Wall clock time and date at job start Tue Mar 31 2020 06:11:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.53006 * 109.47127 * 240.00501 * 2 1 3 5 5 C 1.50695 * 109.47196 * 64.99596 * 4 2 1 6 6 H 1.07999 * 120.00313 * 0.02562 * 5 4 2 7 7 C 1.37882 * 119.99880 * 179.97438 * 5 4 2 8 8 N 1.31508 * 120.00054 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 119.99981 * 180.02562 * 7 5 4 10 10 H 1.48503 * 109.47023 * 60.00414 * 9 7 5 11 11 H 1.48496 * 109.47177 * 180.02562 * 9 7 5 12 12 H 1.48505 * 109.47330 * 300.00546 * 9 7 5 13 13 C 1.52992 * 109.47482 * 120.00154 * 2 1 3 14 14 N 1.46497 * 109.47408 * 295.00294 * 13 2 1 15 15 C 1.39674 * 120.00335 * 179.97438 * 14 13 2 16 16 C 1.38924 * 120.07506 * 359.72341 * 15 14 13 17 17 C 1.38088 * 119.92548 * 179.79142 * 16 15 14 18 18 C 1.38298 * 120.07485 * 0.48290 * 17 16 15 19 19 C 1.38265 * 120.14968 * 359.74653 * 18 17 16 20 20 C 1.50698 * 119.96464 * 179.97438 * 19 18 17 21 21 F 1.39901 * 109.47096 * 270.02289 * 20 19 18 22 22 F 1.39900 * 109.47225 * 30.02338 * 20 19 18 23 23 F 1.39902 * 109.47557 * 150.02247 * 20 19 18 24 24 C 1.38123 * 120.07300 * 0.02562 * 19 18 17 25 25 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 26 26 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 28 28 H 1.09007 * 109.47135 * 184.99942 * 4 2 1 29 29 H 1.08996 * 109.46945 * 304.99450 * 4 2 1 30 30 H 0.97003 * 120.00316 * 180.02562 * 8 7 5 31 31 H 1.09002 * 109.46906 * 55.00224 * 13 2 1 32 32 H 1.09006 * 109.47717 * 174.99599 * 13 2 1 33 33 H 0.97008 * 119.99817 * 359.97438 * 14 13 2 34 34 H 1.08000 * 120.03704 * 359.97438 * 16 15 14 35 35 H 1.08003 * 119.96045 * 180.20837 * 17 16 15 36 36 H 1.07997 * 119.92794 * 179.77103 * 18 17 16 37 37 H 1.08002 * 120.03874 * 179.97438 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2494 5 6 1.6413 0.0571 -2.4766 6 1 1.0806 0.9746 -2.3757 7 6 1.9932 -0.4015 -3.7284 8 7 2.6764 -1.5185 -3.8513 9 14 1.4996 0.5636 -5.2496 10 1 2.0917 1.9240 -5.1865 11 1 1.9945 -0.1364 -6.4621 12 1 0.0196 0.6703 -5.3096 13 6 2.0400 -0.7212 1.2491 14 7 1.6525 0.0352 2.4423 15 6 2.0081 -0.4301 3.7104 16 6 2.7245 -1.6131 3.8422 17 6 3.0782 -2.0680 5.0971 18 6 2.7116 -1.3526 6.2224 19 6 1.9945 -0.1773 6.0951 20 6 1.5967 0.5987 7.3242 21 9 0.3461 0.1574 7.7697 22 9 2.5476 0.3980 8.3305 23 9 1.5270 1.9610 7.0135 24 6 1.6415 0.2859 4.8426 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5139 -0.8900 28 1 3.1264 -0.7994 -1.2057 29 1 1.6055 -1.7197 -1.2953 30 1 2.9243 -1.8410 -4.7319 31 1 1.6055 -1.7198 1.2950 32 1 3.1264 -0.7995 1.2055 33 1 1.1488 0.8594 2.3517 34 1 3.0069 -2.1748 2.9641 35 1 3.6380 -2.9859 5.2001 36 1 2.9863 -1.7125 7.2029 37 1 1.0810 1.2038 4.7438 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602488915.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:24 Heat of formation + Delta-G solvation = -160.481217 kcal Electronic energy + Delta-G solvation = -21896.776889 eV Core-core repulsion = 18029.428158 eV Total energy + Delta-G solvation = -3867.348732 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 287.119 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -51.15464 -48.66825 -48.62471 -40.58794 -38.17195 -35.67462 -34.01880 -32.70292 -30.53937 -28.70704 -27.37788 -26.75980 -24.76608 -23.59065 -22.25499 -20.89695 -19.49076 -19.38687 -19.33137 -18.53333 -17.22141 -17.12967 -16.66762 -16.27432 -16.01821 -15.52254 -15.51006 -15.08500 -14.90352 -14.86283 -14.78643 -14.70111 -14.51101 -14.32849 -14.14039 -13.61125 -13.43103 -13.33561 -12.79068 -12.71091 -12.54584 -12.28587 -12.15716 -11.97893 -11.71664 -11.17946 -11.06457 -11.04032 -10.53077 -10.13779 -8.43048 -8.18030 -6.26763 0.04450 0.53650 1.41385 1.42796 1.50497 1.66213 2.37984 2.46801 2.65058 2.78532 3.10416 3.16279 3.45640 3.92100 4.04434 4.16641 4.17854 4.23176 4.36559 4.46942 4.57401 4.76231 4.77520 4.89772 4.93182 5.16676 5.22208 5.31029 5.31338 5.45719 5.47841 5.52028 5.71041 5.77748 5.86777 6.23511 6.33739 6.78700 6.89232 7.41680 8.93635 Molecular weight = 287.12amu Principal moments of inertia in cm(-1) A = 0.037478 B = 0.002745 C = 0.002632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 746.928689 B =10199.767738 C =10637.473807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.086 4.086 3 H 0.063 0.937 4 C 0.035 3.965 5 C -0.532 4.532 6 H 0.062 0.938 7 C 0.000 4.000 8 N -0.933 5.933 9 Si 0.957 3.043 10 H -0.269 1.269 11 H -0.286 1.286 12 H -0.268 1.268 13 C 0.140 3.860 14 N -0.735 5.735 15 C 0.211 3.789 16 C -0.181 4.181 17 C -0.067 4.067 18 C -0.142 4.142 19 C -0.144 4.144 20 C 0.512 3.488 21 F -0.181 7.181 22 F -0.177 7.177 23 F -0.182 7.182 24 C -0.163 4.163 25 H 0.063 0.937 26 H 0.042 0.958 27 H 0.046 0.954 28 H -0.008 1.008 29 H -0.005 1.005 30 H 0.262 0.738 31 H 0.058 0.942 32 H 0.053 0.947 33 H 0.406 0.594 34 H 0.131 0.869 35 H 0.158 0.842 36 H 0.147 0.853 37 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.448 1.728 21.947 22.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.105 4.105 3 H 0.081 0.919 4 C -0.003 4.003 5 C -0.570 4.570 6 H 0.080 0.920 7 C -0.197 4.197 8 N -0.574 5.574 9 Si 0.782 3.218 10 H -0.194 1.194 11 H -0.212 1.212 12 H -0.193 1.193 13 C 0.016 3.984 14 N -0.364 5.364 15 C 0.105 3.895 16 C -0.204 4.204 17 C -0.085 4.085 18 C -0.162 4.162 19 C -0.146 4.146 20 C 0.458 3.542 21 F -0.162 7.162 22 F -0.158 7.158 23 F -0.163 7.163 24 C -0.186 4.186 25 H 0.082 0.918 26 H 0.061 0.939 27 H 0.065 0.935 28 H 0.011 0.989 29 H 0.014 0.986 30 H 0.071 0.929 31 H 0.076 0.924 32 H 0.072 0.928 33 H 0.242 0.758 34 H 0.149 0.851 35 H 0.176 0.824 36 H 0.164 0.836 37 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -1.332 1.527 21.668 21.762 hybrid contribution -0.328 0.716 -1.028 1.294 sum -1.660 2.242 20.640 20.828 Atomic orbital electron populations 1.21645 0.94602 1.01094 1.00983 1.21212 0.96617 0.99268 0.93411 0.91895 1.18949 0.94578 0.94770 0.91981 1.21604 1.34638 1.08674 0.92045 0.92000 1.25893 0.95268 0.96037 1.02523 1.70072 1.40101 1.22829 1.24379 0.85616 0.78902 0.78816 0.78421 1.19361 1.21198 1.19301 1.21316 0.98737 0.94948 0.83397 1.44811 1.61384 1.28198 1.01961 1.17860 0.93309 0.93025 0.85275 1.21164 1.03004 0.96789 0.99433 1.21175 0.97154 0.99718 0.90454 1.20895 1.00321 0.94261 1.00705 1.19696 1.05018 0.98512 0.91406 1.18330 0.74581 0.77443 0.83847 1.93212 1.43126 1.89286 1.90623 1.93178 1.64492 1.94783 1.63378 1.93179 1.96138 1.34044 1.92945 1.20343 1.05944 1.02243 0.90083 0.91793 0.93876 0.93460 0.98928 0.98620 0.92914 0.92395 0.92833 0.75832 0.85079 0.82432 0.83554 0.84473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.18 8.88 71.98 0.64 -3.54 16 2 C -0.09 -3.13 2.37 -10.79 -0.03 -3.16 16 3 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 4 C 0.03 1.70 4.45 29.85 0.13 1.83 16 5 C -0.53 -28.59 8.41 25.60 0.22 -28.37 16 6 H 0.06 3.18 7.06 -2.91 -0.02 3.16 16 7 C 0.00 0.03 5.46 84.66 0.46 0.49 16 8 N -0.93 -55.27 13.29 21.45 0.28 -54.98 16 9 Si 0.96 43.12 29.54 68.60 2.03 45.14 16 10 H -0.27 -11.65 7.11 99.48 0.71 -10.95 16 11 H -0.29 -12.77 7.11 99.48 0.71 -12.06 16 12 H -0.27 -11.60 7.11 99.48 0.71 -10.90 16 13 C 0.14 4.21 4.30 86.38 0.37 4.58 16 14 N -0.74 -18.42 5.46 -339.43 -1.85 -20.28 16 15 C 0.21 5.05 6.65 38.21 0.25 5.30 16 16 C -0.18 -4.05 9.31 22.40 0.21 -3.84 16 17 C -0.07 -1.21 10.04 22.25 0.22 -0.99 16 18 C -0.14 -2.63 9.40 22.29 0.21 -2.42 16 19 C -0.14 -3.05 5.45 -19.89 -0.11 -3.16 16 20 C 0.51 10.56 3.36 71.24 0.24 10.80 16 21 F -0.18 -3.89 17.30 44.97 0.78 -3.11 16 22 F -0.18 -3.55 16.46 44.97 0.74 -2.81 16 23 F -0.18 -3.93 16.46 44.97 0.74 -3.19 16 24 C -0.16 -3.63 9.25 22.40 0.21 -3.42 16 25 H 0.06 1.69 7.18 -2.39 -0.02 1.67 16 26 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 27 H 0.05 1.72 6.95 -2.38 -0.02 1.71 16 28 H -0.01 -0.41 8.14 -2.38 -0.02 -0.43 16 29 H 0.00 -0.24 8.14 -2.39 -0.02 -0.26 16 30 H 0.26 14.72 8.31 -92.71 -0.77 13.95 16 31 H 0.06 1.75 7.94 -2.39 -0.02 1.73 16 32 H 0.05 1.66 7.96 -2.38 -0.02 1.65 16 33 H 0.41 9.18 7.67 -92.70 -0.71 8.47 16 34 H 0.13 2.92 6.74 -2.91 -0.02 2.90 16 35 H 0.16 1.95 8.06 -2.91 -0.02 1.93 16 36 H 0.15 2.13 7.60 -2.91 -0.02 2.10 16 37 H 0.14 2.75 7.60 -2.91 -0.02 2.73 16 Total: -1.00 -60.14 322.77 6.13 -54.02 By element: Atomic # 1 Polarization: 10.73 SS G_CDS: 0.38 Total: 11.11 kcal Atomic # 6 Polarization: -28.93 SS G_CDS: 3.03 Total: -25.90 kcal Atomic # 7 Polarization: -73.69 SS G_CDS: -1.57 Total: -75.26 kcal Atomic # 9 Polarization: -11.37 SS G_CDS: 2.26 Total: -9.11 kcal Atomic # 14 Polarization: 43.12 SS G_CDS: 2.03 Total: 45.14 kcal Total: -60.14 6.13 -54.02 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602488915.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.464 kcal (2) G-P(sol) polarization free energy of solvation -60.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -166.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.017 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds