * 109.47108 * 186.79799 * 4 2 1 29 29 H 1.09006 * 109.47027 * 306.80052 * 4 2 1 30 30 H 0.96705 * 114.00286 * 180.02562 * 5 4 2 31 31 H 1.08996 * 109.50180 * 294.43833 * 8 6 2 32 32 H 1.08995 * 109.50133 * 54.50731 * 8 6 2 33 33 H 1.08995 * 109.46187 * 58.64986 * 9 8 6 34 34 H 1.08999 * 109.46224 * 178.61442 * 9 8 6 35 35 H 1.08999 * 109.39222 * 301.28166 * 10 9 8 36 36 H 1.09004 * 109.62216 * 181.16973 * 10 9 8 37 37 H 1.09000 * 109.58652 * 185.72222 * 11 10 9 38 38 H 1.09004 * 109.58974 * 65.43545 * 11 10 9 39 39 H 1.08997 * 109.47115 * 299.99896 * 15 13 12 40 40 H 1.09010 * 109.46671 * 60.00126 * 15 13 12 41 41 H 0.97001 * 119.99645 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2492 5 8 1.6984 0.0381 -2.4105 6 6 2.0400 -0.7213 1.2493 7 1 1.5644 -0.2993 2.1346 8 6 1.7128 -2.2147 1.1531 9 6 2.3453 -2.9487 2.3378 10 6 3.8664 -2.7837 2.2932 11 6 4.2175 -1.2963 2.3987 12 7 3.4972 -0.5619 1.3497 13 6 4.1603 0.2431 0.4960 14 8 3.5645 0.7922 -0.4065 15 6 5.6422 0.4609 0.6628 16 16 6.2363 1.5819 -0.6279 17 6 7.9449 1.6580 -0.2044 18 1 8.3168 1.0999 0.6421 19 6 8.8130 2.4353 -0.9586 20 7 8.3596 3.1160 -1.9901 21 14 10.6245 2.5155 -0.5101 22 1 10.8775 1.6655 0.6811 23 1 11.4390 2.0240 -1.6503 24 1 10.9972 3.9201 -0.2047 25 1 -0.3634 0.5903 -0.8412 26 1 -0.3633 -1.0236 -0.0906 27 1 -0.3633 0.4333 0.9318 28 1 3.1231 -0.8278 -1.1905 29 1 1.5807 -1.7078 -1.3122 30 1 1.9910 -0.3607 -3.2414 31 1 0.6318 -2.3526 1.1749 32 1 2.1119 -2.6154 0.2213 33 1 1.9639 -2.5308 3.2694 34 1 2.0934 -4.0079 2.2852 35 1 4.2462 -3.1812 1.3520 36 1 4.3178 -3.3240 3.1254 37 1 5.2912 -1.1640 2.2657 38 1 3.9214 -0.9194 3.3777 39 1 5.8372 0.8979 1.6421 40 1 6.1612 -0.4942 0.5812 41 1 8.9662 3.6595 -2.5170 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000598021096.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:17 Heat of formation + Delta-G solvation = -67.723076 kcal Electronic energy + Delta-G solvation = -21935.469151 eV Core-core repulsion = 18749.443406 eV Total energy + Delta-G solvation = -3186.025745 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 287.134 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.75161 -37.23063 -36.64135 -34.06664 -32.80352 -32.42133 -29.66754 -29.03578 -25.98874 -25.51498 -24.84933 -23.73531 -21.09574 -20.27061 -18.70775 -17.55977 -17.04925 -16.40495 -15.81927 -15.62426 -14.88436 -14.80312 -14.53703 -14.24858 -13.98878 -13.61118 -13.39096 -13.09062 -13.04766 -12.64608 -12.46453 -12.33044 -11.98112 -11.81461 -11.42802 -11.13086 -11.08777 -11.05566 -10.97565 -10.76375 -10.75283 -10.49901 -10.23008 -9.78028 -9.35397 -9.06605 -8.54680 -8.27213 -8.19855 -6.48499 -6.21393 -3.91367 2.94545 3.05101 3.21279 3.26159 3.30939 3.61071 4.20635 4.45045 4.63295 4.67685 4.75254 4.92481 5.03146 5.13821 5.16679 5.21392 5.31618 5.38737 5.51825 5.55143 5.62491 5.62988 5.71937 5.75536 5.82139 5.83542 5.90810 5.91955 5.96398 6.07868 6.13623 6.19841 6.28374 6.44361 6.56407 6.93708 7.59736 7.62495 8.08300 8.35604 8.63686 9.24135 10.85971 Molecular weight = 287.13amu Principal moments of inertia in cm(-1) A = 0.021818 B = 0.004722 C = 0.004059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1283.052692 B = 5928.522821 C = 6897.285094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.096 4.096 3 H 0.123 0.877 4 C 0.101 3.899 5 O -0.564 6.564 6 C 0.157 3.843 7 H 0.072 0.928 8 C -0.138 4.138 9 C -0.118 4.118 10 C -0.136 4.136 11 C 0.108 3.892 12 N -0.617 5.617 13 C 0.522 3.478 14 O -0.489 6.489 15 C -0.152 4.152 16 S -0.058 6.058 17 C -0.535 4.535 18 H 0.072 0.928 19 C 0.074 3.926 20 N -0.867 5.867 21 Si 0.917 3.083 22 H -0.272 1.272 23 H -0.280 1.280 24 H -0.280 1.280 25 H 0.062 0.938 26 H 0.045 0.955 27 H 0.048 0.952 28 H 0.058 0.942 29 H 0.017 0.983 30 H 0.370 0.630 31 H 0.073 0.927 32 H 0.070 0.930 33 H 0.062 0.938 34 H 0.062 0.938 35 H 0.067 0.933 36 H 0.073 0.927 37 H 0.089 0.911 38 H 0.065 0.935 39 H 0.087 0.913 40 H 0.085 0.915 41 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.599 -12.891 8.733 20.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.114 4.114 3 H 0.141 0.859 4 C 0.024 3.976 5 O -0.368 6.368 6 C 0.054 3.946 7 H 0.090 0.910 8 C -0.176 4.176 9 C -0.156 4.156 10 C -0.174 4.174 11 C -0.015 4.015 12 N -0.353 5.353 13 C 0.310 3.690 14 O -0.364 6.364 15 C -0.303 4.303 16 S 0.169 5.831 17 C -0.683 4.683 18 H 0.090 0.910 19 C -0.135 4.135 20 N -0.502 5.502 21 Si 0.744 3.256 22 H -0.196 1.196 23 H -0.206 1.206 24 H -0.206 1.206 25 H 0.081 0.919 26 H 0.064 0.936 27 H 0.067 0.933 28 H 0.076 0.924 29 H 0.035 0.965 30 H 0.215 0.785 31 H 0.092 0.908 32 H 0.089 0.911 33 H 0.081 0.919 34 H 0.081 0.919 35 H 0.086 0.914 36 H 0.092 0.908 37 H 0.107 0.893 38 H 0.084 0.916 39 H 0.105 0.895 40 H 0.104 0.896 41 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -13.693 -11.548 7.707 19.500 hybrid contribution 2.190 -1.132 1.068 2.686 sum -11.503 -12.679 8.775 19.238 Atomic orbital electron populations 1.21912 0.95926 1.01062 1.01524 1.21758 0.94158 1.03935 0.91590 0.85904 1.22389 0.98957 0.90915 0.85322 1.86454 1.82108 1.52144 1.16096 1.21244 0.80027 0.94967 0.98362 0.91043 1.22123 1.00902 0.95331 0.99218 1.21513 0.95322 1.00252 0.98504 1.21932 0.96492 0.96252 1.02733 1.21699 0.97796 0.91214 0.90820 1.48114 1.06981 1.46780 1.33453 1.20292 0.89071 0.78513 0.81081 1.90796 1.67057 1.47477 1.31072 1.23611 0.94356 1.05518 1.06796 1.85399 1.06923 1.56537 1.34287 1.22908 0.93446 1.34115 1.17879 0.91003 1.24983 0.99387 0.94634 0.94534 1.70032 1.35584 1.27839 1.16795 0.86137 0.82970 0.78067 0.78448 1.19643 1.20586 1.20562 0.91914 0.93570 0.93305 0.92410 0.96521 0.78463 0.90841 0.91114 0.91911 0.91878 0.91410 0.90798 0.89263 0.91623 0.89511 0.89644 0.92260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.80 8.76 37.16 0.33 -1.47 16 2 C -0.10 -1.42 1.86 -90.62 -0.17 -1.58 16 3 H 0.12 2.29 5.75 -53.04 -0.30 1.98 16 4 C 0.10 1.58 4.36 37.16 0.16 1.74 16 5 O -0.56 -9.44 13.30 -43.45 -0.58 -10.02 16 6 C 0.16 1.95 2.63 -67.60 -0.18 1.77 16 7 H 0.07 0.82 8.13 -51.93 -0.42 0.40 16 8 C -0.14 -1.37 4.67 -26.61 -0.12 -1.49 16 9 C -0.12 -0.98 5.88 -26.67 -0.16 -1.14 16 10 C -0.14 -1.21 6.09 -26.59 -0.16 -1.38 16 11 C 0.11 1.17 6.33 -3.71 -0.02 1.15 16 12 N -0.62 -8.58 2.93 -165.21 -0.48 -9.06 16 13 C 0.52 9.54 6.61 -10.98 -0.07 9.47 16 14 O -0.49 -10.33 9.27 -2.67 -0.02 -10.35 16 15 C -0.15 -3.05 4.53 36.01 0.16 -2.89 16 16 S -0.06 -1.56 20.57 -107.50 -2.21 -3.77 16 17 C -0.54 -15.18 9.50 30.94 0.29 -14.89 16 18 H 0.07 1.94 7.80 -52.49 -0.41 1.53 16 19 C 0.07 2.10 5.49 -17.43 -0.10 2.01 16 20 N -0.87 -26.13 13.22 55.49 0.73 -25.40 16 21 Si 0.92 21.37 29.55 -169.99 -5.02 16.35 16 22 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 23 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 24 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 25 H 0.06 0.85 8.00 -51.93 -0.42 0.43 16 26 H 0.05 0.50 7.07 -51.93 -0.37 0.13 16 27 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 28 H 0.06 1.04 5.32 -51.93 -0.28 0.76 16 29 H 0.02 0.23 6.65 -51.93 -0.35 -0.12 16 30 H 0.37 4.72 9.12 45.56 0.42 5.14 16 31 H 0.07 0.64 7.09 -51.93 -0.37 0.28 16 32 H 0.07 0.78 6.17 -51.93 -0.32 0.46 16 33 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 36 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.09 1.00 5.95 -51.93 -0.31 0.70 16 38 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.09 1.64 8.07 -51.92 -0.42 1.23 16 40 H 0.09 1.60 7.54 -51.91 -0.39 1.21 16 41 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 LS Contribution 326.69 15.07 4.92 4.92 Total: -1.00 -33.48 326.69 -8.31 -41.79 By element: Atomic # 1 Polarization: 9.87 SS G_CDS: -5.60 Total: 4.26 kcal Atomic # 6 Polarization: -8.68 SS G_CDS: -0.04 Total: -8.72 kcal Atomic # 7 Polarization: -34.71 SS G_CDS: 0.25 Total: -34.46 kcal Atomic # 8 Polarization: -19.77 SS G_CDS: -0.60 Total: -20.37 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Atomic # 16 Polarization: -1.56 SS G_CDS: -2.21 Total: -3.77 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -33.48 -8.31 -41.79 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598021096.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.935 kcal (2) G-P(sol) polarization free energy of solvation -33.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.788 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds