Wall clock time and date at job start Tue Mar 31 2020 05:57:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09005 * 109.39446 * 2 1 4 4 C 1.55233 * 109.43411 * 119.88389 * 2 1 3 5 5 C 1.45116 * 110.06108 * 192.31445 * 4 2 1 6 6 N 1.47014 * 115.49587 * 296.56358 * 5 4 2 7 7 C 1.46905 * 110.99794 * 216.77872 * 6 5 4 8 8 C 1.52993 * 109.47004 * 180.55538 * 7 6 5 9 9 C 1.50698 * 115.54820 * 133.06288 * 8 7 6 10 10 H 1.08009 * 119.99939 * 144.83837 * 9 8 7 11 11 C 1.37872 * 120.00255 * 324.83695 * 9 8 7 12 12 N 1.31517 * 119.99874 * 348.43289 * 11 9 8 13 13 Si 1.86799 * 120.00303 * 168.43708 * 11 9 8 14 14 H 1.48504 * 109.47226 * 4.93748 * 13 11 9 15 15 H 1.48504 * 109.47468 * 124.93696 * 13 11 9 16 16 H 1.48501 * 109.47041 * 244.93558 * 13 11 9 17 17 C 1.53003 * 117.50142 * 347.35383 * 8 7 6 18 18 C 1.52997 * 59.99975 * 252.50852 * 17 8 7 19 19 C 1.45431 * 105.31690 * 96.57939 * 6 5 4 20 20 C 1.54642 * 108.87009 * 252.45664 * 19 6 5 21 21 S 1.79284 * 109.42948 * 240.12320 * 2 1 3 22 22 O 1.42092 * 107.93525 * 37.11623 * 21 2 1 23 23 O 1.42099 * 107.84179 * 267.81417 * 21 2 1 24 24 H 1.09003 * 109.47411 * 300.11719 * 1 2 3 25 25 H 1.08999 * 109.47679 * 60.11205 * 1 2 3 26 26 H 1.08998 * 109.47387 * 180.11629 * 1 2 3 27 27 H 1.08995 * 109.37377 * 72.13699 * 4 2 1 28 28 H 1.08997 * 109.37366 * 312.49420 * 4 2 1 29 29 H 1.08999 * 108.27571 * 58.12291 * 5 4 2 30 30 H 1.08998 * 108.27498 * 175.19488 * 5 4 2 31 31 H 1.08995 * 109.47334 * 300.56188 * 7 6 5 32 32 H 1.09001 * 109.46813 * 60.55790 * 7 6 5 33 33 H 0.97000 * 120.00008 * 185.36030 * 12 11 9 34 34 H 1.08995 * 117.49692 * 0.02562 * 17 8 7 35 35 H 1.09004 * 117.49872 * 145.01675 * 17 8 7 36 36 H 1.09003 * 117.49715 * 252.50752 * 18 17 8 37 37 H 1.09001 * 117.49769 * 107.49038 * 18 17 8 38 38 H 1.09000 * 109.57302 * 12.26637 * 19 6 5 39 39 H 1.08995 * 109.57780 * 132.51719 * 19 6 5 40 40 H 1.08993 * 109.22591 * 159.28040 * 20 19 6 41 41 H 1.08997 * 109.22228 * 278.63482 * 20 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8919 1.0282 0.0000 4 6 2.0464 -0.7294 1.2692 5 6 3.4679 -0.4904 1.4369 6 7 4.3286 -1.0171 0.3677 7 6 5.5935 -1.5273 0.9135 8 6 6.4662 -2.0530 -0.2279 9 6 7.9050 -1.6055 -0.2052 10 1 8.6843 -2.2753 -0.5378 11 6 8.2267 -0.3409 0.2402 12 7 7.2786 0.5508 0.4287 13 14 10.0091 0.1058 0.5759 14 1 10.8864 -1.0234 0.1752 15 1 10.3718 1.3157 -0.2052 16 1 10.1862 0.3804 2.0245 17 6 5.8050 -2.2382 -1.5952 18 6 6.1724 -3.4604 -0.7513 19 6 4.5621 0.1062 -0.5259 20 6 3.7596 -0.1162 -1.8290 21 16 2.1263 -0.8422 -1.4660 22 8 1.2553 -0.5191 -2.5411 23 8 2.3198 -2.2102 -1.1339 24 1 -0.3634 0.5157 0.8889 25 1 -0.3634 0.5121 -0.8909 26 1 -0.3634 -1.0276 0.0021 27 1 1.8693 -1.8001 1.1683 28 1 1.5117 -0.3570 2.1430 29 1 3.6279 0.5856 1.5056 30 1 3.7817 -0.9417 2.3782 31 1 6.1169 -0.7230 1.4303 32 1 5.3868 -2.3357 1.6148 33 1 7.5103 1.4622 0.6667 34 1 4.7484 -1.9850 -1.6816 35 1 6.4106 -2.0360 -2.4787 36 1 7.0197 -4.0623 -1.0796 37 1 5.3573 -4.0117 -0.2825 38 1 4.2326 1.0283 -0.0472 39 1 5.6251 0.1743 -0.7569 40 1 3.6230 0.8400 -2.3340 41 1 4.3147 -0.7899 -2.4817 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602822867.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:36 Heat of formation + Delta-G solvation = -29.550102 kcal Electronic energy + Delta-G solvation = -23209.033661 eV Core-core repulsion = 20024.663220 eV Total energy + Delta-G solvation = -3184.370441 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 287.134 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.40310 -37.91059 -37.52971 -36.81235 -35.17179 -34.22433 -32.24694 -30.37545 -27.71474 -26.17633 -24.60643 -23.46095 -23.03690 -21.77970 -20.44319 -19.34203 -18.27321 -18.05584 -17.02985 -16.69703 -16.66633 -16.41842 -15.58586 -15.47533 -15.14887 -14.84806 -14.44761 -14.10905 -13.83004 -13.62540 -13.40725 -13.36518 -12.96784 -12.89476 -12.82852 -12.62400 -12.53472 -12.41024 -12.32848 -12.04768 -11.99264 -11.69721 -11.43836 -11.20070 -11.06210 -10.99934 -10.70878 -10.47233 -9.92178 -9.19424 -7.96821 -6.13961 -0.72124 1.41728 1.48069 1.56517 2.11197 2.43308 2.86692 2.95300 3.14898 3.24248 3.67191 3.74559 3.76629 4.05436 4.12369 4.23095 4.39954 4.44715 4.57436 4.70688 4.71059 4.80257 4.81726 4.85132 4.93034 5.02916 5.05333 5.09941 5.17069 5.20358 5.31704 5.33513 5.52087 5.61040 5.70845 5.75277 6.02960 6.26933 6.45171 6.60508 6.85433 7.44537 8.90146 Molecular weight = 287.13amu Principal moments of inertia in cm(-1) A = 0.026901 B = 0.006092 C = 0.005772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1040.607684 B = 4595.009040 C = 4849.951890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.569 4.569 3 H 0.156 0.844 4 C -0.081 4.081 5 C 0.013 3.987 6 N -0.524 5.524 7 C 0.097 3.903 8 C 0.031 3.969 9 C -0.508 4.508 10 H 0.044 0.956 11 C 0.037 3.963 12 N -0.885 5.885 13 Si 0.951 3.049 14 H -0.281 1.281 15 H -0.282 1.282 16 H -0.278 1.278 17 C -0.210 4.210 18 C -0.202 4.202 19 C 0.040 3.960 20 C -0.601 4.601 21 S 2.427 3.573 22 O -1.000 7.000 23 O -0.961 6.961 24 H 0.106 0.894 25 H 0.073 0.927 26 H 0.062 0.938 27 H 0.077 0.923 28 H 0.120 0.880 29 H 0.061 0.939 30 H 0.069 0.931 31 H 0.078 0.922 32 H 0.041 0.959 33 H 0.266 0.734 34 H 0.109 0.891 35 H 0.056 0.944 36 H 0.067 0.933 37 H 0.077 0.923 38 H 0.071 0.929 39 H 0.122 0.878 40 H 0.144 0.856 41 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.775 4.473 3.116 12.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.681 4.681 3 H 0.174 0.826 4 C -0.120 4.120 5 C -0.114 4.114 6 N -0.248 5.248 7 C -0.030 4.030 8 C 0.030 3.970 9 C -0.545 4.545 10 H 0.063 0.937 11 C -0.164 4.164 12 N -0.524 5.524 13 Si 0.778 3.222 14 H -0.206 1.206 15 H -0.208 1.208 16 H -0.204 1.204 17 C -0.248 4.248 18 C -0.239 4.239 19 C -0.089 4.089 20 C -0.732 4.732 21 S 2.614 3.386 22 O -0.997 6.997 23 O -0.958 6.958 24 H 0.125 0.875 25 H 0.092 0.908 26 H 0.081 0.919 27 H 0.095 0.905 28 H 0.138 0.862 29 H 0.080 0.920 30 H 0.088 0.912 31 H 0.096 0.904 32 H 0.059 0.941 33 H 0.076 0.924 34 H 0.127 0.873 35 H 0.074 0.926 36 H 0.085 0.915 37 H 0.096 0.904 38 H 0.089 0.911 39 H 0.140 0.860 40 H 0.162 0.838 41 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -11.446 3.560 2.517 12.248 hybrid contribution 2.041 1.121 0.448 2.371 sum -9.405 4.681 2.964 10.915 Atomic orbital electron populations 1.21658 0.88742 1.03797 1.05509 1.30196 1.07451 1.14392 1.16110 0.82580 1.20358 0.94719 1.01187 0.95728 1.21248 0.94339 0.99933 0.95920 1.63193 1.15912 1.29629 1.16070 1.21682 0.87280 0.98534 0.95530 1.19117 0.93539 0.92938 0.91419 1.20898 0.91282 0.99586 1.42757 0.93740 1.25440 1.00553 0.96073 0.94306 1.69719 1.32113 1.03024 1.47511 0.85624 0.81113 0.77511 0.77922 1.20625 1.20826 1.20359 1.23485 1.01218 1.03704 0.96386 1.22857 1.01450 0.91943 1.07691 1.22686 1.04794 0.91783 0.89680 1.31024 1.19967 1.13754 1.08477 1.07555 0.77074 0.77039 0.76945 1.93448 1.65180 1.86168 1.54882 1.93478 1.85732 1.32268 1.84324 0.87497 0.90764 0.91925 0.90486 0.86235 0.92039 0.91222 0.90441 0.94080 0.92408 0.87340 0.92571 0.91453 0.90440 0.91109 0.86007 0.83797 0.85507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.60 8.88 71.98 0.64 -1.96 16 2 C -0.57 -12.72 2.58 31.36 0.08 -12.64 16 3 H 0.16 2.66 7.81 -2.49 -0.02 2.64 16 4 C -0.08 -1.87 4.87 28.96 0.14 -1.73 16 5 C 0.01 0.38 4.76 83.89 0.40 0.78 16 6 N -0.52 -19.25 2.48 -911.16 -2.26 -21.51 16 7 C 0.10 4.22 4.45 86.30 0.38 4.61 16 8 C 0.03 1.47 1.56 -52.93 -0.08 1.38 16 9 C -0.51 -26.38 9.04 25.60 0.23 -26.15 16 10 H 0.04 2.39 7.84 -2.91 -0.02 2.37 16 11 C 0.04 1.79 5.06 84.65 0.43 2.22 16 12 N -0.88 -42.03 8.21 21.45 0.18 -41.85 16 13 Si 0.95 40.11 29.56 68.60 2.03 42.14 16 14 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 15 H -0.28 -11.71 7.11 99.48 0.71 -11.01 16 16 H -0.28 -11.47 7.11 99.48 0.71 -10.76 16 17 C -0.21 -9.70 7.48 30.59 0.23 -9.47 16 18 C -0.20 -9.27 9.95 30.59 0.30 -8.96 16 19 C 0.04 1.44 4.06 87.14 0.35 1.79 16 20 C -0.60 -19.33 5.77 72.54 0.42 -18.91 16 21 S 2.43 76.77 4.50 -56.49 -0.25 76.52 16 22 O -1.00 -35.81 17.18 -127.29 -2.19 -37.99 16 23 O -0.96 -37.69 15.10 -127.29 -1.92 -39.61 16 24 H 0.11 1.36 8.14 -2.39 -0.02 1.34 16 25 H 0.07 1.41 7.71 -2.39 -0.02 1.39 16 26 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 27 H 0.08 2.06 7.22 -2.39 -0.02 2.04 16 28 H 0.12 1.91 8.10 -2.39 -0.02 1.89 16 29 H 0.06 1.59 6.49 -2.39 -0.02 1.57 16 30 H 0.07 1.96 7.54 -2.39 -0.02 1.94 16 31 H 0.08 3.62 5.30 -2.39 -0.01 3.61 16 32 H 0.04 1.75 8.07 -2.39 -0.02 1.73 16 33 H 0.27 11.99 8.32 -92.71 -0.77 11.21 16 34 H 0.11 4.73 2.93 -2.39 -0.01 4.73 16 35 H 0.06 2.63 8.14 -2.39 -0.02 2.62 16 36 H 0.07 3.03 8.14 -2.39 -0.02 3.01 16 37 H 0.08 3.44 8.14 -2.39 -0.02 3.42 16 38 H 0.07 2.16 6.27 -2.39 -0.01 2.14 16 39 H 0.12 5.33 3.96 -2.39 -0.01 5.33 16 40 H 0.14 3.66 8.14 -2.39 -0.02 3.64 16 41 H 0.13 4.54 5.35 -2.39 -0.01 4.53 16 Total: -1.00 -62.36 308.57 0.13 -62.23 By element: Atomic # 1 Polarization: 28.11 SS G_CDS: 1.03 Total: 29.13 kcal Atomic # 6 Polarization: -72.57 SS G_CDS: 3.53 Total: -69.05 kcal Atomic # 7 Polarization: -61.28 SS G_CDS: -2.09 Total: -63.36 kcal Atomic # 8 Polarization: -73.49 SS G_CDS: -4.11 Total: -77.60 kcal Atomic # 14 Polarization: 40.11 SS G_CDS: 2.03 Total: 42.14 kcal Atomic # 16 Polarization: 76.77 SS G_CDS: -0.25 Total: 76.52 kcal Total: -62.36 0.13 -62.23 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602822867.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.676 kcal (2) G-P(sol) polarization free energy of solvation -62.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.226 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds