Wall clock time and date at job start Tue Mar 31 2020 05:57:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08991 * 109.39713 * 2 1 4 4 C 1.55232 * 109.43267 * 240.11102 * 2 1 3 5 5 C 1.45108 * 110.06135 * 167.68933 * 4 2 1 6 6 N 1.47011 * 115.50073 * 63.43567 * 5 4 2 7 7 C 1.46898 * 111.00175 * 143.21627 * 6 5 4 8 8 C 1.52995 * 109.47346 * 177.39356 * 7 6 5 9 9 C 1.50703 * 115.55397 * 268.45093 * 8 7 6 10 10 H 1.07996 * 119.99780 * 140.40995 * 9 8 7 11 11 C 1.37875 * 119.99913 * 320.41815 * 9 8 7 12 12 N 1.31514 * 119.99897 * 343.50333 * 11 9 8 13 13 Si 1.86793 * 120.00000 * 163.50503 * 11 9 8 14 14 H 1.48503 * 109.47270 * 359.97438 * 13 11 9 15 15 H 1.48500 * 109.47096 * 119.99808 * 13 11 9 16 16 H 1.48504 * 109.47257 * 239.99674 * 13 11 9 17 17 C 1.53004 * 117.49539 * 54.12194 * 8 7 6 18 18 C 1.53006 * 60.03081 * 107.49953 * 17 8 7 19 19 C 1.45428 * 105.31997 * 263.42831 * 6 5 4 20 20 C 1.54642 * 108.86760 * 107.54228 * 19 6 5 21 21 S 1.79281 * 109.42894 * 119.88720 * 2 1 3 22 22 O 1.42098 * 107.93130 * 322.87891 * 21 2 1 23 23 O 1.42093 * 107.93294 * 92.23832 * 21 2 1 24 24 H 1.09001 * 109.47462 * 179.88296 * 1 2 3 25 25 H 1.08998 * 109.47345 * 299.88509 * 1 2 3 26 26 H 1.09002 * 109.47157 * 59.88531 * 1 2 3 27 27 H 1.09009 * 109.37061 * 47.50960 * 4 2 1 28 28 H 1.08999 * 109.27977 * 287.81048 * 4 2 1 29 29 H 1.09004 * 108.27667 * 301.86894 * 5 4 2 30 30 H 1.09000 * 108.28013 * 185.00210 * 5 4 2 31 31 H 1.09004 * 109.46842 * 57.39570 * 7 6 5 32 32 H 1.08997 * 109.47474 * 297.40165 * 7 6 5 33 33 H 0.96999 * 119.99997 * 175.11774 * 12 11 9 34 34 H 1.09001 * 117.49825 * 214.99902 * 17 8 7 35 35 H 1.08994 * 117.49898 * 0.02562 * 17 8 7 36 36 H 1.09000 * 117.49651 * 107.50023 * 18 17 8 37 37 H 1.08999 * 117.49881 * 252.51958 * 18 17 8 38 38 H 1.09006 * 109.57219 * 227.35616 * 19 6 5 39 39 H 1.08997 * 109.57617 * 347.72411 * 19 6 5 40 40 H 1.09000 * 109.22084 * 200.71521 * 20 19 6 41 41 H 1.08995 * 109.22298 * 81.36498 * 20 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8919 1.0280 0.0000 4 6 2.0464 -0.7295 -1.2692 5 6 3.4679 -0.4907 -1.4368 6 7 4.3286 -1.0173 -0.3677 7 6 5.5934 -1.5276 -0.9134 8 6 6.4870 -2.0063 0.2325 9 6 7.4353 -0.9768 0.7910 10 1 7.6102 -0.9249 1.8554 11 6 8.0794 -0.1010 -0.0570 12 7 8.1325 -0.3535 -1.3466 13 14 8.8767 1.4441 0.6258 14 1 8.6773 1.4956 2.0964 15 1 10.3305 1.4260 0.3233 16 1 8.2559 2.6394 0.0003 17 6 5.8984 -3.0275 1.2081 18 6 6.9628 -3.4608 0.1979 19 6 4.5620 0.1060 0.5260 20 6 3.7596 -0.1165 1.8290 21 16 2.1263 -0.8425 1.4659 22 8 1.2552 -0.5193 2.5410 23 8 2.3217 -2.2105 1.1352 24 1 -0.3634 -1.0276 -0.0021 25 1 -0.3634 0.5120 0.8910 26 1 -0.3633 0.5156 -0.8890 27 1 1.5117 -0.3571 -2.1430 28 1 1.8694 -1.8000 -1.1661 29 1 3.6279 0.5854 -1.5058 30 1 3.7810 -0.9389 -2.3798 31 1 6.0996 -0.7328 -1.4613 32 1 5.3890 -2.3599 -1.5869 33 1 8.5229 0.2958 -1.9523 34 1 6.1971 -2.9546 2.2538 35 1 4.8748 -3.3585 1.0333 36 1 7.9616 -3.6731 0.5792 37 1 6.6391 -4.0764 -0.6414 38 1 5.6249 0.1727 0.7586 39 1 4.2326 1.0281 0.0473 40 1 3.6230 0.8397 2.3341 41 1 4.3146 -0.7903 2.4817 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602822866.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:34 Heat of formation + Delta-G solvation = -27.235039 kcal Electronic energy + Delta-G solvation = -23038.639836 eV Core-core repulsion = 19854.369784 eV Total energy + Delta-G solvation = -3184.270052 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 287.134 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -38.84728 -36.47919 -36.19529 -35.45854 -34.12755 -32.32746 -30.85373 -29.21334 -25.92305 -24.80127 -23.55027 -22.13777 -21.12192 -20.43366 -18.92717 -18.11586 -16.98113 -16.51616 -15.62784 -15.36046 -15.01792 -14.79053 -14.23825 -14.11767 -13.69415 -13.51666 -13.23048 -12.95362 -12.73168 -12.58398 -12.01287 -11.78315 -11.59797 -11.53346 -11.43161 -11.27407 -11.22005 -10.93027 -10.87448 -10.59388 -10.46324 -10.35232 -10.11257 -10.04244 -9.72671 -9.26828 -9.07914 -8.64167 -8.26766 -7.67145 -6.24288 -4.21639 0.48545 3.12189 3.24547 3.28045 3.30183 4.04831 4.22797 4.23911 4.38034 4.68699 4.84029 4.90343 5.08899 5.25945 5.32980 5.46240 5.50398 5.60425 5.66644 5.76018 5.76908 5.91588 5.98050 6.14165 6.17851 6.28126 6.34595 6.54199 6.61256 6.73274 6.88808 6.96438 7.00751 7.15605 7.38145 7.52244 7.64502 7.81483 7.89430 8.36486 8.75159 9.33246 10.78397 Molecular weight = 287.13amu Principal moments of inertia in cm(-1) A = 0.021306 B = 0.006537 C = 0.006282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1313.879701 B = 4282.250009 C = 4456.324952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.592 4.592 3 H 0.127 0.873 4 C -0.083 4.083 5 C 0.017 3.983 6 N -0.517 5.517 7 C 0.088 3.912 8 C 0.047 3.953 9 C -0.484 4.484 10 H 0.063 0.937 11 C 0.068 3.932 12 N -0.867 5.867 13 Si 0.875 3.125 14 H -0.269 1.269 15 H -0.282 1.282 16 H -0.281 1.281 17 C -0.195 4.195 18 C -0.199 4.199 19 C 0.030 3.970 20 C -0.579 4.579 21 S 2.433 3.567 22 O -0.973 6.973 23 O -0.918 6.918 24 H 0.065 0.935 25 H 0.073 0.927 26 H 0.073 0.927 27 H 0.081 0.919 28 H 0.093 0.907 29 H 0.045 0.955 30 H 0.072 0.928 31 H 0.087 0.913 32 H 0.049 0.951 33 H 0.261 0.739 34 H 0.067 0.933 35 H 0.089 0.911 36 H 0.073 0.927 37 H 0.063 0.937 38 H 0.134 0.866 39 H 0.050 0.950 40 H 0.116 0.884 41 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.956 3.503 -0.752 11.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.701 4.701 3 H 0.145 0.855 4 C -0.122 4.122 5 C -0.111 4.111 6 N -0.241 5.241 7 C -0.038 4.038 8 C 0.046 3.954 9 C -0.521 4.521 10 H 0.081 0.919 11 C -0.135 4.135 12 N -0.504 5.504 13 Si 0.702 3.298 14 H -0.194 1.194 15 H -0.208 1.208 16 H -0.207 1.207 17 C -0.233 4.233 18 C -0.237 4.237 19 C -0.099 4.099 20 C -0.711 4.711 21 S 2.615 3.385 22 O -0.970 6.970 23 O -0.915 6.915 24 H 0.084 0.916 25 H 0.092 0.908 26 H 0.092 0.908 27 H 0.100 0.900 28 H 0.111 0.889 29 H 0.063 0.937 30 H 0.090 0.910 31 H 0.105 0.895 32 H 0.067 0.933 33 H 0.072 0.928 34 H 0.085 0.915 35 H 0.107 0.893 36 H 0.092 0.908 37 H 0.081 0.919 38 H 0.152 0.848 39 H 0.068 0.932 40 H 0.134 0.866 41 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -11.492 2.487 -0.231 11.760 hybrid contribution 1.312 2.142 -0.512 2.563 sum -10.180 4.629 -0.743 11.207 Atomic orbital electron populations 1.21508 0.90352 1.03339 1.03839 1.30432 1.06298 1.13728 1.19608 0.85526 1.20306 0.95709 1.01852 0.94344 1.21150 0.93913 0.99004 0.97056 1.63167 1.17510 1.28488 1.14953 1.21938 0.85464 1.00115 0.96309 1.18881 0.95137 0.87391 0.93966 1.20682 1.23257 1.14873 0.93284 0.91888 1.24961 0.95196 0.98357 0.94997 1.70051 1.43632 1.33885 1.02795 0.86793 0.79557 0.83618 0.79823 1.19357 1.20842 1.20710 1.22855 0.97460 1.08139 0.94805 1.22955 0.97469 1.02446 1.00858 1.22754 1.05624 0.91536 0.90003 1.30638 1.20033 1.12339 1.08071 1.07617 0.77502 0.77405 0.75970 1.93491 1.64879 1.85949 1.52699 1.93519 1.85287 1.29291 1.83442 0.91636 0.90801 0.90815 0.90047 0.88895 0.93697 0.90998 0.89532 0.93284 0.92848 0.91490 0.89275 0.90833 0.91860 0.84803 0.93220 0.86583 0.84506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.42 8.88 37.16 0.33 -1.09 16 2 C -0.59 -7.26 2.58 -25.55 -0.07 -7.33 16 3 H 0.13 1.28 7.80 -51.77 -0.40 0.88 16 4 C -0.08 -1.06 4.87 -29.25 -0.14 -1.20 16 5 C 0.02 0.25 4.75 -7.47 -0.04 0.22 16 6 N -0.52 -9.41 3.14 -239.35 -0.75 -10.16 16 7 C 0.09 1.88 4.43 -3.83 -0.02 1.87 16 8 C 0.05 1.09 1.37 -155.62 -0.21 0.88 16 9 C -0.48 -12.02 6.74 -34.44 -0.23 -12.25 16 10 H 0.06 1.59 7.87 -52.49 -0.41 1.18 16 11 C 0.07 1.68 4.75 -17.82 -0.08 1.60 16 12 N -0.87 -22.21 11.18 55.43 0.62 -21.59 16 13 Si 0.88 19.18 29.57 -169.99 -5.03 14.15 16 14 H -0.27 -5.87 7.11 56.52 0.40 -5.46 16 15 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 16 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 17 C -0.20 -4.29 9.71 -26.73 -0.26 -4.55 16 18 C -0.20 -4.53 9.89 -26.69 -0.26 -4.79 16 19 C 0.03 0.53 5.03 -3.76 -0.02 0.51 16 20 C -0.58 -8.99 6.72 38.02 0.26 -8.73 16 21 S 2.43 38.11 4.50 -107.50 -0.48 37.62 16 22 O -0.97 -17.21 17.18 -57.92 -1.00 -18.21 16 23 O -0.92 -17.39 15.88 -57.92 -0.92 -18.31 16 24 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 25 H 0.07 0.79 7.71 -51.93 -0.40 0.39 16 26 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.08 0.82 8.10 -51.92 -0.42 0.40 16 28 H 0.09 1.29 7.22 -51.93 -0.37 0.92 16 29 H 0.04 0.61 6.49 -51.93 -0.34 0.28 16 30 H 0.07 1.06 7.58 -51.93 -0.39 0.66 16 31 H 0.09 2.01 5.47 -51.93 -0.28 1.73 16 32 H 0.05 1.05 7.84 -51.93 -0.41 0.64 16 33 H 0.26 6.40 8.32 -40.82 -0.34 6.06 16 34 H 0.07 1.44 8.14 -51.93 -0.42 1.02 16 35 H 0.09 1.97 8.14 -51.93 -0.42 1.55 16 36 H 0.07 1.70 8.14 -51.93 -0.42 1.28 16 37 H 0.06 1.37 8.03 -51.93 -0.42 0.96 16 38 H 0.13 2.75 4.38 -51.93 -0.23 2.53 16 39 H 0.05 0.74 6.27 -51.93 -0.33 0.41 16 40 H 0.12 1.44 8.14 -51.93 -0.42 1.02 16 41 H 0.14 2.25 8.14 -51.93 -0.42 1.83 16 LS Contribution 322.59 15.07 4.86 4.86 Total: -1.00 -29.40 322.59 -9.94 -39.35 By element: Atomic # 1 Polarization: 13.65 SS G_CDS: -6.50 Total: 7.15 kcal Atomic # 6 Polarization: -34.12 SS G_CDS: -0.75 Total: -34.87 kcal Atomic # 7 Polarization: -31.61 SS G_CDS: -0.13 Total: -31.75 kcal Atomic # 8 Polarization: -34.60 SS G_CDS: -1.92 Total: -36.52 kcal Atomic # 14 Polarization: 19.18 SS G_CDS: -5.03 Total: 14.15 kcal Atomic # 16 Polarization: 38.11 SS G_CDS: -0.48 Total: 37.62 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -29.40 -9.94 -39.35 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602822866.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.110 kcal (2) G-P(sol) polarization free energy of solvation -29.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.345 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds