Wall clock time and date at job start Tue Mar 31 2020 05:57:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09005 * 109.39446 * 2 1 4 4 C 1.55233 * 109.43411 * 119.88389 * 2 1 3 5 5 C 1.45116 * 110.06108 * 192.31445 * 4 2 1 6 6 N 1.47014 * 115.49587 * 296.56358 * 5 4 2 7 7 C 1.46905 * 110.99794 * 216.77872 * 6 5 4 8 8 C 1.52993 * 109.47004 * 180.55538 * 7 6 5 9 9 C 1.50698 * 115.54820 * 133.06288 * 8 7 6 10 10 H 1.08009 * 119.99939 * 144.83837 * 9 8 7 11 11 C 1.37872 * 120.00255 * 324.83695 * 9 8 7 12 12 N 1.31517 * 119.99874 * 348.43289 * 11 9 8 13 13 Si 1.86799 * 120.00303 * 168.43708 * 11 9 8 14 14 H 1.48504 * 109.47226 * 4.93748 * 13 11 9 15 15 H 1.48504 * 109.47468 * 124.93696 * 13 11 9 16 16 H 1.48501 * 109.47041 * 244.93558 * 13 11 9 17 17 C 1.53003 * 117.50142 * 347.35383 * 8 7 6 18 18 C 1.52997 * 59.99975 * 252.50852 * 17 8 7 19 19 C 1.45431 * 105.31690 * 96.57939 * 6 5 4 20 20 C 1.54642 * 108.87009 * 252.45664 * 19 6 5 21 21 S 1.79284 * 109.42948 * 240.12320 * 2 1 3 22 22 O 1.42092 * 107.93525 * 37.11623 * 21 2 1 23 23 O 1.42099 * 107.84179 * 267.81417 * 21 2 1 24 24 H 1.09003 * 109.47411 * 300.11719 * 1 2 3 25 25 H 1.08999 * 109.47679 * 60.11205 * 1 2 3 26 26 H 1.08998 * 109.47387 * 180.11629 * 1 2 3 27 27 H 1.08995 * 109.37377 * 72.13699 * 4 2 1 28 28 H 1.08997 * 109.37366 * 312.49420 * 4 2 1 29 29 H 1.08999 * 108.27571 * 58.12291 * 5 4 2 30 30 H 1.08998 * 108.27498 * 175.19488 * 5 4 2 31 31 H 1.08995 * 109.47334 * 300.56188 * 7 6 5 32 32 H 1.09001 * 109.46813 * 60.55790 * 7 6 5 33 33 H 0.97000 * 120.00008 * 185.36030 * 12 11 9 34 34 H 1.08995 * 117.49692 * 0.02562 * 17 8 7 35 35 H 1.09004 * 117.49872 * 145.01675 * 17 8 7 36 36 H 1.09003 * 117.49715 * 252.50752 * 18 17 8 37 37 H 1.09001 * 117.49769 * 107.49038 * 18 17 8 38 38 H 1.09000 * 109.57302 * 12.26637 * 19 6 5 39 39 H 1.08995 * 109.57780 * 132.51719 * 19 6 5 40 40 H 1.08993 * 109.22591 * 159.28040 * 20 19 6 41 41 H 1.08997 * 109.22228 * 278.63482 * 20 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8919 1.0282 0.0000 4 6 2.0464 -0.7294 1.2692 5 6 3.4679 -0.4904 1.4369 6 7 4.3286 -1.0171 0.3677 7 6 5.5935 -1.5273 0.9135 8 6 6.4662 -2.0530 -0.2279 9 6 7.9050 -1.6055 -0.2052 10 1 8.6843 -2.2753 -0.5378 11 6 8.2267 -0.3409 0.2402 12 7 7.2786 0.5508 0.4287 13 14 10.0091 0.1058 0.5759 14 1 10.8864 -1.0234 0.1752 15 1 10.3718 1.3157 -0.2052 16 1 10.1862 0.3804 2.0245 17 6 5.8050 -2.2382 -1.5952 18 6 6.1724 -3.4604 -0.7513 19 6 4.5621 0.1062 -0.5259 20 6 3.7596 -0.1162 -1.8290 21 16 2.1263 -0.8422 -1.4660 22 8 1.2553 -0.5191 -2.5411 23 8 2.3198 -2.2102 -1.1339 24 1 -0.3634 0.5157 0.8889 25 1 -0.3634 0.5121 -0.8909 26 1 -0.3634 -1.0276 0.0021 27 1 1.8693 -1.8001 1.1683 28 1 1.5117 -0.3570 2.1430 29 1 3.6279 0.5856 1.5056 30 1 3.7817 -0.9417 2.3782 31 1 6.1169 -0.7230 1.4303 32 1 5.3868 -2.3357 1.6148 33 1 7.5103 1.4622 0.6667 34 1 4.7484 -1.9850 -1.6816 35 1 6.4106 -2.0360 -2.4787 36 1 7.0197 -4.0623 -1.0796 37 1 5.3573 -4.0117 -0.2825 38 1 4.2326 1.0283 -0.0472 39 1 5.6251 0.1743 -0.7569 40 1 3.6230 0.8400 -2.3340 41 1 4.3147 -0.7899 -2.4817 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602822867.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:37 Heat of formation + Delta-G solvation = -11.608094 kcal Electronic energy + Delta-G solvation = -23208.255637 eV Core-core repulsion = 20024.663220 eV Total energy + Delta-G solvation = -3183.592417 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 287.134 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -38.92936 -36.43087 -36.16015 -35.41985 -33.87126 -32.34706 -30.91799 -29.14885 -25.87432 -24.60286 -23.50164 -22.12472 -21.32259 -20.37033 -18.74501 -18.03903 -16.91964 -16.42919 -15.62270 -15.32648 -15.02127 -14.85275 -14.15074 -14.09561 -13.65163 -13.55939 -13.10572 -12.81871 -12.69070 -12.19790 -12.00169 -11.72320 -11.58030 -11.44488 -11.39621 -11.17014 -11.10919 -10.96367 -10.73285 -10.53739 -10.33619 -10.24723 -10.05930 -9.96330 -9.54822 -9.19741 -9.05081 -8.65796 -8.13950 -7.66734 -6.13737 -4.22036 0.54364 3.16125 3.26368 3.31138 3.35159 4.09843 4.24596 4.28981 4.53559 4.74297 4.88743 4.93613 5.14688 5.39075 5.40866 5.53269 5.57953 5.61312 5.74025 5.84367 5.87546 6.00134 6.06264 6.21922 6.23381 6.39368 6.42918 6.58513 6.66250 6.84720 6.89702 7.08640 7.24116 7.32626 7.43129 7.53297 7.74215 7.93955 7.97363 8.42699 8.76233 9.35972 10.78050 Molecular weight = 287.13amu Principal moments of inertia in cm(-1) A = 0.026901 B = 0.006092 C = 0.005772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1040.607684 B = 4595.009040 C = 4849.951890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.591 4.591 3 H 0.127 0.873 4 C -0.083 4.083 5 C 0.019 3.981 6 N -0.516 5.516 7 C 0.088 3.912 8 C 0.043 3.957 9 C -0.474 4.474 10 H 0.062 0.938 11 C 0.064 3.936 12 N -0.888 5.888 13 Si 0.898 3.102 14 H -0.273 1.273 15 H -0.285 1.285 16 H -0.282 1.282 17 C -0.212 4.212 18 C -0.202 4.202 19 C 0.041 3.959 20 C -0.599 4.599 21 S 2.430 3.570 22 O -0.975 6.975 23 O -0.920 6.920 24 H 0.073 0.927 25 H 0.073 0.927 26 H 0.064 0.936 27 H 0.091 0.909 28 H 0.080 0.920 29 H 0.047 0.953 30 H 0.068 0.932 31 H 0.095 0.905 32 H 0.043 0.957 33 H 0.262 0.738 34 H 0.097 0.903 35 H 0.066 0.934 36 H 0.068 0.932 37 H 0.073 0.927 38 H 0.049 0.951 39 H 0.155 0.845 40 H 0.115 0.885 41 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.372 2.655 1.806 9.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.699 4.699 3 H 0.145 0.855 4 C -0.122 4.122 5 C -0.110 4.110 6 N -0.240 5.240 7 C -0.039 4.039 8 C 0.042 3.958 9 C -0.512 4.512 10 H 0.080 0.920 11 C -0.136 4.136 12 N -0.528 5.528 13 Si 0.726 3.274 14 H -0.198 1.198 15 H -0.211 1.211 16 H -0.208 1.208 17 C -0.250 4.250 18 C -0.239 4.239 19 C -0.089 4.089 20 C -0.730 4.730 21 S 2.612 3.388 22 O -0.972 6.972 23 O -0.917 6.917 24 H 0.092 0.908 25 H 0.092 0.908 26 H 0.083 0.917 27 H 0.109 0.891 28 H 0.098 0.902 29 H 0.065 0.935 30 H 0.086 0.914 31 H 0.112 0.888 32 H 0.061 0.939 33 H 0.073 0.927 34 H 0.115 0.885 35 H 0.084 0.916 36 H 0.086 0.914 37 H 0.092 0.908 38 H 0.067 0.933 39 H 0.173 0.827 40 H 0.133 0.867 41 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -10.045 1.758 1.247 10.274 hybrid contribution 1.630 1.640 0.828 2.456 sum -8.415 3.398 2.075 9.309 Atomic orbital electron populations 1.21509 0.90460 1.03275 1.03801 1.30408 1.06152 1.13780 1.19569 0.85484 1.20306 0.95942 1.01685 0.94247 1.21104 0.93654 0.99249 0.96954 1.63220 1.17098 1.28859 1.14840 1.21925 0.86265 0.99194 0.96476 1.19010 0.93746 0.92537 0.90492 1.20817 0.90617 0.98974 1.40770 0.91953 1.24955 0.97645 0.96282 0.94690 1.69594 1.31401 1.03070 1.48759 0.86440 0.84649 0.78241 0.78104 1.19767 1.21148 1.20829 1.23462 1.00720 1.03800 0.96994 1.22845 1.01401 0.92004 1.07652 1.22786 1.06356 0.90929 0.88805 1.31080 1.20084 1.12518 1.09313 1.07719 0.77650 0.77426 0.76012 1.93482 1.65021 1.85952 1.52731 1.93524 1.85357 1.29389 1.83464 0.90833 0.90841 0.91691 0.89070 0.90201 0.93457 0.91394 0.88782 0.93895 0.92689 0.88523 0.91555 0.91392 0.90806 0.93314 0.82725 0.86668 0.83740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.50 8.88 37.15 0.33 -1.17 16 2 C -0.59 -7.70 2.58 -25.55 -0.07 -7.77 16 3 H 0.13 1.41 7.81 -51.76 -0.40 1.01 16 4 C -0.08 -1.11 4.87 -29.25 -0.14 -1.25 16 5 C 0.02 0.29 4.76 -7.46 -0.04 0.26 16 6 N -0.52 -9.75 2.48 -239.35 -0.59 -10.35 16 7 C 0.09 1.91 4.45 -3.82 -0.02 1.89 16 8 C 0.04 1.01 1.56 -155.66 -0.24 0.77 16 9 C -0.47 -12.04 9.04 -34.44 -0.31 -12.35 16 10 H 0.06 1.62 7.84 -52.48 -0.41 1.20 16 11 C 0.06 1.57 5.06 -17.82 -0.09 1.48 16 12 N -0.89 -21.31 8.21 55.43 0.45 -20.86 16 13 Si 0.90 19.54 29.56 -169.99 -5.02 14.51 16 14 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 15 H -0.29 -6.24 7.11 56.52 0.40 -5.84 16 16 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 17 C -0.21 -4.77 7.48 -26.73 -0.20 -4.97 16 18 C -0.20 -4.51 9.95 -26.73 -0.27 -4.78 16 19 C 0.04 0.76 4.06 -3.75 -0.02 0.74 16 20 C -0.60 -9.93 5.77 38.02 0.22 -9.71 16 21 S 2.43 40.04 4.50 -107.50 -0.48 39.56 16 22 O -0.97 -17.98 17.18 -57.92 -1.00 -18.97 16 23 O -0.92 -18.12 15.10 -57.92 -0.87 -19.00 16 24 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 25 H 0.07 0.83 7.71 -51.93 -0.40 0.43 16 26 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 27 H 0.09 1.33 7.22 -51.93 -0.38 0.95 16 28 H 0.08 0.86 8.10 -51.93 -0.42 0.44 16 29 H 0.05 0.70 6.49 -51.93 -0.34 0.37 16 30 H 0.07 1.03 7.54 -51.93 -0.39 0.64 16 31 H 0.09 2.20 5.30 -51.93 -0.28 1.93 16 32 H 0.04 0.91 8.07 -51.93 -0.42 0.49 16 33 H 0.26 6.07 8.32 -40.82 -0.34 5.73 16 34 H 0.10 2.07 2.93 -51.93 -0.15 1.91 16 35 H 0.07 1.50 8.14 -51.93 -0.42 1.07 16 36 H 0.07 1.48 8.14 -51.93 -0.42 1.05 16 37 H 0.07 1.61 8.14 -51.93 -0.42 1.19 16 38 H 0.05 0.81 6.27 -51.93 -0.33 0.49 16 39 H 0.16 3.41 3.96 -51.93 -0.21 3.21 16 40 H 0.11 1.57 8.14 -51.93 -0.42 1.15 16 41 H 0.14 2.55 5.35 -51.93 -0.28 2.27 16 LS Contribution 308.57 15.07 4.65 4.65 Total: -1.00 -28.67 308.57 -9.77 -38.44 By element: Atomic # 1 Polarization: 14.94 SS G_CDS: -6.07 Total: 8.87 kcal Atomic # 6 Polarization: -36.02 SS G_CDS: -0.84 Total: -36.85 kcal Atomic # 7 Polarization: -31.07 SS G_CDS: -0.14 Total: -31.21 kcal Atomic # 8 Polarization: -36.10 SS G_CDS: -1.87 Total: -37.97 kcal Atomic # 14 Polarization: 19.54 SS G_CDS: -5.02 Total: 14.51 kcal Atomic # 16 Polarization: 40.04 SS G_CDS: -0.48 Total: 39.56 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -28.67 -9.77 -38.44 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602822867.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.831 kcal (2) G-P(sol) polarization free energy of solvation -28.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.439 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds