Wall clock time and date at job start Tue Mar 31 2020 05:54:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08993 * 109.52195 * 2 1 4 4 C 1.53039 * 109.49521 * 239.91913 * 2 1 3 5 5 C 1.53041 * 109.53900 * 301.41570 * 4 2 1 6 6 C 1.53195 * 109.31076 * 298.63422 * 5 4 2 7 7 N 1.46925 * 108.77471 * 54.63520 * 6 5 4 8 8 C 1.34777 * 120.62986 * 126.36988 * 7 6 5 9 9 O 1.21278 * 120.00243 * 185.13037 * 8 7 6 10 10 C 1.50703 * 119.99732 * 5.12821 * 8 7 6 11 11 S 1.81002 * 109.46921 * 179.97438 * 10 8 7 12 12 C 1.76195 * 99.99930 * 180.02562 * 11 10 8 13 13 H 1.07992 * 120.00353 * 0.02562 * 12 11 10 14 14 C 1.38802 * 119.99863 * 180.02562 * 12 11 10 15 15 N 1.31626 * 120.00006 * 0.02562 * 14 12 11 16 16 Si 1.86803 * 120.00130 * 180.02562 * 14 12 11 17 17 H 1.48494 * 109.47040 * 89.99699 * 16 14 12 18 18 H 1.48502 * 109.47092 * 210.00047 * 16 14 12 19 19 H 1.48506 * 109.46991 * 329.99802 * 16 14 12 20 20 C 1.46921 * 118.73680 * 306.39267 * 7 6 5 21 21 H 1.08999 * 109.58543 * 293.81667 * 20 7 6 22 22 C 1.53007 * 109.70272 * 173.46764 * 20 7 6 23 23 C 1.52994 * 109.47332 * 179.33742 * 22 20 7 24 24 O 1.42897 * 109.47132 * 185.21670 * 23 22 20 25 25 H 1.08999 * 109.47338 * 180.08295 * 1 2 3 26 26 H 1.09004 * 109.47121 * 300.08107 * 1 2 3 27 27 H 1.09002 * 109.47366 * 60.08134 * 1 2 3 28 28 H 1.08994 * 109.46502 * 181.39209 * 4 2 1 29 29 H 1.09005 * 109.45965 * 61.43336 * 4 2 1 30 30 H 1.09000 * 109.49628 * 178.68458 * 5 4 2 31 31 H 1.08996 * 109.49964 * 58.58988 * 5 4 2 32 32 H 1.08997 * 109.58369 * 174.42439 * 6 5 4 33 33 H 1.09002 * 109.58185 * 294.84590 * 6 5 4 34 34 H 1.08998 * 109.47377 * 299.99989 * 10 8 7 35 35 H 1.09001 * 109.47175 * 60.00514 * 10 8 7 36 36 H 0.97004 * 119.99914 * 180.02562 * 15 14 12 37 37 H 1.09000 * 109.46774 * 299.33988 * 22 20 7 38 38 H 1.08996 * 109.47206 * 59.33349 * 22 20 7 39 39 H 1.09004 * 109.47196 * 305.21639 * 23 22 20 40 40 H 1.09000 * 109.47098 * 65.21608 * 23 22 20 41 41 H 0.96703 * 113.99820 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0408 -0.7231 -1.2484 5 6 1.5029 -2.1558 -1.2660 6 6 2.0140 -2.9040 -0.0308 7 7 1.6515 -2.1382 1.1695 8 6 0.9740 -2.7218 2.1779 9 8 0.5995 -2.0578 3.1211 10 6 0.6818 -4.1996 2.1332 11 16 -0.2341 -4.6786 3.6192 12 6 -0.4347 -6.4020 3.3126 13 1 -0.0341 -6.8403 2.4106 14 6 -1.1076 -7.1965 4.2305 15 7 -1.5964 -6.6622 5.3297 16 14 -1.3197 -9.0238 3.9059 17 1 -0.1693 -9.7656 4.4815 18 1 -2.5786 -9.4957 4.5366 19 1 -1.3800 -9.2627 2.4414 20 6 2.0413 -0.7239 1.2495 21 1 3.1275 -0.6464 1.2979 22 6 1.4257 -0.0889 2.4980 23 6 1.8483 1.3790 2.5849 24 8 1.3749 1.9391 3.8113 25 1 -0.3634 -1.0276 0.0015 26 1 -0.3633 0.5151 0.8893 27 1 -0.3634 0.5126 -0.8907 28 1 3.1304 -0.7445 -1.2354 29 1 1.6987 -0.1958 -2.1389 30 1 1.8480 -2.6628 -2.1671 31 1 0.4132 -2.1355 -1.2542 32 1 1.5553 -3.8918 0.0137 33 1 3.0979 -3.0043 -0.0869 34 1 0.0850 -4.4254 1.2496 35 1 1.6192 -4.7542 2.0902 36 1 -2.0664 -7.2175 5.9714 37 1 0.3391 -0.1513 2.4392 38 1 1.7726 -0.6199 3.3844 39 1 2.9357 1.4467 2.5503 40 1 1.4231 1.9297 1.7459 41 1 1.6072 2.8698 3.9342 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000598069228.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:50 Heat of formation + Delta-G solvation = -107.465707 kcal Electronic energy + Delta-G solvation = -21651.306816 eV Core-core repulsion = 18463.557701 eV Total energy + Delta-G solvation = -3187.749115 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 287.134 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.80215 -38.81972 -37.80149 -35.04708 -34.59797 -33.89880 -30.99758 -30.07350 -27.78431 -27.59226 -25.72948 -24.54202 -22.15977 -21.49159 -19.87800 -19.19153 -18.38133 -17.63899 -17.15867 -16.89021 -16.77147 -16.41426 -15.92637 -15.40408 -15.29461 -14.78498 -14.73214 -14.47781 -14.31947 -14.08986 -13.62376 -13.49536 -13.18413 -12.91763 -12.89200 -12.71337 -12.57189 -12.50570 -12.24074 -11.88209 -11.80154 -11.71432 -11.37423 -11.31489 -11.14935 -10.79177 -10.25863 -10.03298 -9.49472 -8.67611 -8.35205 -6.13610 1.25652 1.41681 1.45590 1.56061 1.62930 2.10382 2.27170 2.98829 3.18919 3.36119 3.71546 3.83086 3.85831 3.95844 4.09053 4.18559 4.25101 4.28933 4.36282 4.43264 4.47268 4.53288 4.58789 4.63963 4.72999 4.79697 4.88006 4.98911 5.08041 5.16824 5.24661 5.26613 5.33309 5.40249 5.45853 5.53829 5.78697 6.18689 6.36726 6.97377 7.05720 7.24453 8.74133 Molecular weight = 287.13amu Principal moments of inertia in cm(-1) A = 0.021616 B = 0.004364 C = 0.003786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1295.042238 B = 6413.892463 C = 7394.279711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.099 4.099 3 H 0.103 0.897 4 C -0.108 4.108 5 C -0.135 4.135 6 C 0.098 3.902 7 N -0.602 5.602 8 C 0.528 3.472 9 O -0.548 6.548 10 C -0.124 4.124 11 S -0.152 6.152 12 C -0.546 4.546 13 H 0.081 0.919 14 C 0.014 3.986 15 N -0.912 5.912 16 Si 0.999 3.001 17 H -0.267 1.267 18 H -0.277 1.277 19 H -0.257 1.257 20 C 0.156 3.844 21 H 0.090 0.910 22 C -0.109 4.109 23 C 0.073 3.927 24 O -0.600 6.600 25 H 0.037 0.963 26 H 0.039 0.961 27 H 0.071 0.929 28 H 0.081 0.919 29 H 0.082 0.918 30 H 0.099 0.901 31 H 0.056 0.944 32 H 0.082 0.918 33 H 0.091 0.909 34 H 0.101 0.899 35 H 0.102 0.898 36 H 0.271 0.729 37 H 0.054 0.946 38 H 0.051 0.949 39 H 0.062 0.938 40 H 0.065 0.935 41 H 0.395 0.605 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.183 14.282 -17.705 25.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.118 4.118 3 H 0.121 0.879 4 C -0.146 4.146 5 C -0.173 4.173 6 C -0.023 4.023 7 N -0.336 5.336 8 C 0.315 3.685 9 O -0.426 6.426 10 C -0.275 4.275 11 S 0.075 5.925 12 C -0.694 4.694 13 H 0.100 0.900 14 C -0.191 4.191 15 N -0.549 5.549 16 Si 0.821 3.179 17 H -0.192 1.192 18 H -0.203 1.203 19 H -0.181 1.181 20 C 0.054 3.946 21 H 0.108 0.892 22 C -0.146 4.146 23 C -0.004 4.004 24 O -0.409 6.409 25 H 0.056 0.944 26 H 0.059 0.941 27 H 0.090 0.910 28 H 0.100 0.900 29 H 0.101 0.899 30 H 0.117 0.883 31 H 0.075 0.925 32 H 0.100 0.900 33 H 0.109 0.891 34 H 0.119 0.881 35 H 0.120 0.880 36 H 0.080 0.920 37 H 0.072 0.928 38 H 0.070 0.930 39 H 0.080 0.920 40 H 0.083 0.917 41 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges 10.320 14.641 -16.107 24.089 hybrid contribution 0.070 -1.367 -0.585 1.489 sum 10.390 13.274 -16.692 23.723 Atomic orbital electron populations 1.21878 0.96002 1.01069 1.01459 1.21604 0.95682 1.00398 0.94100 0.87863 1.21549 1.01376 0.94691 0.96956 1.21974 1.01105 0.96838 0.97393 1.22053 1.01676 0.95275 0.83330 1.48062 1.55996 1.11418 1.18155 1.20097 0.77482 0.88599 0.82301 1.90785 1.51954 1.63993 1.35907 1.23418 1.04480 0.96084 1.03555 1.85595 1.71664 1.09563 1.25646 1.23190 1.42633 0.93479 1.10103 0.90048 1.26137 0.93978 1.05025 0.93937 1.70193 1.35813 1.38351 1.10513 0.84949 0.78006 0.75869 0.79124 1.19233 1.20260 1.18111 1.21313 0.98972 0.79335 0.95006 0.89186 1.21890 1.01229 0.94059 0.97470 1.22402 0.98201 0.93792 0.86030 1.86529 1.81276 1.31787 1.41263 0.94412 0.94145 0.91012 0.90019 0.89926 0.88281 0.92486 0.89958 0.89066 0.88051 0.87951 0.92000 0.92770 0.93030 0.91985 0.91673 0.75516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.12 8.20 71.98 0.59 -2.53 16 2 C -0.10 -1.63 2.33 -10.72 -0.02 -1.65 16 3 H 0.10 1.24 6.90 -2.39 -0.02 1.23 16 4 C -0.11 -1.28 5.43 30.62 0.17 -1.12 16 5 C -0.14 -1.97 5.74 30.67 0.18 -1.79 16 6 C 0.10 1.90 6.33 86.36 0.55 2.45 16 7 N -0.60 -16.52 2.41 -795.04 -1.91 -18.44 16 8 C 0.53 20.59 7.63 87.66 0.67 21.26 16 9 O -0.55 -26.10 11.28 -3.02 -0.03 -26.14 16 10 C -0.12 -5.18 4.56 71.24 0.32 -4.86 16 11 S -0.15 -8.71 20.57 -56.49 -1.16 -9.88 16 12 C -0.55 -31.87 9.50 67.95 0.65 -31.22 16 13 H 0.08 4.41 7.80 -2.91 -0.02 4.38 16 14 C 0.01 0.80 5.49 84.86 0.47 1.27 16 15 N -0.91 -57.16 13.22 21.65 0.29 -56.87 16 16 Si 1.00 44.20 29.55 68.60 2.03 46.22 16 17 H -0.27 -11.32 7.11 99.48 0.71 -10.62 16 18 H -0.28 -11.95 7.11 99.48 0.71 -11.24 16 19 H -0.26 -10.64 7.11 99.48 0.71 -9.93 16 20 C 0.16 3.60 2.70 44.97 0.12 3.73 16 21 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 22 C -0.11 -3.33 3.05 30.59 0.09 -3.24 16 23 C 0.07 1.63 6.58 71.98 0.47 2.10 16 24 O -0.60 -15.79 13.66 -148.98 -2.03 -17.82 16 25 H 0.04 0.98 5.97 -2.39 -0.01 0.96 16 26 H 0.04 1.02 6.34 -2.39 -0.02 1.00 16 27 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 28 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 29 H 0.08 0.76 8.14 -2.38 -0.02 0.74 16 30 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 31 H 0.06 1.04 6.34 -2.39 -0.02 1.02 16 32 H 0.08 1.71 5.96 -2.39 -0.01 1.70 16 33 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 34 H 0.10 3.89 7.48 -2.40 -0.02 3.87 16 35 H 0.10 3.92 8.11 -2.40 -0.02 3.90 16 36 H 0.27 15.74 8.31 -92.70 -0.77 14.97 16 37 H 0.05 2.03 5.24 -2.39 -0.01 2.02 16 38 H 0.05 2.05 6.40 -2.39 -0.02 2.03 16 39 H 0.06 1.07 8.14 -2.38 -0.02 1.05 16 40 H 0.07 1.11 6.88 -2.39 -0.02 1.10 16 41 H 0.40 5.66 9.12 -74.06 -0.68 4.98 16 Total: -1.00 -81.23 327.39 1.77 -79.45 By element: Atomic # 1 Polarization: 18.71 SS G_CDS: 0.36 Total: 19.07 kcal Atomic # 6 Polarization: -19.85 SS G_CDS: 4.25 Total: -15.61 kcal Atomic # 7 Polarization: -73.68 SS G_CDS: -1.63 Total: -75.31 kcal Atomic # 8 Polarization: -41.89 SS G_CDS: -2.07 Total: -43.96 kcal Atomic # 14 Polarization: 44.20 SS G_CDS: 2.03 Total: 46.22 kcal Atomic # 16 Polarization: -8.71 SS G_CDS: -1.16 Total: -9.88 kcal Total: -81.23 1.77 -79.45 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598069228.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.011 kcal (2) G-P(sol) polarization free energy of solvation -81.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.455 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds