Wall clock time and date at job start Tue Mar 31 2020 05:54:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09008 * 109.49418 * 2 1 4 4 C 1.53041 * 109.50059 * 239.94135 * 2 1 3 5 5 C 1.53042 * 109.54049 * 178.68208 * 4 2 1 6 6 C 1.53188 * 109.31178 * 61.36193 * 5 4 2 7 7 N 1.46931 * 108.77481 * 305.36345 * 6 5 4 8 8 C 1.34779 * 120.62893 * 233.58259 * 7 6 5 9 9 O 1.21283 * 119.99688 * 176.01620 * 8 7 6 10 10 C 1.50701 * 119.99967 * 356.02496 * 8 7 6 11 11 S 1.81002 * 109.46823 * 179.97438 * 10 8 7 12 12 C 1.76202 * 99.99893 * 179.97438 * 11 10 8 13 13 H 1.07993 * 120.00265 * 0.02562 * 12 11 10 14 14 C 1.38798 * 119.99600 * 179.97438 * 12 11 10 15 15 N 1.31625 * 120.00398 * 0.02562 * 14 12 11 16 16 Si 1.86807 * 119.99716 * 180.02562 * 14 12 11 17 17 H 1.48502 * 109.46763 * 60.00218 * 16 14 12 18 18 H 1.48500 * 109.46890 * 180.02562 * 16 14 12 19 19 H 1.48496 * 109.47223 * 300.00451 * 16 14 12 20 20 C 1.46923 * 118.73781 * 53.86728 * 7 6 5 21 21 H 1.08997 * 109.59309 * 65.92500 * 20 7 6 22 22 C 1.52999 * 109.58652 * 186.34912 * 20 7 6 23 23 C 1.53002 * 109.46902 * 67.91143 * 22 20 7 24 24 O 1.42904 * 109.47312 * 186.18932 * 23 22 20 25 25 H 1.08996 * 109.46712 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47171 * 300.05984 * 1 2 3 27 27 H 1.09003 * 109.46899 * 60.06328 * 1 2 3 28 28 H 1.08999 * 109.46228 * 58.65978 * 4 2 1 29 29 H 1.09005 * 109.44306 * 298.69291 * 4 2 1 30 30 H 1.08992 * 109.49453 * 301.40766 * 5 4 2 31 31 H 1.08994 * 109.52079 * 181.32703 * 5 4 2 32 32 H 1.09001 * 109.58605 * 185.57614 * 6 5 4 33 33 H 1.08998 * 109.58992 * 65.15476 * 6 5 4 34 34 H 1.08992 * 109.47464 * 59.99659 * 10 8 7 35 35 H 1.08996 * 109.46982 * 299.98919 * 10 8 7 36 36 H 0.97001 * 120.00168 * 359.97438 * 15 14 12 37 37 H 1.09003 * 109.47448 * 187.91142 * 22 20 7 38 38 H 1.08992 * 109.47210 * 307.91455 * 22 20 7 39 39 H 1.08993 * 109.47542 * 306.19324 * 23 22 20 40 40 H 1.09007 * 109.47000 * 66.19414 * 23 22 20 41 41 H 0.96696 * 114.00312 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0276 0.0000 4 6 2.0409 -0.7226 -1.2486 5 6 3.5709 -0.6945 -1.2663 6 6 4.1054 -1.4265 -0.0313 7 7 3.5047 -0.8293 1.1693 8 6 4.2812 -0.3870 2.1782 9 8 3.7783 0.1693 3.1314 10 6 5.7743 -0.5834 2.1216 11 16 6.5312 0.1138 3.6107 12 6 8.2261 -0.2452 3.2891 13 1 8.5070 -0.7542 2.3790 14 6 9.2002 0.1273 4.2050 15 7 8.8579 0.7481 5.3140 16 14 10.9971 -0.2527 3.8637 17 1 11.4139 0.4158 2.6049 18 1 11.8302 0.2443 4.9880 19 1 11.1754 -1.7205 3.7271 20 6 2.0412 -0.7293 1.2518 21 1 1.6085 -1.7286 1.2980 22 6 1.6507 0.0601 2.5029 23 6 2.0828 1.5189 2.3410 24 8 1.8496 2.2232 3.5624 25 1 -0.3632 -1.0276 0.0005 26 1 -0.3633 0.5148 0.8894 27 1 -0.3633 0.5129 -0.8906 28 1 1.6582 -0.2237 -2.1390 29 1 1.6968 -1.7568 -1.2356 30 1 3.9159 0.3393 -1.2541 31 1 3.9339 -1.1885 -2.1674 32 1 5.1897 -1.3244 0.0132 33 1 3.8377 -2.4816 -0.0876 34 1 6.1740 -0.0799 1.2415 35 1 5.9987 -1.6484 2.0643 36 1 7.9249 0.9457 5.4911 37 1 0.5702 0.0141 2.6391 38 1 2.1453 -0.3708 3.3734 39 1 3.1440 1.5585 2.0957 40 1 1.5070 1.9815 1.5393 41 1 2.1013 3.1563 3.5326 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000598069230.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:53 Heat of formation + Delta-G solvation = -97.562534 kcal Electronic energy + Delta-G solvation = -21921.409479 eV Core-core repulsion = 18734.089798 eV Total energy + Delta-G solvation = -3187.319681 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 287.134 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.01759 -38.72412 -37.70599 -35.26379 -34.75372 -33.86973 -31.42528 -29.87548 -27.44395 -27.07368 -26.06842 -24.13393 -22.30875 -21.53731 -20.48911 -19.64884 -18.49340 -17.94961 -17.38812 -17.00647 -16.35688 -15.91542 -15.71322 -15.59708 -15.30991 -14.84593 -14.70856 -14.51243 -14.22913 -14.11726 -13.82018 -13.59640 -13.47519 -13.03835 -12.80260 -12.71775 -12.64115 -12.33142 -11.96546 -11.96189 -11.70917 -11.52304 -11.43585 -11.28401 -11.10091 -10.64632 -10.30107 -10.06495 -9.48524 -8.92625 -8.85749 -6.27187 1.20052 1.51092 1.53270 1.59773 1.79954 2.04066 2.34122 3.02209 3.09756 3.31608 3.61425 3.70197 3.79620 3.92366 4.03945 4.10879 4.17310 4.24462 4.30765 4.35490 4.45110 4.55556 4.56783 4.64484 4.78806 4.81201 4.90499 4.94265 5.08925 5.10681 5.18043 5.18892 5.28852 5.39926 5.50140 5.63043 5.69148 6.14361 6.30385 6.88114 7.06200 7.18109 8.50707 Molecular weight = 287.13amu Principal moments of inertia in cm(-1) A = 0.023975 B = 0.004555 C = 0.003970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1167.585735 B = 6145.422005 C = 7051.046307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.104 4.104 3 H 0.063 0.937 4 C -0.109 4.109 5 C -0.131 4.131 6 C 0.098 3.902 7 N -0.604 5.604 8 C 0.517 3.483 9 O -0.525 6.525 10 C -0.105 4.105 11 S -0.190 6.190 12 C -0.615 4.615 13 H 0.072 0.928 14 C -0.018 4.018 15 N -0.913 5.913 16 Si 1.135 2.865 17 H -0.263 1.263 18 H -0.280 1.280 19 H -0.264 1.264 20 C 0.159 3.841 21 H 0.091 0.909 22 C -0.118 4.118 23 C 0.099 3.901 24 O -0.591 6.591 25 H 0.068 0.932 26 H 0.050 0.950 27 H 0.070 0.930 28 H 0.081 0.919 29 H 0.078 0.922 30 H 0.053 0.947 31 H 0.100 0.900 32 H 0.082 0.918 33 H 0.090 0.910 34 H 0.101 0.899 35 H 0.101 0.899 36 H 0.260 0.740 37 H 0.070 0.930 38 H 0.073 0.927 39 H 0.031 0.969 40 H 0.044 0.956 41 H 0.385 0.615 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.360 -4.445 -18.367 24.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.124 4.124 3 H 0.081 0.919 4 C -0.146 4.146 5 C -0.169 4.169 6 C -0.024 4.024 7 N -0.338 5.338 8 C 0.304 3.696 9 O -0.403 6.403 10 C -0.257 4.257 11 S 0.037 5.963 12 C -0.762 4.762 13 H 0.091 0.909 14 C -0.221 4.221 15 N -0.548 5.548 16 Si 0.953 3.047 17 H -0.188 1.188 18 H -0.205 1.205 19 H -0.188 1.188 20 C 0.056 3.944 21 H 0.109 0.891 22 C -0.156 4.156 23 C 0.022 3.978 24 O -0.398 6.398 25 H 0.087 0.913 26 H 0.069 0.931 27 H 0.089 0.911 28 H 0.099 0.901 29 H 0.097 0.903 30 H 0.072 0.928 31 H 0.119 0.881 32 H 0.100 0.900 33 H 0.108 0.892 34 H 0.119 0.881 35 H 0.119 0.881 36 H 0.071 0.929 37 H 0.088 0.912 38 H 0.091 0.909 39 H 0.049 0.951 40 H 0.062 0.938 41 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges -14.838 -4.071 -16.177 22.326 hybrid contribution -0.531 0.000 -1.377 1.476 sum -15.369 -4.072 -17.554 23.684 Atomic orbital electron populations 1.21793 0.92977 1.02911 1.02314 1.21715 0.97129 0.99436 0.94091 0.91886 1.21586 0.94521 1.01547 0.96988 1.21915 0.96687 1.00790 0.97505 1.22052 0.98698 0.98244 0.83416 1.48088 1.06456 1.61193 1.18098 1.19979 0.87858 0.78663 0.83062 1.90832 1.73260 1.41232 1.34945 1.23280 0.95432 1.04989 1.01951 1.85034 1.05493 1.78205 1.27583 1.24034 0.92207 1.48061 1.11939 0.90938 1.27809 1.10341 0.92388 0.91553 1.70918 1.20125 1.38073 1.25717 0.82737 0.67706 0.77577 0.76688 1.18751 1.20523 1.18832 1.21498 0.78354 0.99533 0.94990 0.89094 1.21949 1.00157 0.94650 0.98805 1.22377 0.98019 0.92464 0.84895 1.86412 1.88004 1.27487 1.37867 0.91286 0.93117 0.91055 0.90056 0.90306 0.92768 0.88117 0.89954 0.89168 0.88061 0.88068 0.92913 0.91208 0.90895 0.95142 0.93808 0.76768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.88 8.97 71.98 0.65 -1.24 16 2 C -0.10 -1.75 1.93 -10.57 -0.02 -1.77 16 3 H 0.06 1.27 6.17 -2.38 -0.01 1.25 16 4 C -0.11 -1.33 5.16 30.62 0.16 -1.17 16 5 C -0.13 -1.84 6.08 30.67 0.19 -1.65 16 6 C 0.10 1.82 6.33 86.36 0.55 2.37 16 7 N -0.60 -15.83 2.92 -794.22 -2.32 -18.15 16 8 C 0.52 19.05 6.63 87.66 0.58 19.63 16 9 O -0.52 -23.07 9.26 3.90 0.04 -23.03 16 10 C -0.11 -4.25 4.54 71.24 0.32 -3.93 16 11 S -0.19 -10.54 19.60 -56.49 -1.11 -11.64 16 12 C -0.61 -35.75 9.50 67.95 0.65 -35.11 16 13 H 0.07 3.96 7.80 -2.91 -0.02 3.94 16 14 C -0.02 -1.04 5.49 84.86 0.47 -0.57 16 15 N -0.91 -58.53 13.67 21.65 0.30 -58.24 16 16 Si 1.14 49.51 29.92 68.60 2.05 51.56 16 17 H -0.26 -10.42 7.11 99.48 0.71 -9.72 16 18 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 19 H -0.26 -10.49 7.11 99.48 0.71 -9.79 16 20 C 0.16 3.59 2.69 45.12 0.12 3.71 16 21 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 22 C -0.12 -3.50 4.42 30.59 0.14 -3.36 16 23 C 0.10 3.13 5.01 71.98 0.36 3.49 16 24 O -0.59 -20.61 13.62 -142.04 -1.93 -22.55 16 25 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 26 H 0.05 0.79 6.83 -2.39 -0.02 0.77 16 27 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 28 H 0.08 0.79 8.14 -2.39 -0.02 0.78 16 29 H 0.08 0.79 8.14 -2.38 -0.02 0.77 16 30 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 31 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 32 H 0.08 1.65 5.96 -2.39 -0.01 1.64 16 33 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 34 H 0.10 3.79 7.52 -2.40 -0.02 3.77 16 35 H 0.10 3.82 8.08 -2.40 -0.02 3.80 16 36 H 0.26 17.37 7.13 -92.71 -0.66 16.71 16 37 H 0.07 1.81 7.07 -2.39 -0.02 1.80 16 38 H 0.07 2.81 5.75 -19.56 -0.11 2.69 16 39 H 0.03 1.14 5.31 -2.39 -0.01 1.12 16 40 H 0.04 1.14 6.61 -2.38 -0.02 1.12 16 41 H 0.38 10.24 9.12 -74.06 -0.68 9.56 16 Total: -1.00 -78.07 325.53 1.54 -76.53 By element: Atomic # 1 Polarization: 24.74 SS G_CDS: 0.37 Total: 25.11 kcal Atomic # 6 Polarization: -23.74 SS G_CDS: 4.15 Total: -19.59 kcal Atomic # 7 Polarization: -74.36 SS G_CDS: -2.03 Total: -76.39 kcal Atomic # 8 Polarization: -43.68 SS G_CDS: -1.90 Total: -45.58 kcal Atomic # 14 Polarization: 49.51 SS G_CDS: 2.05 Total: 51.56 kcal Atomic # 16 Polarization: -10.54 SS G_CDS: -1.11 Total: -11.64 kcal Total: -78.07 1.54 -76.53 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598069230.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.028 kcal (2) G-P(sol) polarization free energy of solvation -78.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.535 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds