Wall clock time and date at job start Tue Mar 31 2020 05:57:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08991 * 109.39713 * 2 1 4 4 C 1.55232 * 109.43267 * 240.11102 * 2 1 3 5 5 C 1.45108 * 110.06135 * 167.68933 * 4 2 1 6 6 N 1.47011 * 115.50073 * 63.43567 * 5 4 2 7 7 C 1.46898 * 111.00175 * 143.21627 * 6 5 4 8 8 C 1.52995 * 109.47346 * 177.39356 * 7 6 5 9 9 C 1.50703 * 115.55397 * 268.45093 * 8 7 6 10 10 H 1.07996 * 119.99780 * 140.40995 * 9 8 7 11 11 C 1.37875 * 119.99913 * 320.41815 * 9 8 7 12 12 N 1.31514 * 119.99897 * 343.50333 * 11 9 8 13 13 Si 1.86793 * 120.00000 * 163.50503 * 11 9 8 14 14 H 1.48503 * 109.47270 * 359.97438 * 13 11 9 15 15 H 1.48500 * 109.47096 * 119.99808 * 13 11 9 16 16 H 1.48504 * 109.47257 * 239.99674 * 13 11 9 17 17 C 1.53004 * 117.49539 * 54.12194 * 8 7 6 18 18 C 1.53006 * 60.03081 * 107.49953 * 17 8 7 19 19 C 1.45428 * 105.31997 * 263.42831 * 6 5 4 20 20 C 1.54642 * 108.86760 * 107.54228 * 19 6 5 21 21 S 1.79281 * 109.42894 * 119.88720 * 2 1 3 22 22 O 1.42098 * 107.93130 * 322.87891 * 21 2 1 23 23 O 1.42093 * 107.93294 * 92.23832 * 21 2 1 24 24 H 1.09001 * 109.47462 * 179.88296 * 1 2 3 25 25 H 1.08998 * 109.47345 * 299.88509 * 1 2 3 26 26 H 1.09002 * 109.47157 * 59.88531 * 1 2 3 27 27 H 1.09009 * 109.37061 * 47.50960 * 4 2 1 28 28 H 1.08999 * 109.27977 * 287.81048 * 4 2 1 29 29 H 1.09004 * 108.27667 * 301.86894 * 5 4 2 30 30 H 1.09000 * 108.28013 * 185.00210 * 5 4 2 31 31 H 1.09004 * 109.46842 * 57.39570 * 7 6 5 32 32 H 1.08997 * 109.47474 * 297.40165 * 7 6 5 33 33 H 0.96999 * 119.99997 * 175.11774 * 12 11 9 34 34 H 1.09001 * 117.49825 * 214.99902 * 17 8 7 35 35 H 1.08994 * 117.49898 * 0.02562 * 17 8 7 36 36 H 1.09000 * 117.49651 * 107.50023 * 18 17 8 37 37 H 1.08999 * 117.49881 * 252.51958 * 18 17 8 38 38 H 1.09006 * 109.57219 * 227.35616 * 19 6 5 39 39 H 1.08997 * 109.57617 * 347.72411 * 19 6 5 40 40 H 1.09000 * 109.22084 * 200.71521 * 20 19 6 41 41 H 1.08995 * 109.22298 * 81.36498 * 20 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8919 1.0280 0.0000 4 6 2.0464 -0.7295 -1.2692 5 6 3.4679 -0.4907 -1.4368 6 7 4.3286 -1.0173 -0.3677 7 6 5.5934 -1.5276 -0.9134 8 6 6.4870 -2.0063 0.2325 9 6 7.4353 -0.9768 0.7910 10 1 7.6102 -0.9249 1.8554 11 6 8.0794 -0.1010 -0.0570 12 7 8.1325 -0.3535 -1.3466 13 14 8.8767 1.4441 0.6258 14 1 8.6773 1.4956 2.0964 15 1 10.3305 1.4260 0.3233 16 1 8.2559 2.6394 0.0003 17 6 5.8984 -3.0275 1.2081 18 6 6.9628 -3.4608 0.1979 19 6 4.5620 0.1060 0.5260 20 6 3.7596 -0.1165 1.8290 21 16 2.1263 -0.8425 1.4659 22 8 1.2552 -0.5193 2.5410 23 8 2.3217 -2.2105 1.1352 24 1 -0.3634 -1.0276 -0.0021 25 1 -0.3634 0.5120 0.8910 26 1 -0.3633 0.5156 -0.8890 27 1 1.5117 -0.3571 -2.1430 28 1 1.8694 -1.8000 -1.1661 29 1 3.6279 0.5854 -1.5058 30 1 3.7810 -0.9389 -2.3798 31 1 6.0996 -0.7328 -1.4613 32 1 5.3890 -2.3599 -1.5869 33 1 8.5229 0.2958 -1.9523 34 1 6.1971 -2.9546 2.2538 35 1 4.8748 -3.3585 1.0333 36 1 7.9616 -3.6731 0.5792 37 1 6.6391 -4.0764 -0.6414 38 1 5.6249 0.1727 0.7586 39 1 4.2326 1.0281 0.0473 40 1 3.6230 0.8397 2.3341 41 1 4.3146 -0.7903 2.4817 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602822866.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:34 Heat of formation + Delta-G solvation = -46.272143 kcal Electronic energy + Delta-G solvation = -23039.465347 eV Core-core repulsion = 19854.369784 eV Total energy + Delta-G solvation = -3185.095563 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 287.134 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.24532 -37.96992 -37.54126 -36.78599 -35.34344 -34.22977 -32.07924 -30.41147 -27.78629 -26.32350 -24.58352 -23.39947 -22.89366 -21.75241 -20.68136 -19.33420 -18.29430 -18.07483 -17.03627 -16.65382 -16.58767 -16.27069 -15.74177 -15.46599 -15.10204 -14.74921 -14.50669 -14.30195 -14.04618 -13.69054 -13.52797 -13.24139 -13.05494 -12.85844 -12.78982 -12.67521 -12.59071 -12.43280 -12.36088 -12.16270 -11.99017 -11.82842 -11.49730 -11.24580 -11.06477 -10.96985 -10.81494 -10.48318 -10.04803 -9.17419 -8.12357 -6.15175 -0.70800 1.37905 1.46051 1.54380 2.13581 2.42011 2.88458 2.93913 3.11215 3.15658 3.67508 3.73746 3.80724 4.05472 4.07951 4.18149 4.32415 4.43378 4.54670 4.63911 4.73774 4.78466 4.79786 4.84176 4.91556 4.98972 5.02844 5.08209 5.15121 5.20236 5.23533 5.30067 5.39190 5.40423 5.61328 5.68160 5.89505 6.27186 6.37797 6.48322 6.84072 7.41239 8.89396 Molecular weight = 287.13amu Principal moments of inertia in cm(-1) A = 0.021306 B = 0.006537 C = 0.006282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1313.879701 B = 4282.250009 C = 4456.324952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.570 4.570 3 H 0.159 0.841 4 C -0.082 4.082 5 C 0.011 3.989 6 N -0.526 5.526 7 C 0.100 3.900 8 C 0.036 3.964 9 C -0.495 4.495 10 H 0.050 0.950 11 C 0.038 3.962 12 N -0.890 5.890 13 Si 0.930 3.070 14 H -0.270 1.270 15 H -0.289 1.289 16 H -0.270 1.270 17 C -0.180 4.180 18 C -0.208 4.208 19 C 0.025 3.975 20 C -0.580 4.580 21 S 2.429 3.571 22 O -0.999 6.999 23 O -0.961 6.961 24 H 0.061 0.939 25 H 0.074 0.926 26 H 0.106 0.894 27 H 0.120 0.880 28 H 0.076 0.924 29 H 0.065 0.935 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.040 0.960 33 H 0.264 0.736 34 H 0.066 0.934 35 H 0.087 0.913 36 H 0.064 0.936 37 H 0.070 0.930 38 H 0.104 0.896 39 H 0.081 0.919 40 H 0.148 0.852 41 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.437 5.636 -1.585 13.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.683 4.683 3 H 0.177 0.823 4 C -0.120 4.120 5 C -0.117 4.117 6 N -0.250 5.250 7 C -0.027 4.027 8 C 0.035 3.965 9 C -0.532 4.532 10 H 0.068 0.932 11 C -0.164 4.164 12 N -0.527 5.527 13 Si 0.756 3.244 14 H -0.194 1.194 15 H -0.216 1.216 16 H -0.195 1.195 17 C -0.217 4.217 18 C -0.246 4.246 19 C -0.104 4.104 20 C -0.712 4.712 21 S 2.615 3.385 22 O -0.996 6.996 23 O -0.958 6.958 24 H 0.080 0.920 25 H 0.093 0.907 26 H 0.124 0.876 27 H 0.138 0.862 28 H 0.095 0.905 29 H 0.083 0.917 30 H 0.088 0.912 31 H 0.088 0.912 32 H 0.058 0.942 33 H 0.073 0.927 34 H 0.085 0.915 35 H 0.105 0.895 36 H 0.083 0.917 37 H 0.088 0.912 38 H 0.121 0.879 39 H 0.099 0.901 40 H 0.166 0.834 41 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -12.968 4.597 -1.020 13.797 hybrid contribution 1.756 1.475 -0.279 2.310 sum -11.212 6.072 -1.299 12.817 Atomic orbital electron populations 1.21652 0.88794 1.03756 1.05502 1.30217 1.07465 1.14503 1.16096 0.82305 1.20352 0.94539 1.01266 0.95864 1.21304 0.94516 1.00004 0.95856 1.63125 1.16097 1.29590 1.16218 1.21638 0.86622 0.99221 0.95202 1.19030 0.95468 0.87125 0.94831 1.20743 1.23944 1.15842 0.92718 0.93200 1.25444 0.95551 1.00259 0.95114 1.70129 1.44381 1.34618 1.03588 0.85947 0.78198 0.81091 0.79187 1.19392 1.21559 1.19490 1.22719 0.96952 1.07520 0.94549 1.22985 0.97274 1.02912 1.01467 1.22756 1.04182 0.92618 0.90865 1.30598 1.19564 1.13675 1.07318 1.07490 0.77078 0.77031 0.76879 1.93455 1.65175 1.86173 1.54839 1.93471 1.85732 1.32319 1.84315 0.92019 0.90714 0.87563 0.86172 0.90511 0.91716 0.91168 0.91239 0.94151 0.92685 0.91531 0.89498 0.91740 0.91163 0.87851 0.90079 0.83427 0.86303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.44 8.88 71.98 0.64 -1.80 16 2 C -0.57 -11.85 2.58 31.36 0.08 -11.77 16 3 H 0.16 2.35 7.80 -2.50 -0.02 2.33 16 4 C -0.08 -1.78 4.87 28.96 0.14 -1.64 16 5 C 0.01 0.29 4.75 83.88 0.40 0.69 16 6 N -0.53 -18.62 3.14 -911.18 -2.86 -21.49 16 7 C 0.10 4.31 4.43 86.30 0.38 4.70 16 8 C 0.04 1.71 1.37 -52.90 -0.07 1.63 16 9 C -0.50 -24.92 6.74 25.60 0.17 -24.75 16 10 H 0.05 2.57 7.87 -2.91 -0.02 2.55 16 11 C 0.04 1.86 4.75 84.65 0.40 2.26 16 12 N -0.89 -45.60 11.18 21.45 0.24 -45.36 16 13 Si 0.93 39.09 29.57 68.60 2.03 41.12 16 14 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 15 H -0.29 -12.42 7.11 99.48 0.71 -11.72 16 16 H -0.27 -10.78 7.11 99.48 0.71 -10.07 16 17 C -0.18 -8.09 9.71 30.60 0.30 -7.79 16 18 C -0.21 -9.68 9.89 30.62 0.30 -9.37 16 19 C 0.03 0.84 5.03 87.14 0.44 1.27 16 20 C -0.58 -17.30 6.72 72.54 0.49 -16.82 16 21 S 2.43 73.02 4.50 -56.49 -0.25 72.77 16 22 O -1.00 -34.37 17.18 -127.28 -2.19 -36.55 16 23 O -0.96 -36.54 15.88 -127.28 -2.02 -38.56 16 24 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 25 H 0.07 1.34 7.71 -2.39 -0.02 1.32 16 26 H 0.11 1.24 8.14 -2.39 -0.02 1.22 16 27 H 0.12 1.79 8.10 -2.38 -0.02 1.77 16 28 H 0.08 1.99 7.22 -2.39 -0.02 1.97 16 29 H 0.06 1.50 6.49 -2.38 -0.02 1.49 16 30 H 0.07 1.93 7.58 -2.39 -0.02 1.91 16 31 H 0.07 3.24 5.47 -2.38 -0.01 3.23 16 32 H 0.04 1.75 7.84 -2.39 -0.02 1.73 16 33 H 0.26 12.82 8.32 -92.71 -0.77 12.05 16 34 H 0.07 2.94 8.14 -2.39 -0.02 2.92 16 35 H 0.09 3.93 8.14 -2.39 -0.02 3.92 16 36 H 0.06 3.06 8.14 -2.39 -0.02 3.04 16 37 H 0.07 3.11 8.03 -2.39 -0.02 3.09 16 38 H 0.10 4.20 4.38 -2.38 -0.01 4.19 16 39 H 0.08 2.12 6.27 -2.39 -0.01 2.11 16 40 H 0.15 3.32 8.14 -2.39 -0.02 3.30 16 41 H 0.12 3.97 8.14 -2.39 -0.02 3.95 16 Total: -1.00 -64.17 322.59 -0.38 -64.55 By element: Atomic # 1 Polarization: 25.89 SS G_CDS: 1.01 Total: 26.90 kcal Atomic # 6 Polarization: -67.06 SS G_CDS: 3.67 Total: -63.39 kcal Atomic # 7 Polarization: -64.22 SS G_CDS: -2.62 Total: -66.84 kcal Atomic # 8 Polarization: -70.91 SS G_CDS: -4.21 Total: -75.12 kcal Atomic # 14 Polarization: 39.09 SS G_CDS: 2.03 Total: 41.12 kcal Atomic # 16 Polarization: 73.02 SS G_CDS: -0.25 Total: 72.77 kcal Total: -64.17 -0.38 -64.55 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602822866.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.282 kcal (2) G-P(sol) polarization free energy of solvation -64.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.554 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds