Wall clock time and date at job start Tue Mar 31 2020 05:54:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09007 * 109.49263 * 2 1 4 4 C 1.53037 * 109.50246 * 120.06765 * 2 1 3 5 5 C 1.53108 * 109.49849 * 58.61865 * 4 2 1 6 6 C 1.53193 * 109.33225 * 61.34323 * 5 4 2 7 7 N 1.46922 * 108.77679 * 305.36532 * 6 5 4 8 8 C 1.34775 * 120.63248 * 233.62777 * 7 6 5 9 9 O 1.21277 * 120.00280 * 185.52186 * 8 7 6 10 10 C 1.50703 * 119.99844 * 5.52556 * 8 7 6 11 11 S 1.80995 * 109.47319 * 179.97438 * 10 8 7 12 12 C 1.76202 * 100.00287 * 179.97438 * 11 10 8 13 13 H 1.08008 * 119.99729 * 359.97438 * 12 11 10 14 14 C 1.38796 * 120.00147 * 180.02562 * 12 11 10 15 15 N 1.31634 * 119.99883 * 359.97438 * 14 12 11 16 16 Si 1.86801 * 119.99983 * 179.97438 * 14 12 11 17 17 H 1.48506 * 109.47152 * 359.97438 * 16 14 12 18 18 H 1.48497 * 109.47084 * 119.99573 * 16 14 12 19 19 H 1.48504 * 109.47143 * 239.99824 * 16 14 12 20 20 C 1.46925 * 118.73779 * 53.60331 * 7 6 5 21 21 H 1.09000 * 109.58796 * 66.18132 * 20 7 6 22 22 C 1.53008 * 109.70219 * 186.53497 * 20 7 6 23 23 C 1.52998 * 109.46780 * 178.15144 * 22 20 7 24 24 O 1.42901 * 109.46866 * 184.85265 * 23 22 20 25 25 H 1.08995 * 109.46940 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.46975 * 59.99328 * 1 2 3 27 27 H 1.09001 * 109.46895 * 299.99401 * 1 2 3 28 28 H 1.08998 * 109.46406 * 178.60413 * 4 2 1 29 29 H 1.09002 * 109.45696 * 298.57136 * 4 2 1 30 30 H 1.09002 * 109.49338 * 301.38338 * 5 4 2 31 31 H 1.09003 * 109.51508 * 181.31521 * 5 4 2 32 32 H 1.09001 * 109.58789 * 185.57209 * 6 5 4 33 33 H 1.08999 * 109.69978 * 65.22206 * 6 5 4 34 34 H 1.09004 * 109.46700 * 299.99841 * 10 8 7 35 35 H 1.09004 * 109.47145 * 59.99508 * 10 8 7 36 36 H 0.97005 * 119.99371 * 180.02562 * 15 14 12 37 37 H 1.08996 * 109.46942 * 298.15436 * 22 20 7 38 38 H 1.08997 * 109.46833 * 58.15115 * 22 20 7 39 39 H 1.08996 * 109.47521 * 304.85310 * 23 22 20 40 40 H 1.08998 * 109.47560 * 64.85921 * 23 22 20 41 41 H 0.96705 * 114.00323 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8938 1.0276 0.0000 4 6 2.0410 -0.7228 1.2484 5 6 1.5031 -2.1562 1.2652 6 6 2.0140 -2.9040 0.0296 7 7 1.6516 -2.1377 -1.1704 8 6 0.9740 -2.7210 -2.1789 9 8 0.7680 -2.1084 -3.2052 10 6 0.4723 -4.1344 -2.0314 11 16 -0.3918 -4.6288 -3.5430 12 6 -0.8570 -6.2712 -3.1063 13 1 -0.5893 -6.6690 -2.1385 14 6 -1.5665 -7.0541 -4.0063 15 7 -1.8923 -6.5693 -5.1860 16 14 -2.0591 -8.7955 -3.5436 17 1 -1.5757 -9.0989 -2.1726 18 1 -3.5383 -8.9194 -3.5862 19 1 -1.4542 -9.7529 -4.5044 20 6 2.0413 -0.7233 -1.2499 21 1 3.1274 -0.6457 -1.2983 22 6 1.4255 -0.0879 -2.4982 23 6 1.7966 1.3954 -2.5512 24 8 1.1301 2.0140 -3.6536 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 0.5137 0.8901 28 1 3.1307 -0.7441 1.2354 29 1 1.6988 -0.1953 2.1389 30 1 0.4134 -2.1359 1.2533 31 1 1.8478 -2.6639 2.1660 32 1 1.5555 -3.8918 -0.0152 33 1 3.0978 -3.0064 0.0842 34 1 1.3158 -4.8031 -1.8593 35 1 -0.2138 -4.1900 -1.1863 36 1 -2.3885 -7.1164 -5.8149 37 1 1.8071 -0.5900 -3.3872 38 1 0.3410 -0.1901 -2.4605 39 1 1.4912 1.8798 -1.6238 40 1 2.8748 1.4961 -2.6757 41 1 1.3199 2.9575 -3.7488 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000598069231.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:55 Heat of formation + Delta-G solvation = -107.545773 kcal Electronic energy + Delta-G solvation = -21675.524262 eV Core-core repulsion = 18487.771675 eV Total energy + Delta-G solvation = -3187.752587 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 287.134 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.80310 -38.84525 -37.79616 -35.03977 -34.59969 -33.89346 -31.01353 -30.06742 -27.78826 -27.58461 -25.72817 -24.57950 -22.14652 -21.49689 -19.86260 -19.21219 -18.41623 -17.63362 -17.15264 -16.89471 -16.72844 -16.47353 -15.82785 -15.43985 -15.34224 -14.79727 -14.72232 -14.47252 -14.33753 -14.12793 -13.59862 -13.47780 -13.18025 -12.92974 -12.85425 -12.74718 -12.62642 -12.50829 -12.19584 -11.88036 -11.81438 -11.69850 -11.37780 -11.32320 -11.16831 -10.79711 -10.25678 -10.00550 -9.52520 -8.67814 -8.35646 -6.13944 1.25488 1.40426 1.45371 1.56564 1.62406 2.10129 2.26699 2.98519 3.18512 3.35905 3.70678 3.83189 3.86771 3.95377 4.08997 4.17165 4.24582 4.27327 4.36227 4.42884 4.47855 4.52111 4.58520 4.64849 4.72194 4.79253 4.87860 4.99291 5.08005 5.17708 5.23648 5.26493 5.32984 5.40289 5.44743 5.53468 5.78418 6.18691 6.36599 6.97283 7.05485 7.24229 8.73974 Molecular weight = 287.13amu Principal moments of inertia in cm(-1) A = 0.021507 B = 0.004399 C = 0.003825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1301.599389 B = 6364.171878 C = 7317.629524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.099 4.099 3 H 0.104 0.896 4 C -0.108 4.108 5 C -0.135 4.135 6 C 0.098 3.902 7 N -0.602 5.602 8 C 0.529 3.471 9 O -0.550 6.550 10 C -0.124 4.124 11 S -0.152 6.152 12 C -0.545 4.545 13 H 0.081 0.919 14 C 0.014 3.986 15 N -0.912 5.912 16 Si 0.999 3.001 17 H -0.256 1.256 18 H -0.274 1.274 19 H -0.273 1.273 20 C 0.157 3.843 21 H 0.090 0.910 22 C -0.112 4.112 23 C 0.073 3.927 24 O -0.600 6.600 25 H 0.038 0.962 26 H 0.039 0.961 27 H 0.071 0.929 28 H 0.081 0.919 29 H 0.082 0.918 30 H 0.057 0.943 31 H 0.099 0.901 32 H 0.082 0.918 33 H 0.091 0.909 34 H 0.103 0.897 35 H 0.100 0.900 36 H 0.271 0.729 37 H 0.058 0.942 38 H 0.047 0.953 39 H 0.068 0.932 40 H 0.060 0.940 41 H 0.395 0.605 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.386 14.224 17.625 25.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.118 4.118 3 H 0.122 0.878 4 C -0.146 4.146 5 C -0.173 4.173 6 C -0.024 4.024 7 N -0.336 5.336 8 C 0.317 3.683 9 O -0.428 6.428 10 C -0.275 4.275 11 S 0.075 5.925 12 C -0.693 4.693 13 H 0.099 0.901 14 C -0.191 4.191 15 N -0.549 5.549 16 Si 0.821 3.179 17 H -0.179 1.179 18 H -0.199 1.199 19 H -0.198 1.198 20 C 0.054 3.946 21 H 0.108 0.892 22 C -0.150 4.150 23 C -0.004 4.004 24 O -0.408 6.408 25 H 0.057 0.943 26 H 0.058 0.942 27 H 0.090 0.910 28 H 0.100 0.900 29 H 0.101 0.899 30 H 0.076 0.924 31 H 0.117 0.883 32 H 0.101 0.899 33 H 0.109 0.891 34 H 0.122 0.878 35 H 0.118 0.882 36 H 0.080 0.920 37 H 0.077 0.923 38 H 0.066 0.934 39 H 0.086 0.914 40 H 0.079 0.921 41 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges 10.793 14.502 15.898 24.074 hybrid contribution -0.257 -1.269 0.732 1.487 sum 10.536 13.234 16.630 23.721 Atomic orbital electron populations 1.21884 0.96006 1.01112 1.01489 1.21620 0.95681 1.00412 0.94091 0.87780 1.21560 1.01374 0.94687 0.96931 1.21986 1.01142 0.96808 0.97396 1.22054 1.01629 0.95281 0.83386 1.48068 1.55887 1.11389 1.18291 1.20094 0.77536 0.87442 0.83277 1.90763 1.57744 1.64160 1.30100 1.23411 1.03689 0.96919 1.03493 1.85597 1.70572 1.16878 1.19428 1.23224 1.41966 0.99133 1.04979 0.90054 1.26138 0.94767 1.04030 0.94164 1.70204 1.37915 1.39006 1.07763 0.84899 0.78034 0.76036 0.78930 1.17949 1.19896 1.19837 1.21278 0.99078 0.79294 0.94935 0.89212 1.21894 1.01028 0.94057 0.98007 1.22419 0.96054 0.92934 0.89018 1.86526 1.73357 1.29000 1.51947 0.94326 0.94218 0.90971 0.90024 0.89894 0.92422 0.88309 0.89945 0.89058 0.87844 0.88213 0.91998 0.92295 0.93430 0.91399 0.92135 0.75506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.14 8.20 71.98 0.59 -2.55 16 2 C -0.10 -1.63 2.25 -10.72 -0.02 -1.65 16 3 H 0.10 1.25 6.62 -2.38 -0.02 1.24 16 4 C -0.11 -1.28 5.44 30.64 0.17 -1.11 16 5 C -0.14 -1.96 5.74 30.69 0.18 -1.79 16 6 C 0.10 1.90 6.35 86.36 0.55 2.45 16 7 N -0.60 -16.55 2.41 -795.03 -1.92 -18.47 16 8 C 0.53 20.68 7.55 87.66 0.66 21.34 16 9 O -0.55 -26.21 11.43 -3.02 -0.03 -26.24 16 10 C -0.12 -5.18 4.51 71.24 0.32 -4.86 16 11 S -0.15 -8.72 20.57 -56.49 -1.16 -9.88 16 12 C -0.55 -31.82 9.50 67.95 0.65 -31.18 16 13 H 0.08 4.42 7.80 -2.91 -0.02 4.40 16 14 C 0.01 0.79 5.49 84.86 0.47 1.25 16 15 N -0.91 -57.16 13.22 21.65 0.29 -56.87 16 16 Si 1.00 44.24 29.55 68.60 2.03 46.27 16 17 H -0.26 -10.54 7.11 99.48 0.71 -9.84 16 18 H -0.27 -11.74 7.11 99.48 0.71 -11.04 16 19 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 20 C 0.16 3.62 2.73 44.98 0.12 3.74 16 21 H 0.09 1.72 8.14 -2.39 -0.02 1.71 16 22 C -0.11 -3.44 3.02 30.60 0.09 -3.35 16 23 C 0.07 1.62 6.77 71.98 0.49 2.11 16 24 O -0.60 -15.69 13.66 -148.98 -2.03 -17.72 16 25 H 0.04 0.99 5.97 -2.39 -0.01 0.98 16 26 H 0.04 1.01 6.36 -2.39 -0.02 0.99 16 27 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 28 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 29 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 30 H 0.06 1.04 6.33 -2.39 -0.02 1.03 16 31 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 32 H 0.08 1.72 5.93 -2.39 -0.01 1.70 16 33 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 34 H 0.10 3.93 7.72 -2.39 -0.02 3.91 16 35 H 0.10 3.87 7.92 -2.39 -0.02 3.85 16 36 H 0.27 15.69 8.31 -92.70 -0.77 14.92 16 37 H 0.06 2.31 6.25 -2.39 -0.01 2.30 16 38 H 0.05 1.80 5.53 -2.39 -0.01 1.79 16 39 H 0.07 1.13 6.28 -2.39 -0.02 1.12 16 40 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 41 H 0.40 5.61 9.12 -74.05 -0.68 4.94 16 Total: -1.00 -81.27 326.86 1.78 -79.49 By element: Atomic # 1 Polarization: 18.66 SS G_CDS: 0.36 Total: 19.02 kcal Atomic # 6 Polarization: -19.85 SS G_CDS: 4.25 Total: -15.59 kcal Atomic # 7 Polarization: -73.71 SS G_CDS: -1.63 Total: -75.34 kcal Atomic # 8 Polarization: -41.89 SS G_CDS: -2.07 Total: -43.96 kcal Atomic # 14 Polarization: 44.24 SS G_CDS: 2.03 Total: 46.27 kcal Atomic # 16 Polarization: -8.72 SS G_CDS: -1.16 Total: -9.88 kcal Total: -81.27 1.78 -79.49 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598069231.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.060 kcal (2) G-P(sol) polarization free energy of solvation -81.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.486 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds