Wall clock time and date at job start Tue Mar 31 2020 06:17:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08996 * 109.46830 * 2 1 4 4 C 1.52999 * 109.47161 * 240.00014 * 2 1 3 5 5 O 1.42895 * 109.46978 * 66.79744 * 4 2 1 6 6 C 1.53002 * 109.46945 * 120.00084 * 2 1 3 7 7 H 1.09002 * 109.58599 * 308.09818 * 6 2 1 8 8 C 1.53190 * 109.70214 * 68.45714 * 6 2 1 9 9 C 1.53045 * 109.31071 * 174.49169 * 8 6 2 10 10 C 1.53076 * 109.65737 * 298.69655 * 9 8 6 11 11 C 1.53192 * 109.29371 * 61.15473 * 10 9 8 12 12 N 1.46922 * 108.89378 * 305.57603 * 11 10 9 13 13 C 1.34773 * 120.63330 * 233.51459 * 12 11 10 14 14 O 1.21287 * 120.00052 * 176.36052 * 13 12 11 15 15 C 1.50704 * 120.00160 * 356.36126 * 13 12 11 16 16 S 1.80994 * 109.47235 * 179.97438 * 15 13 12 17 17 C 1.76200 * 99.99777 * 179.97438 * 16 15 13 18 18 H 1.07994 * 120.00133 * 0.02562 * 17 16 15 19 19 C 1.38807 * 120.00026 * 180.02562 * 17 16 15 20 20 N 1.31636 * 119.99642 * 0.02562 * 19 17 16 21 21 Si 1.86796 * 120.00300 * 180.02562 * 19 17 16 22 22 H 1.48505 * 109.46719 * 0.02562 * 21 19 17 23 23 H 1.48496 * 109.47094 * 120.00192 * 21 19 17 24 24 H 1.48495 * 109.46995 * 240.00241 * 21 19 17 25 25 H 1.09001 * 109.47296 * 54.93946 * 1 2 3 26 26 H 1.08997 * 109.47099 * 174.94144 * 1 2 3 27 27 H 1.09001 * 109.47164 * 294.93909 * 1 2 3 28 28 H 1.08991 * 109.47108 * 186.79799 * 4 2 1 29 29 H 1.09006 * 109.47027 * 306.80052 * 4 2 1 30 30 H 0.96705 * 114.00286 * 180.02562 * 5 4 2 31 31 H 1.08996 * 109.50180 * 294.43833 * 8 6 2 32 32 H 1.08995 * 109.50133 * 54.50731 * 8 6 2 33 33 H 1.08995 * 109.46187 * 58.64986 * 9 8 6 34 34 H 1.08999 * 109.46224 * 178.61442 * 9 8 6 35 35 H 1.08999 * 109.39222 * 301.28166 * 10 9 8 36 36 H 1.09004 * 109.62216 * 181.16973 * 10 9 8 37 37 H 1.09000 * 109.58652 * 185.72222 * 11 10 9 38 38 H 1.09004 * 109.58974 * 65.43545 * 11 10 9 39 39 H 1.08997 * 109.47115 * 299.99896 * 15 13 12 40 40 H 1.09010 * 109.46671 * 60.00126 * 15 13 12 41 41 H 0.97001 * 119.99645 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2492 5 8 1.6984 0.0381 -2.4105 6 6 2.0400 -0.7213 1.2493 7 1 1.5644 -0.2993 2.1346 8 6 1.7128 -2.2147 1.1531 9 6 2.3453 -2.9487 2.3378 10 6 3.8664 -2.7837 2.2932 11 6 4.2175 -1.2963 2.3987 12 7 3.4972 -0.5619 1.3497 13 6 4.1603 0.2431 0.4960 14 8 3.5645 0.7922 -0.4065 15 6 5.6422 0.4609 0.6628 16 16 6.2363 1.5819 -0.6279 17 6 7.9449 1.6580 -0.2044 18 1 8.3168 1.0999 0.6421 19 6 8.8130 2.4353 -0.9586 20 7 8.3596 3.1160 -1.9901 21 14 10.6245 2.5155 -0.5101 22 1 10.8775 1.6655 0.6811 23 1 11.4390 2.0240 -1.6503 24 1 10.9972 3.9201 -0.2047 25 1 -0.3634 0.5903 -0.8412 26 1 -0.3633 -1.0236 -0.0906 27 1 -0.3633 0.4333 0.9318 28 1 3.1231 -0.8278 -1.1905 29 1 1.5807 -1.7078 -1.3122 30 1 1.9910 -0.3607 -3.2414 31 1 0.6318 -2.3526 1.1749 32 1 2.1119 -2.6154 0.2213 33 1 1.9639 -2.5308 3.2694 34 1 2.0934 -4.0079 2.2852 35 1 4.2462 -3.1812 1.3520 36 1 4.3178 -3.3240 3.1254 37 1 5.2912 -1.1640 2.2657 38 1 3.9214 -0.9194 3.3777 39 1 5.8372 0.8979 1.6421 40 1 6.1612 -0.4942 0.5812 41 1 8.9662 3.6595 -2.5170 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000598021096.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:17 Heat of formation + Delta-G solvation = -91.389915 kcal Electronic energy + Delta-G solvation = -21936.495422 eV Core-core repulsion = 18749.443406 eV Total energy + Delta-G solvation = -3187.052016 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 287.134 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.94084 -38.41124 -37.83826 -35.20553 -34.59211 -33.81041 -30.82996 -30.28918 -27.70619 -27.10669 -25.88386 -24.67800 -22.04229 -21.41666 -20.14527 -19.28112 -18.34756 -17.65900 -17.04720 -16.90491 -16.88143 -16.00718 -15.91744 -15.39356 -15.11316 -14.81016 -14.55061 -14.37416 -14.33251 -14.07018 -13.57645 -13.41933 -13.32532 -13.15099 -12.93068 -12.77813 -12.59617 -12.43570 -12.04748 -11.83944 -11.69807 -11.57393 -11.39580 -11.32906 -11.16447 -10.58366 -10.23692 -9.91116 -9.41204 -8.65467 -8.35248 -6.12507 1.26800 1.40132 1.46268 1.57091 1.64555 2.14118 2.27658 2.98867 3.25237 3.41491 3.70992 3.80614 3.89838 4.02314 4.15043 4.19715 4.26801 4.30237 4.35560 4.45146 4.46148 4.56662 4.65769 4.70698 4.84991 4.90808 4.97195 5.01968 5.09689 5.13724 5.22346 5.23817 5.37871 5.40932 5.45766 5.49380 5.81559 6.19089 6.39269 6.96300 7.06189 7.28756 8.74099 Molecular weight = 287.13amu Principal moments of inertia in cm(-1) A = 0.021818 B = 0.004722 C = 0.004059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1283.052692 B = 5928.522821 C = 6897.285094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.096 4.096 3 H 0.078 0.922 4 C 0.105 3.895 5 O -0.587 6.587 6 C 0.156 3.844 7 H 0.089 0.911 8 C -0.132 4.132 9 C -0.114 4.114 10 C -0.131 4.131 11 C 0.098 3.902 12 N -0.606 5.606 13 C 0.518 3.482 14 O -0.525 6.525 15 C -0.125 4.125 16 S -0.145 6.145 17 C -0.546 4.546 18 H 0.080 0.920 19 C 0.014 3.986 20 N -0.911 5.911 21 Si 0.997 3.003 22 H -0.257 1.257 23 H -0.273 1.273 24 H -0.274 1.274 25 H 0.043 0.957 26 H 0.068 0.932 27 H 0.065 0.935 28 H 0.028 0.972 29 H 0.043 0.957 30 H 0.383 0.617 31 H 0.093 0.907 32 H 0.057 0.943 33 H 0.077 0.923 34 H 0.080 0.920 35 H 0.053 0.947 36 H 0.098 0.902 37 H 0.082 0.918 38 H 0.088 0.912 39 H 0.099 0.901 40 H 0.099 0.901 41 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.868 -15.179 11.330 22.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.115 4.115 3 H 0.096 0.904 4 C 0.028 3.972 5 O -0.394 6.394 6 C 0.054 3.946 7 H 0.107 0.893 8 C -0.170 4.170 9 C -0.151 4.151 10 C -0.169 4.169 11 C -0.024 4.024 12 N -0.340 5.340 13 C 0.306 3.694 14 O -0.402 6.402 15 C -0.276 4.276 16 S 0.082 5.918 17 C -0.694 4.694 18 H 0.098 0.902 19 C -0.190 4.190 20 N -0.548 5.548 21 Si 0.819 3.181 22 H -0.180 1.180 23 H -0.199 1.199 24 H -0.199 1.199 25 H 0.062 0.938 26 H 0.087 0.913 27 H 0.084 0.916 28 H 0.046 0.954 29 H 0.060 0.940 30 H 0.230 0.770 31 H 0.112 0.888 32 H 0.076 0.924 33 H 0.096 0.904 34 H 0.099 0.901 35 H 0.072 0.928 36 H 0.117 0.883 37 H 0.100 0.900 38 H 0.106 0.894 39 H 0.117 0.883 40 H 0.117 0.883 41 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -13.980 -13.877 10.337 22.246 hybrid contribution 2.177 -0.473 0.296 2.247 sum -11.804 -14.350 10.632 21.408 Atomic orbital electron populations 1.21822 0.93869 1.02240 1.01644 1.21620 0.95837 1.01548 0.92487 0.90427 1.22378 0.97376 0.92041 0.85395 1.86420 1.82242 1.53404 1.17288 1.21421 0.78664 0.96858 0.97692 0.89279 1.22098 1.02288 0.93030 0.99602 1.21517 0.94338 1.01147 0.98143 1.21923 0.97418 0.94516 1.03079 1.22016 0.97222 0.92500 0.90624 1.48106 1.07886 1.45338 1.32715 1.20015 0.88266 0.79418 0.81745 1.90829 1.67328 1.49269 1.32813 1.23426 0.96082 1.03974 1.04160 1.85548 1.07995 1.59558 1.38684 1.23233 0.93698 1.34334 1.18167 0.90215 1.26107 1.04835 0.93899 0.94180 1.70195 1.37599 1.28828 1.18184 0.84926 0.76048 0.78432 0.78677 1.18046 1.19876 1.19922 0.93821 0.91349 0.91608 0.95392 0.93966 0.76983 0.88821 0.92445 0.90412 0.90135 0.92792 0.88324 0.89973 0.89368 0.88310 0.88308 0.92024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.19 8.76 71.98 0.63 -2.56 16 2 C -0.10 -2.82 1.86 -10.79 -0.02 -2.84 16 3 H 0.08 3.03 5.75 -19.95 -0.11 2.92 16 4 C 0.11 3.32 4.36 71.98 0.31 3.63 16 5 O -0.59 -20.48 13.30 -141.12 -1.88 -22.35 16 6 C 0.16 3.55 2.63 44.97 0.12 3.67 16 7 H 0.09 1.76 8.13 -2.39 -0.02 1.74 16 8 C -0.13 -2.19 4.67 30.67 0.14 -2.04 16 9 C -0.11 -1.40 5.88 30.63 0.18 -1.22 16 10 C -0.13 -1.89 6.09 30.68 0.19 -1.71 16 11 C 0.10 1.88 6.33 86.36 0.55 2.43 16 12 N -0.61 -16.14 2.93 -795.01 -2.33 -18.47 16 13 C 0.52 19.32 6.61 87.66 0.58 19.90 16 14 O -0.52 -23.33 9.27 4.81 0.04 -23.28 16 15 C -0.13 -5.10 4.53 71.24 0.32 -4.78 16 16 S -0.15 -8.13 20.57 -56.49 -1.16 -9.30 16 17 C -0.55 -31.53 9.50 67.96 0.65 -30.89 16 18 H 0.08 4.30 7.80 -2.91 -0.02 4.28 16 19 C 0.01 0.83 5.49 84.86 0.47 1.30 16 20 N -0.91 -56.50 13.22 21.65 0.29 -56.21 16 21 Si 1.00 43.91 29.55 68.60 2.03 45.94 16 22 H -0.26 -10.55 7.11 99.48 0.71 -9.85 16 23 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 24 H -0.27 -11.70 7.11 99.48 0.71 -11.00 16 25 H 0.04 1.17 8.00 -2.39 -0.02 1.15 16 26 H 0.07 1.27 7.07 -2.39 -0.02 1.25 16 27 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 28 H 0.03 1.05 5.32 -2.39 -0.01 1.04 16 29 H 0.04 1.10 6.65 -2.38 -0.02 1.08 16 30 H 0.38 10.32 9.12 -74.05 -0.68 9.64 16 31 H 0.09 1.22 7.09 -2.39 -0.02 1.20 16 32 H 0.06 1.13 6.17 -2.39 -0.01 1.11 16 33 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 34 H 0.08 0.78 8.14 -2.39 -0.02 0.77 16 35 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 36 H 0.10 0.99 8.14 -2.38 -0.02 0.97 16 37 H 0.08 1.69 5.95 -2.39 -0.01 1.67 16 38 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 39 H 0.10 3.74 8.07 -2.40 -0.02 3.72 16 40 H 0.10 3.71 7.54 -2.39 -0.02 3.69 16 41 H 0.27 15.53 8.31 -92.71 -0.77 14.76 16 Total: -1.00 -76.66 326.69 1.36 -75.30 By element: Atomic # 1 Polarization: 23.23 SS G_CDS: 0.25 Total: 23.49 kcal Atomic # 6 Polarization: -19.23 SS G_CDS: 4.11 Total: -15.11 kcal Atomic # 7 Polarization: -72.64 SS G_CDS: -2.04 Total: -74.68 kcal Atomic # 8 Polarization: -43.80 SS G_CDS: -1.83 Total: -45.64 kcal Atomic # 14 Polarization: 43.91 SS G_CDS: 2.03 Total: 45.94 kcal Atomic # 16 Polarization: -8.13 SS G_CDS: -1.16 Total: -9.30 kcal Total: -76.66 1.36 -75.30 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598021096.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.088 kcal (2) G-P(sol) polarization free energy of solvation -76.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.301 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds