Wall clock time and date at job start Tue Mar 31 2020 05:54:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09007 * 109.49263 * 2 1 4 4 C 1.53037 * 109.50246 * 120.06765 * 2 1 3 5 5 C 1.53108 * 109.49849 * 58.61865 * 4 2 1 6 6 C 1.53193 * 109.33225 * 61.34323 * 5 4 2 7 7 N 1.46922 * 108.77679 * 305.36532 * 6 5 4 8 8 C 1.34775 * 120.63248 * 233.62777 * 7 6 5 9 9 O 1.21277 * 120.00280 * 185.52186 * 8 7 6 10 10 C 1.50703 * 119.99844 * 5.52556 * 8 7 6 11 11 S 1.80995 * 109.47319 * 179.97438 * 10 8 7 12 12 C 1.76202 * 100.00287 * 179.97438 * 11 10 8 13 13 H 1.08008 * 119.99729 * 359.97438 * 12 11 10 14 14 C 1.38796 * 120.00147 * 180.02562 * 12 11 10 15 15 N 1.31634 * 119.99883 * 359.97438 * 14 12 11 16 16 Si 1.86801 * 119.99983 * 179.97438 * 14 12 11 17 17 H 1.48506 * 109.47152 * 359.97438 * 16 14 12 18 18 H 1.48497 * 109.47084 * 119.99573 * 16 14 12 19 19 H 1.48504 * 109.47143 * 239.99824 * 16 14 12 20 20 C 1.46925 * 118.73779 * 53.60331 * 7 6 5 21 21 H 1.09000 * 109.58796 * 66.18132 * 20 7 6 22 22 C 1.53008 * 109.70219 * 186.53497 * 20 7 6 23 23 C 1.52998 * 109.46780 * 178.15144 * 22 20 7 24 24 O 1.42901 * 109.46866 * 184.85265 * 23 22 20 25 25 H 1.08995 * 109.46940 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.46975 * 59.99328 * 1 2 3 27 27 H 1.09001 * 109.46895 * 299.99401 * 1 2 3 28 28 H 1.08998 * 109.46406 * 178.60413 * 4 2 1 29 29 H 1.09002 * 109.45696 * 298.57136 * 4 2 1 30 30 H 1.09002 * 109.49338 * 301.38338 * 5 4 2 31 31 H 1.09003 * 109.51508 * 181.31521 * 5 4 2 32 32 H 1.09001 * 109.58789 * 185.57209 * 6 5 4 33 33 H 1.08999 * 109.69978 * 65.22206 * 6 5 4 34 34 H 1.09004 * 109.46700 * 299.99841 * 10 8 7 35 35 H 1.09004 * 109.47145 * 59.99508 * 10 8 7 36 36 H 0.97005 * 119.99371 * 180.02562 * 15 14 12 37 37 H 1.08996 * 109.46942 * 298.15436 * 22 20 7 38 38 H 1.08997 * 109.46833 * 58.15115 * 22 20 7 39 39 H 1.08996 * 109.47521 * 304.85310 * 23 22 20 40 40 H 1.08998 * 109.47560 * 64.85921 * 23 22 20 41 41 H 0.96705 * 114.00323 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8938 1.0276 0.0000 4 6 2.0410 -0.7228 1.2484 5 6 1.5031 -2.1562 1.2652 6 6 2.0140 -2.9040 0.0296 7 7 1.6516 -2.1377 -1.1704 8 6 0.9740 -2.7210 -2.1789 9 8 0.7680 -2.1084 -3.2052 10 6 0.4723 -4.1344 -2.0314 11 16 -0.3918 -4.6288 -3.5430 12 6 -0.8570 -6.2712 -3.1063 13 1 -0.5893 -6.6690 -2.1385 14 6 -1.5665 -7.0541 -4.0063 15 7 -1.8923 -6.5693 -5.1860 16 14 -2.0591 -8.7955 -3.5436 17 1 -1.5757 -9.0989 -2.1726 18 1 -3.5383 -8.9194 -3.5862 19 1 -1.4542 -9.7529 -4.5044 20 6 2.0413 -0.7233 -1.2499 21 1 3.1274 -0.6457 -1.2983 22 6 1.4255 -0.0879 -2.4982 23 6 1.7966 1.3954 -2.5512 24 8 1.1301 2.0140 -3.6536 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 0.5137 0.8901 28 1 3.1307 -0.7441 1.2354 29 1 1.6988 -0.1953 2.1389 30 1 0.4134 -2.1359 1.2533 31 1 1.8478 -2.6639 2.1660 32 1 1.5555 -3.8918 -0.0152 33 1 3.0978 -3.0064 0.0842 34 1 1.3158 -4.8031 -1.8593 35 1 -0.2138 -4.1900 -1.1863 36 1 -2.3885 -7.1164 -5.8149 37 1 1.8071 -0.5900 -3.3872 38 1 0.3410 -0.1901 -2.4605 39 1 1.4912 1.8798 -1.6238 40 1 2.8748 1.4961 -2.6757 41 1 1.3199 2.9575 -3.7488 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000598069231.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:55 Heat of formation + Delta-G solvation = -82.284663 kcal Electronic energy + Delta-G solvation = -21674.428858 eV Core-core repulsion = 18487.771675 eV Total energy + Delta-G solvation = -3186.657183 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 287.134 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.64517 -37.59922 -36.82366 -33.94977 -32.90211 -32.40706 -29.71857 -28.84959 -26.79197 -25.51011 -24.65040 -23.65367 -21.18705 -20.26550 -18.44145 -17.69066 -17.26607 -16.40107 -15.99119 -15.53331 -15.34307 -14.78956 -14.51982 -14.39623 -13.94269 -13.81592 -13.48966 -13.36049 -12.95913 -12.68257 -12.54664 -12.01641 -11.96301 -11.71204 -11.56218 -11.24015 -11.06661 -11.03233 -10.96101 -10.82356 -10.73872 -10.58287 -10.49451 -9.85812 -9.76994 -9.05615 -8.60793 -8.38279 -8.18555 -6.47119 -6.19863 -3.89922 2.93391 3.09833 3.22519 3.26792 3.31929 3.59898 4.21729 4.22331 4.55576 4.65536 4.68023 4.87725 5.04762 5.06942 5.15331 5.15715 5.26970 5.32696 5.35380 5.45139 5.53196 5.58075 5.59923 5.65590 5.73703 5.76533 5.79777 5.89971 5.95121 6.03986 6.05616 6.14823 6.31551 6.44151 6.54782 6.92324 7.60897 7.62662 7.67471 8.37047 8.64706 9.25560 10.87578 Molecular weight = 287.13amu Principal moments of inertia in cm(-1) A = 0.021507 B = 0.004399 C = 0.003825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1301.599389 B = 6364.171878 C = 7317.629524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.107 4.107 3 H 0.078 0.922 4 C -0.113 4.113 5 C -0.139 4.139 6 C 0.109 3.891 7 N -0.614 5.614 8 C 0.533 3.467 9 O -0.505 6.505 10 C -0.152 4.152 11 S -0.060 6.060 12 C -0.535 4.535 13 H 0.072 0.928 14 C 0.074 3.926 15 N -0.867 5.867 16 Si 0.918 3.082 17 H -0.272 1.272 18 H -0.280 1.280 19 H -0.280 1.280 20 C 0.159 3.841 21 H 0.067 0.933 22 C -0.118 4.118 23 C 0.069 3.931 24 O -0.567 6.567 25 H 0.061 0.939 26 H 0.061 0.939 27 H 0.050 0.950 28 H 0.062 0.938 29 H 0.063 0.937 30 H 0.073 0.927 31 H 0.072 0.928 32 H 0.090 0.910 33 H 0.066 0.934 34 H 0.087 0.913 35 H 0.087 0.913 36 H 0.268 0.732 37 H 0.103 0.897 38 H 0.085 0.915 39 H 0.041 0.959 40 H 0.038 0.962 41 H 0.373 0.627 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.680 13.978 14.141 22.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.126 4.126 3 H 0.096 0.904 4 C -0.151 4.151 5 C -0.177 4.177 6 C -0.015 4.015 7 N -0.351 5.351 8 C 0.322 3.678 9 O -0.379 6.379 10 C -0.303 4.303 11 S 0.167 5.833 12 C -0.683 4.683 13 H 0.090 0.910 14 C -0.135 4.135 15 N -0.503 5.503 16 Si 0.744 3.256 17 H -0.196 1.196 18 H -0.206 1.206 19 H -0.206 1.206 20 C 0.056 3.944 21 H 0.085 0.915 22 C -0.155 4.155 23 C -0.009 4.009 24 O -0.372 6.372 25 H 0.080 0.920 26 H 0.080 0.920 27 H 0.070 0.930 28 H 0.081 0.919 29 H 0.082 0.918 30 H 0.091 0.909 31 H 0.091 0.909 32 H 0.108 0.892 33 H 0.084 0.916 34 H 0.105 0.895 35 H 0.105 0.895 36 H 0.077 0.923 37 H 0.121 0.879 38 H 0.104 0.896 39 H 0.059 0.941 40 H 0.056 0.944 41 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges 9.052 14.221 12.359 20.903 hybrid contribution 0.223 -1.303 1.773 2.212 sum 9.276 12.918 14.132 21.275 Atomic orbital electron populations 1.21914 0.94530 1.02669 1.01580 1.21609 0.97083 0.99137 0.94754 0.90383 1.21548 1.00301 0.95712 0.97496 1.21993 1.02041 0.95976 0.97709 1.21708 1.00045 0.95669 0.84043 1.48064 1.57959 1.10311 1.18730 1.20313 0.76779 0.88134 0.82608 1.90742 1.55652 1.63499 1.28018 1.23602 1.03874 0.95239 1.07542 1.85412 1.68706 1.15694 1.13496 1.22904 1.41752 0.99140 1.04486 0.90974 1.24984 0.95132 0.98952 0.94482 1.70035 1.36970 1.36925 1.06330 0.86134 0.78329 0.82579 0.78553 1.19637 1.20574 1.20575 1.21047 0.98023 0.80601 0.94744 0.91543 1.22143 1.03506 0.91490 0.98352 1.22439 0.94956 0.95290 0.88253 1.86578 1.72654 1.26789 1.51144 0.91966 0.92030 0.93044 0.91934 0.91788 0.90861 0.90914 0.89205 0.91600 0.89501 0.89468 0.92259 0.87899 0.89619 0.94079 0.94393 0.78165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.68 8.20 37.16 0.30 -1.38 16 2 C -0.11 -1.05 2.25 -90.50 -0.20 -1.25 16 3 H 0.08 0.66 6.62 -51.93 -0.34 0.31 16 4 C -0.11 -0.93 5.44 -26.66 -0.14 -1.08 16 5 C -0.14 -1.25 5.74 -26.58 -0.15 -1.41 16 6 C 0.11 1.19 6.35 -3.71 -0.02 1.17 16 7 N -0.61 -8.68 2.41 -165.22 -0.40 -9.08 16 8 C 0.53 10.07 7.55 -10.98 -0.08 9.98 16 9 O -0.50 -11.22 11.43 5.56 0.06 -11.15 16 10 C -0.15 -3.10 4.51 36.01 0.16 -2.94 16 11 S -0.06 -1.63 20.57 -107.50 -2.21 -3.85 16 12 C -0.53 -15.29 9.50 30.94 0.29 -15.00 16 13 H 0.07 1.96 7.80 -52.48 -0.41 1.55 16 14 C 0.07 2.11 5.49 -17.43 -0.10 2.02 16 15 N -0.87 -26.35 13.22 55.49 0.73 -25.61 16 16 Si 0.92 21.50 29.55 -169.99 -5.02 16.48 16 17 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 18 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 19 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 20 C 0.16 1.97 2.73 -67.60 -0.18 1.78 16 21 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 22 C -0.12 -1.75 3.02 -26.73 -0.08 -1.83 16 23 C 0.07 0.80 6.77 37.16 0.25 1.05 16 24 O -0.57 -7.43 13.66 -35.23 -0.48 -7.91 16 25 H 0.06 0.81 5.97 -51.93 -0.31 0.50 16 26 H 0.06 0.77 6.36 -51.93 -0.33 0.44 16 27 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.07 0.74 6.33 -51.93 -0.33 0.42 16 31 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.09 1.02 5.93 -51.93 -0.31 0.71 16 33 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 34 H 0.09 1.65 7.72 -51.91 -0.40 1.25 16 35 H 0.09 1.67 7.92 -51.91 -0.41 1.26 16 36 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 37 H 0.10 1.89 6.25 -51.93 -0.32 1.56 16 38 H 0.09 1.52 5.53 -51.93 -0.29 1.23 16 39 H 0.04 0.40 6.28 -51.93 -0.33 0.07 16 40 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 41 H 0.37 2.82 9.12 45.56 0.42 3.24 16 LS Contribution 326.86 15.07 4.93 4.93 Total: -1.00 -34.65 326.86 -7.81 -42.46 By element: Atomic # 1 Polarization: 8.08 SS G_CDS: -5.46 Total: 2.62 kcal Atomic # 6 Polarization: -8.93 SS G_CDS: 0.04 Total: -8.88 kcal Atomic # 7 Polarization: -35.03 SS G_CDS: 0.34 Total: -34.69 kcal Atomic # 8 Polarization: -18.64 SS G_CDS: -0.42 Total: -19.06 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Atomic # 16 Polarization: -1.63 SS G_CDS: -2.21 Total: -3.85 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -34.65 -7.81 -42.46 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598069231.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.828 kcal (2) G-P(sol) polarization free energy of solvation -34.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.456 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds