Wall clock time and date at job start Tue Mar 31 2020 06:11:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.53006 * 109.47127 * 240.00501 * 2 1 3 5 5 C 1.50695 * 109.47196 * 64.99596 * 4 2 1 6 6 H 1.07999 * 120.00313 * 0.02562 * 5 4 2 7 7 C 1.37882 * 119.99880 * 179.97438 * 5 4 2 8 8 N 1.31508 * 120.00054 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 119.99981 * 180.02562 * 7 5 4 10 10 H 1.48503 * 109.47023 * 60.00414 * 9 7 5 11 11 H 1.48496 * 109.47177 * 180.02562 * 9 7 5 12 12 H 1.48505 * 109.47330 * 300.00546 * 9 7 5 13 13 C 1.52992 * 109.47482 * 120.00154 * 2 1 3 14 14 N 1.46497 * 109.47408 * 295.00294 * 13 2 1 15 15 C 1.39674 * 120.00335 * 179.97438 * 14 13 2 16 16 C 1.38924 * 120.07506 * 359.72341 * 15 14 13 17 17 C 1.38088 * 119.92548 * 179.79142 * 16 15 14 18 18 C 1.38298 * 120.07485 * 0.48290 * 17 16 15 19 19 C 1.38265 * 120.14968 * 359.74653 * 18 17 16 20 20 C 1.50698 * 119.96464 * 179.97438 * 19 18 17 21 21 F 1.39901 * 109.47096 * 270.02289 * 20 19 18 22 22 F 1.39900 * 109.47225 * 30.02338 * 20 19 18 23 23 F 1.39902 * 109.47557 * 150.02247 * 20 19 18 24 24 C 1.38123 * 120.07300 * 0.02562 * 19 18 17 25 25 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 26 26 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 28 28 H 1.09007 * 109.47135 * 184.99942 * 4 2 1 29 29 H 1.08996 * 109.46945 * 304.99450 * 4 2 1 30 30 H 0.97003 * 120.00316 * 180.02562 * 8 7 5 31 31 H 1.09002 * 109.46906 * 55.00224 * 13 2 1 32 32 H 1.09006 * 109.47717 * 174.99599 * 13 2 1 33 33 H 0.97008 * 119.99817 * 359.97438 * 14 13 2 34 34 H 1.08000 * 120.03704 * 359.97438 * 16 15 14 35 35 H 1.08003 * 119.96045 * 180.20837 * 17 16 15 36 36 H 1.07997 * 119.92794 * 179.77103 * 18 17 16 37 37 H 1.08002 * 120.03874 * 179.97438 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2494 5 6 1.6413 0.0571 -2.4766 6 1 1.0806 0.9746 -2.3757 7 6 1.9932 -0.4015 -3.7284 8 7 2.6764 -1.5185 -3.8513 9 14 1.4996 0.5636 -5.2496 10 1 2.0917 1.9240 -5.1865 11 1 1.9945 -0.1364 -6.4621 12 1 0.0196 0.6703 -5.3096 13 6 2.0400 -0.7212 1.2491 14 7 1.6525 0.0352 2.4423 15 6 2.0081 -0.4301 3.7104 16 6 2.7245 -1.6131 3.8422 17 6 3.0782 -2.0680 5.0971 18 6 2.7116 -1.3526 6.2224 19 6 1.9945 -0.1773 6.0951 20 6 1.5967 0.5987 7.3242 21 9 0.3461 0.1574 7.7697 22 9 2.5476 0.3980 8.3305 23 9 1.5270 1.9610 7.0135 24 6 1.6415 0.2859 4.8426 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5139 -0.8900 28 1 3.1264 -0.7994 -1.2057 29 1 1.6055 -1.7197 -1.2953 30 1 2.9243 -1.8410 -4.7319 31 1 1.6055 -1.7198 1.2950 32 1 3.1264 -0.7995 1.2055 33 1 1.1488 0.8594 2.3517 34 1 3.0069 -2.1748 2.9641 35 1 3.6380 -2.9859 5.2001 36 1 2.9863 -1.7125 7.2029 37 1 1.0810 1.2038 4.7438 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602488915.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:24 Heat of formation + Delta-G solvation = -146.639290 kcal Electronic energy + Delta-G solvation = -21896.176658 eV Core-core repulsion = 18029.428158 eV Total energy + Delta-G solvation = -3866.748501 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 287.119 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -50.27156 -47.78785 -47.73598 -39.66408 -36.87308 -34.21096 -32.21821 -31.82835 -29.36840 -26.95519 -26.34733 -25.57847 -23.03994 -22.70110 -21.22842 -19.43964 -18.60612 -18.45476 -18.42398 -16.62956 -16.27867 -16.06716 -15.39621 -14.74742 -14.63699 -14.59427 -14.49752 -14.20515 -14.02500 -13.90095 -13.80247 -13.70934 -13.34658 -12.89098 -12.66821 -12.41999 -12.08187 -11.74792 -11.60418 -11.23819 -10.99954 -10.95288 -10.49604 -10.44598 -10.23529 -9.84148 -9.39026 -9.27154 -9.13787 -8.42844 -7.44898 -6.07560 -4.09822 0.93116 1.41026 2.54587 3.28128 3.33326 3.34773 3.44634 3.53572 3.68248 3.98593 4.33329 4.39781 4.75436 4.99874 5.09556 5.28095 5.29532 5.39474 5.47202 5.55965 5.69490 5.81855 6.04035 6.09238 6.16471 6.25122 6.32136 6.33513 6.56644 6.75829 6.91107 6.95701 7.33975 7.54080 7.67208 7.76510 7.90373 8.32458 8.95520 9.54348 11.03768 Molecular weight = 287.12amu Principal moments of inertia in cm(-1) A = 0.037478 B = 0.002745 C = 0.002632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 746.928689 B =10199.767738 C =10637.473807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.097 4.097 3 H 0.063 0.937 4 C 0.031 3.969 5 C -0.519 4.519 6 H 0.056 0.944 7 C 0.058 3.942 8 N -0.895 5.895 9 Si 0.891 3.109 10 H -0.277 1.277 11 H -0.287 1.287 12 H -0.277 1.277 13 C 0.123 3.877 14 N -0.735 5.735 15 C 0.226 3.774 16 C -0.170 4.170 17 C -0.070 4.070 18 C -0.145 4.145 19 C -0.135 4.135 20 C 0.508 3.492 21 F -0.179 7.179 22 F -0.179 7.179 23 F -0.179 7.179 24 C -0.160 4.160 25 H 0.030 0.970 26 H 0.047 0.953 27 H 0.064 0.936 28 H 0.017 0.983 29 H 0.019 0.981 30 H 0.262 0.738 31 H 0.059 0.941 32 H 0.059 0.941 33 H 0.401 0.599 34 H 0.133 0.867 35 H 0.131 0.869 36 H 0.127 0.873 37 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.023 1.144 20.789 20.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.115 4.115 3 H 0.081 0.919 4 C -0.006 4.006 5 C -0.557 4.557 6 H 0.074 0.926 7 C -0.144 4.144 8 N -0.534 5.534 9 Si 0.719 3.281 10 H -0.202 1.202 11 H -0.213 1.213 12 H -0.202 1.202 13 C 0.000 4.000 14 N -0.362 5.362 15 C 0.119 3.881 16 C -0.193 4.193 17 C -0.089 4.089 18 C -0.165 4.165 19 C -0.137 4.137 20 C 0.454 3.546 21 F -0.160 7.160 22 F -0.160 7.160 23 F -0.160 7.160 24 C -0.183 4.183 25 H 0.049 0.951 26 H 0.066 0.934 27 H 0.083 0.917 28 H 0.036 0.964 29 H 0.037 0.963 30 H 0.071 0.929 31 H 0.077 0.923 32 H 0.078 0.922 33 H 0.236 0.764 34 H 0.150 0.850 35 H 0.149 0.851 36 H 0.145 0.855 37 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -0.899 0.929 20.477 20.517 hybrid contribution -0.492 0.931 -0.768 1.304 sum -1.391 1.860 19.708 19.844 Atomic orbital electron populations 1.21731 0.95820 1.01178 1.00275 1.21453 0.95724 0.99880 0.94487 0.91862 1.19072 0.96260 0.95541 0.89777 1.21143 1.35230 1.08424 0.90912 0.92588 1.25007 0.95162 0.95062 0.99144 1.69940 1.38642 1.21106 1.23713 0.86670 0.78907 0.80112 0.82393 1.20249 1.21280 1.20248 1.21716 0.99275 0.95257 0.83748 1.45085 1.60631 1.28037 1.02434 1.17750 0.92417 0.92379 0.85517 1.20976 1.02875 0.96830 0.98586 1.20866 0.97697 0.98980 0.91313 1.20580 1.01405 0.94876 0.99651 1.19565 1.04614 0.97980 0.91505 1.18397 0.74687 0.77632 0.83905 1.93216 1.42925 1.89274 1.90594 1.93175 1.64587 1.94808 1.63457 1.93185 1.96128 1.33790 1.92918 1.20251 1.05916 1.01968 0.90140 0.95091 0.93405 0.91666 0.96430 0.96283 0.92874 0.92306 0.92236 0.76424 0.84962 0.85132 0.85482 0.85221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.26 8.88 37.16 0.33 -1.93 16 2 C -0.10 -1.76 2.37 -90.62 -0.22 -1.98 16 3 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 4 C 0.03 0.74 4.45 -27.88 -0.12 0.61 16 5 C -0.52 -13.81 8.41 -34.44 -0.29 -14.10 16 6 H 0.06 1.45 7.06 -52.49 -0.37 1.07 16 7 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 8 N -0.89 -25.96 13.29 55.43 0.74 -25.23 16 9 Si 0.89 21.00 29.54 -169.99 -5.02 15.98 16 10 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 11 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 12 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 13 C 0.12 1.87 4.30 -4.05 -0.02 1.86 16 14 N -0.74 -9.66 5.46 -58.64 -0.32 -9.98 16 15 C 0.23 2.86 6.65 -83.79 -0.56 2.31 16 16 C -0.17 -2.02 9.31 -39.38 -0.37 -2.39 16 17 C -0.07 -0.72 10.04 -39.61 -0.40 -1.12 16 18 C -0.14 -1.52 9.40 -39.55 -0.37 -1.90 16 19 C -0.13 -1.55 5.45 -104.66 -0.57 -2.12 16 20 C 0.51 5.68 3.36 36.00 0.12 5.81 16 21 F -0.18 -2.07 17.30 2.25 0.04 -2.03 16 22 F -0.18 -1.97 16.46 2.25 0.04 -1.93 16 23 F -0.18 -2.07 16.46 2.25 0.04 -2.03 16 24 C -0.16 -1.90 9.25 -39.38 -0.36 -2.27 16 25 H 0.03 0.44 7.18 -51.93 -0.37 0.06 16 26 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 27 H 0.06 1.22 6.95 -51.93 -0.36 0.85 16 28 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.26 7.21 8.31 -40.82 -0.34 6.88 16 31 H 0.06 0.90 7.94 -51.93 -0.41 0.48 16 32 H 0.06 0.92 7.96 -51.93 -0.41 0.51 16 33 H 0.40 4.86 7.67 -40.82 -0.31 4.55 16 34 H 0.13 1.53 6.74 -52.49 -0.35 1.17 16 35 H 0.13 1.01 8.06 -52.48 -0.42 0.59 16 36 H 0.13 1.12 7.60 -52.49 -0.40 0.72 16 37 H 0.13 1.40 7.60 -52.49 -0.40 1.00 16 LS Contribution 322.77 15.07 4.86 4.86 Total: -1.00 -28.14 322.77 -7.19 -35.33 By element: Atomic # 1 Polarization: 5.39 SS G_CDS: -4.64 Total: 0.74 kcal Atomic # 6 Polarization: -12.80 SS G_CDS: -2.92 Total: -15.72 kcal Atomic # 7 Polarization: -35.62 SS G_CDS: 0.42 Total: -35.21 kcal Atomic # 9 Polarization: -6.10 SS G_CDS: 0.11 Total: -5.99 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -28.14 -7.19 -35.33 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602488915.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -111.311 kcal (2) G-P(sol) polarization free energy of solvation -28.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.328 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds