Wall clock time and date at job start Tue Mar 31 2020 05:54:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09008 * 109.49418 * 2 1 4 4 C 1.53041 * 109.50059 * 239.94135 * 2 1 3 5 5 C 1.53042 * 109.54049 * 178.68208 * 4 2 1 6 6 C 1.53188 * 109.31178 * 61.36193 * 5 4 2 7 7 N 1.46931 * 108.77481 * 305.36345 * 6 5 4 8 8 C 1.34779 * 120.62893 * 233.58259 * 7 6 5 9 9 O 1.21283 * 119.99688 * 176.01620 * 8 7 6 10 10 C 1.50701 * 119.99967 * 356.02496 * 8 7 6 11 11 S 1.81002 * 109.46823 * 179.97438 * 10 8 7 12 12 C 1.76202 * 99.99893 * 179.97438 * 11 10 8 13 13 H 1.07993 * 120.00265 * 0.02562 * 12 11 10 14 14 C 1.38798 * 119.99600 * 179.97438 * 12 11 10 15 15 N 1.31625 * 120.00398 * 0.02562 * 14 12 11 16 16 Si 1.86807 * 119.99716 * 180.02562 * 14 12 11 17 17 H 1.48502 * 109.46763 * 60.00218 * 16 14 12 18 18 H 1.48500 * 109.46890 * 180.02562 * 16 14 12 19 19 H 1.48496 * 109.47223 * 300.00451 * 16 14 12 20 20 C 1.46923 * 118.73781 * 53.86728 * 7 6 5 21 21 H 1.08997 * 109.59309 * 65.92500 * 20 7 6 22 22 C 1.52999 * 109.58652 * 186.34912 * 20 7 6 23 23 C 1.53002 * 109.46902 * 67.91143 * 22 20 7 24 24 O 1.42904 * 109.47312 * 186.18932 * 23 22 20 25 25 H 1.08996 * 109.46712 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47171 * 300.05984 * 1 2 3 27 27 H 1.09003 * 109.46899 * 60.06328 * 1 2 3 28 28 H 1.08999 * 109.46228 * 58.65978 * 4 2 1 29 29 H 1.09005 * 109.44306 * 298.69291 * 4 2 1 30 30 H 1.08992 * 109.49453 * 301.40766 * 5 4 2 31 31 H 1.08994 * 109.52079 * 181.32703 * 5 4 2 32 32 H 1.09001 * 109.58605 * 185.57614 * 6 5 4 33 33 H 1.08998 * 109.58992 * 65.15476 * 6 5 4 34 34 H 1.08992 * 109.47464 * 59.99659 * 10 8 7 35 35 H 1.08996 * 109.46982 * 299.98919 * 10 8 7 36 36 H 0.97001 * 120.00168 * 359.97438 * 15 14 12 37 37 H 1.09003 * 109.47448 * 187.91142 * 22 20 7 38 38 H 1.08992 * 109.47210 * 307.91455 * 22 20 7 39 39 H 1.08993 * 109.47542 * 306.19324 * 23 22 20 40 40 H 1.09007 * 109.47000 * 66.19414 * 23 22 20 41 41 H 0.96696 * 114.00312 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0276 0.0000 4 6 2.0409 -0.7226 -1.2486 5 6 3.5709 -0.6945 -1.2663 6 6 4.1054 -1.4265 -0.0313 7 7 3.5047 -0.8293 1.1693 8 6 4.2812 -0.3870 2.1782 9 8 3.7783 0.1693 3.1314 10 6 5.7743 -0.5834 2.1216 11 16 6.5312 0.1138 3.6107 12 6 8.2261 -0.2452 3.2891 13 1 8.5070 -0.7542 2.3790 14 6 9.2002 0.1273 4.2050 15 7 8.8579 0.7481 5.3140 16 14 10.9971 -0.2527 3.8637 17 1 11.4139 0.4158 2.6049 18 1 11.8302 0.2443 4.9880 19 1 11.1754 -1.7205 3.7271 20 6 2.0412 -0.7293 1.2518 21 1 1.6085 -1.7286 1.2980 22 6 1.6507 0.0601 2.5029 23 6 2.0828 1.5189 2.3410 24 8 1.8496 2.2232 3.5624 25 1 -0.3632 -1.0276 0.0005 26 1 -0.3633 0.5148 0.8894 27 1 -0.3633 0.5129 -0.8906 28 1 1.6582 -0.2237 -2.1390 29 1 1.6968 -1.7568 -1.2356 30 1 3.9159 0.3393 -1.2541 31 1 3.9339 -1.1885 -2.1674 32 1 5.1897 -1.3244 0.0132 33 1 3.8377 -2.4816 -0.0876 34 1 6.1740 -0.0799 1.2415 35 1 5.9987 -1.6484 2.0643 36 1 7.9249 0.9457 5.4911 37 1 0.5702 0.0141 2.6391 38 1 2.1453 -0.3708 3.3734 39 1 3.1440 1.5585 2.0957 40 1 1.5070 1.9815 1.5393 41 1 2.1013 3.1563 3.5326 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000598069230.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:53 Heat of formation + Delta-G solvation = -73.146035 kcal Electronic energy + Delta-G solvation = -21920.350700 eV Core-core repulsion = 18734.089798 eV Total energy + Delta-G solvation = -3186.260902 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 287.134 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.84105 -37.59291 -36.45261 -34.20331 -32.89156 -32.51941 -30.21321 -28.56056 -26.61237 -25.12954 -24.69156 -23.14360 -21.43206 -20.38641 -18.86428 -18.07602 -17.20585 -16.70451 -16.09747 -15.75175 -14.88527 -14.70663 -14.49482 -14.18358 -13.84430 -13.66878 -13.60834 -13.16842 -12.99145 -12.68997 -12.40385 -12.26797 -12.11973 -12.03250 -11.71196 -11.51983 -11.40303 -11.16144 -10.92702 -10.90100 -10.51781 -10.41317 -10.17826 -9.54974 -9.41449 -9.00966 -8.67621 -8.34772 -8.20472 -6.66092 -6.61804 -3.99446 2.82359 2.94120 3.32353 3.37353 3.45118 3.57582 4.24190 4.36076 4.52438 4.54248 4.68623 4.80649 4.89487 5.07120 5.14233 5.22706 5.29227 5.32179 5.39129 5.42241 5.48550 5.53151 5.61607 5.64707 5.69066 5.74326 5.80733 5.81800 5.90147 5.93916 6.00152 6.02090 6.20001 6.32937 6.46229 6.82583 7.52776 7.91495 8.00270 8.50301 8.53120 9.27371 10.82100 Molecular weight = 287.13amu Principal moments of inertia in cm(-1) A = 0.023975 B = 0.004555 C = 0.003970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1167.585735 B = 6145.422005 C = 7051.046307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.110 4.110 3 H 0.078 0.922 4 C -0.113 4.113 5 C -0.136 4.136 6 C 0.108 3.892 7 N -0.616 5.616 8 C 0.520 3.480 9 O -0.489 6.489 10 C -0.130 4.130 11 S -0.114 6.114 12 C -0.608 4.608 13 H 0.064 0.936 14 C 0.036 3.964 15 N -0.884 5.884 16 Si 1.083 2.917 17 H -0.285 1.285 18 H -0.278 1.278 19 H -0.285 1.285 20 C 0.159 3.841 21 H 0.073 0.927 22 C -0.122 4.122 23 C 0.095 3.905 24 O -0.567 6.567 25 H 0.055 0.945 26 H 0.060 0.940 27 H 0.056 0.944 28 H 0.064 0.936 29 H 0.063 0.937 30 H 0.067 0.933 31 H 0.075 0.925 32 H 0.089 0.911 33 H 0.067 0.933 34 H 0.088 0.912 35 H 0.089 0.911 36 H 0.278 0.722 37 H 0.055 0.945 38 H 0.114 0.886 39 H 0.058 0.942 40 H 0.018 0.982 41 H 0.371 0.629 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.762 -3.025 -15.092 21.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.130 4.130 3 H 0.096 0.904 4 C -0.151 4.151 5 C -0.174 4.174 6 C -0.016 4.016 7 N -0.352 5.352 8 C 0.309 3.691 9 O -0.364 6.364 10 C -0.281 4.281 11 S 0.112 5.888 12 C -0.756 4.756 13 H 0.082 0.918 14 C -0.175 4.175 15 N -0.518 5.518 16 Si 0.909 3.091 17 H -0.212 1.212 18 H -0.203 1.203 19 H -0.212 1.212 20 C 0.056 3.944 21 H 0.091 0.909 22 C -0.159 4.159 23 C 0.018 3.982 24 O -0.371 6.371 25 H 0.074 0.926 26 H 0.079 0.921 27 H 0.075 0.925 28 H 0.083 0.917 29 H 0.082 0.918 30 H 0.086 0.914 31 H 0.093 0.907 32 H 0.107 0.893 33 H 0.085 0.915 34 H 0.106 0.894 35 H 0.107 0.893 36 H 0.090 0.910 37 H 0.073 0.927 38 H 0.132 0.868 39 H 0.076 0.924 40 H 0.036 0.964 41 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges -14.199 -2.637 -12.844 19.327 hybrid contribution -0.588 -0.425 -2.325 2.435 sum -14.787 -3.062 -15.169 21.404 Atomic orbital electron populations 1.21812 0.94481 1.01982 1.02076 1.21767 0.96006 1.00493 0.94690 0.90360 1.21583 0.95253 1.00743 0.97518 1.21927 0.96096 1.01636 0.97756 1.21725 0.98986 0.96826 0.84039 1.48086 1.05900 1.62702 1.18530 1.20267 0.88506 0.78107 0.82265 1.90803 1.73057 1.39359 1.33200 1.23398 0.94058 1.04974 1.05638 1.84822 1.04770 1.76804 1.22365 1.23698 0.91523 1.48635 1.11766 0.91751 1.26029 1.05549 0.93502 0.92380 1.70796 1.21257 1.35725 1.24012 0.83346 0.73342 0.76340 0.76069 1.21170 1.20273 1.21156 1.21312 0.79571 0.98668 0.94849 0.90898 1.22061 0.99814 0.95031 0.98995 1.22400 0.99315 0.91728 0.84765 1.86452 1.87924 1.26075 1.36667 0.92552 0.92054 0.92540 0.91749 0.91805 0.91395 0.90680 0.89299 0.91494 0.89385 0.89259 0.90968 0.92663 0.86826 0.92363 0.96387 0.78370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.21 8.97 37.16 0.33 -0.88 16 2 C -0.11 -1.08 1.93 -90.27 -0.17 -1.25 16 3 H 0.08 0.87 6.17 -51.92 -0.32 0.55 16 4 C -0.11 -0.93 5.16 -26.69 -0.14 -1.07 16 5 C -0.14 -1.19 6.08 -26.61 -0.16 -1.36 16 6 C 0.11 1.15 6.33 -3.71 -0.02 1.13 16 7 N -0.62 -8.47 2.92 -164.97 -0.48 -8.95 16 8 C 0.52 9.47 6.63 -10.98 -0.07 9.40 16 9 O -0.49 -10.29 9.26 -1.70 -0.02 -10.30 16 10 C -0.13 -2.61 4.54 36.01 0.16 -2.44 16 11 S -0.11 -3.05 19.60 -107.50 -2.11 -5.15 16 12 C -0.61 -17.49 9.50 30.94 0.29 -17.19 16 13 H 0.06 1.77 7.80 -52.49 -0.41 1.36 16 14 C 0.04 1.05 5.49 -17.43 -0.10 0.95 16 15 N -0.88 -27.53 13.67 55.49 0.76 -26.77 16 16 Si 1.08 24.91 29.92 -169.99 -5.09 19.82 16 17 H -0.29 -6.20 7.11 56.52 0.40 -5.80 16 18 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 19 H -0.29 -6.21 7.11 56.52 0.40 -5.81 16 20 C 0.16 1.94 2.69 -67.38 -0.18 1.76 16 21 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 22 C -0.12 -1.80 4.42 -26.73 -0.12 -1.92 16 23 C 0.10 1.48 5.01 37.16 0.19 1.66 16 24 O -0.57 -9.57 13.62 -42.49 -0.58 -10.15 16 25 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.06 0.55 6.83 -51.93 -0.35 0.20 16 27 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 30 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.09 0.99 5.96 -51.93 -0.31 0.68 16 33 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.09 1.66 7.52 -51.92 -0.39 1.27 16 35 H 0.09 1.71 8.08 -51.92 -0.42 1.29 16 36 H 0.28 8.85 7.13 -40.82 -0.29 8.56 16 37 H 0.05 0.74 7.07 -51.93 -0.37 0.37 16 38 H 0.11 2.10 5.75 -53.02 -0.30 1.79 16 39 H 0.06 1.05 5.31 -51.93 -0.28 0.77 16 40 H 0.02 0.24 6.61 -51.93 -0.34 -0.10 16 41 H 0.37 4.72 9.12 45.56 0.42 5.14 16 LS Contribution 325.53 15.07 4.91 4.91 Total: -1.00 -34.31 325.53 -8.14 -42.45 By element: Atomic # 1 Polarization: 10.91 SS G_CDS: -5.55 Total: 5.36 kcal Atomic # 6 Polarization: -11.23 SS G_CDS: 0.01 Total: -11.21 kcal Atomic # 7 Polarization: -36.00 SS G_CDS: 0.28 Total: -35.73 kcal Atomic # 8 Polarization: -19.85 SS G_CDS: -0.59 Total: -20.45 kcal Atomic # 14 Polarization: 24.91 SS G_CDS: -5.09 Total: 19.82 kcal Atomic # 16 Polarization: -3.05 SS G_CDS: -2.11 Total: -5.15 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -34.31 -8.14 -42.45 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598069230.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.692 kcal (2) G-P(sol) polarization free energy of solvation -34.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.454 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds