Wall clock time and date at job start Tue Mar 31 2020 06:31:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.45197 * 109.46946 * 2 1 4 4 C 1.34231 * 117.00048 * 179.97438 * 3 2 1 5 5 O 1.20827 * 119.99957 * 0.02562 * 4 3 2 6 6 C 1.50699 * 120.00013 * 180.02562 * 4 3 2 7 7 H 1.08990 * 109.34343 * 337.05101 * 6 4 3 8 8 C 1.53249 * 109.40327 * 96.85874 * 6 4 3 9 9 S 1.81902 * 108.50286 * 182.12258 * 8 6 4 10 10 C 1.81892 * 101.91287 * 308.68953 * 9 8 6 11 11 C 1.53246 * 108.50768 * 51.30942 * 10 9 8 12 12 N 1.46467 * 109.85816 * 297.99543 * 11 10 9 13 13 C 1.46897 * 111.00082 * 197.76520 * 12 11 10 14 14 C 1.53005 * 109.47298 * 74.98080 * 13 12 11 15 15 C 1.52999 * 109.47198 * 180.02562 * 14 13 12 16 16 C 1.50699 * 109.46986 * 179.97438 * 15 14 13 17 17 H 1.08005 * 119.99795 * 0.02562 * 16 15 14 18 18 C 1.37879 * 120.00132 * 179.97438 * 16 15 14 19 19 N 1.31512 * 120.00194 * 179.97438 * 18 16 15 20 20 Si 1.86802 * 119.99802 * 0.02562 * 18 16 15 21 21 H 1.48504 * 109.46615 * 269.99662 * 20 18 16 22 22 H 1.48506 * 109.47190 * 29.99350 * 20 18 16 23 23 H 1.48494 * 109.47079 * 149.99894 * 20 18 16 24 24 H 1.09002 * 109.47523 * 59.99674 * 1 2 3 25 25 H 1.09007 * 109.47013 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47181 * 299.99653 * 1 2 3 27 27 H 1.09003 * 109.47181 * 240.00884 * 2 1 3 28 28 H 1.08998 * 109.47042 * 120.00269 * 2 1 3 29 29 H 1.08992 * 109.63441 * 62.41183 * 8 6 4 30 30 H 1.09006 * 109.79269 * 301.91617 * 8 6 4 31 31 H 1.09004 * 109.63233 * 291.59908 * 10 9 8 32 32 H 1.09004 * 109.62817 * 171.01327 * 10 9 8 33 33 H 1.09005 * 109.40676 * 177.87702 * 11 10 9 34 34 H 1.08997 * 109.34237 * 58.07530 * 11 10 9 35 35 H 1.08999 * 109.47273 * 314.97985 * 13 12 11 36 36 H 1.08998 * 109.47333 * 194.98142 * 13 12 11 37 37 H 1.08999 * 109.47036 * 59.99760 * 14 13 12 38 38 H 1.09006 * 109.46928 * 299.99929 * 14 13 12 39 39 H 1.09006 * 109.46779 * 60.00280 * 15 14 13 40 40 H 1.08998 * 109.47370 * 300.00024 * 15 14 13 41 41 H 0.96993 * 119.99866 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3689 0.0000 4 6 3.3446 1.5449 0.0005 5 8 4.0807 0.5867 0.0005 6 6 3.9206 2.9375 0.0012 7 1 3.1836 3.6331 -0.3999 8 6 4.2742 3.3415 1.4365 9 16 4.9071 5.0468 1.4169 10 6 6.1871 4.9574 0.1276 11 6 5.5702 4.3308 -1.1276 12 7 5.1231 2.9672 -0.8346 13 6 4.9231 2.2014 -2.0721 14 6 6.2825 1.8091 -2.6545 15 6 6.0742 1.0121 -3.9438 16 6 7.4132 0.6262 -4.5177 17 1 8.3218 0.9197 -4.0130 18 6 7.4782 -0.1024 -5.6864 19 7 8.6467 -0.4388 -6.1875 20 14 5.9066 -0.6107 -6.5588 21 1 5.4641 -1.9340 -6.0504 22 1 4.8481 0.3983 -6.2998 23 1 6.1582 -0.7005 -8.0195 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8933 -0.5137 -0.8901 28 1 1.8933 -0.5139 0.8899 29 1 5.0394 2.6713 1.8277 30 1 3.3849 3.2883 2.0646 31 1 7.0152 4.3401 0.4759 32 1 6.5458 5.9606 -0.1024 33 1 6.3152 4.3047 -1.9229 34 1 4.7184 4.9301 -1.4489 35 1 4.3813 2.8125 -2.7940 36 1 4.3481 1.3016 -1.8538 37 1 6.8243 1.1980 -1.9326 38 1 6.8576 2.7090 -2.8730 39 1 5.5326 1.6237 -4.6655 40 1 5.4990 0.1122 -3.7258 41 1 8.6924 -0.9510 -7.0098 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000608832244.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:31:45 Heat of formation + Delta-G solvation = -83.274955 kcal Electronic energy + Delta-G solvation = -21390.933202 eV Core-core repulsion = 18204.233077 eV Total energy + Delta-G solvation = -3186.700125 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 287.134 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.97454 -38.39725 -36.51497 -34.20262 -32.54279 -31.97613 -31.58632 -29.90483 -26.41666 -25.43133 -23.43930 -22.78259 -21.96080 -20.28885 -20.02953 -18.20013 -17.19909 -16.84760 -16.56148 -15.93584 -15.64723 -15.23097 -14.74753 -14.35921 -14.17998 -13.90713 -13.68889 -13.44533 -13.17156 -13.00387 -12.66618 -12.38028 -12.22739 -12.04048 -11.89411 -11.83321 -11.60571 -11.42165 -11.05624 -10.83027 -10.61763 -10.43645 -9.96260 -9.87829 -9.67400 -9.61443 -9.17331 -8.52454 -8.48393 -7.91658 -6.02550 -4.00036 1.47126 1.96795 2.13514 2.56427 3.30997 3.37803 3.41130 3.58635 4.38126 4.46274 4.49851 4.64983 4.70276 4.74996 4.79468 4.98534 5.04384 5.04977 5.13170 5.31274 5.42064 5.46613 5.47725 5.52581 5.59839 5.68864 5.70348 5.80204 6.06672 6.26521 6.41527 6.47930 6.83605 6.96764 6.98881 7.34247 7.46802 7.63857 7.81359 8.56629 9.02964 9.60142 11.11080 Molecular weight = 287.13amu Principal moments of inertia in cm(-1) A = 0.013146 B = 0.005039 C = 0.003820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2129.422255 B = 5555.234644 C = 7328.023452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.060 3.940 3 O -0.360 6.360 4 C 0.465 3.535 5 O -0.473 6.473 6 C 0.099 3.901 7 H 0.083 0.917 8 C -0.068 4.068 9 S -0.256 6.256 10 C -0.077 4.077 11 C 0.056 3.944 12 N -0.533 5.533 13 C 0.044 3.956 14 C -0.089 4.089 15 C -0.012 4.012 16 C -0.516 4.516 17 H 0.072 0.928 18 C 0.066 3.934 19 N -0.904 5.904 20 Si 0.879 3.121 21 H -0.277 1.277 22 H -0.267 1.267 23 H -0.288 1.288 24 H 0.067 0.933 25 H 0.080 0.920 26 H 0.066 0.934 27 H 0.073 0.927 28 H 0.071 0.929 29 H 0.102 0.898 30 H 0.112 0.888 31 H 0.098 0.902 32 H 0.111 0.889 33 H 0.104 0.896 34 H 0.051 0.949 35 H 0.035 0.965 36 H 0.078 0.922 37 H 0.064 0.936 38 H 0.053 0.947 39 H 0.012 0.988 40 H 0.010 0.990 41 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.264 8.571 15.353 23.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.014 4.014 3 O -0.277 6.277 4 C 0.304 3.696 5 O -0.357 6.357 6 C -0.012 4.012 7 H 0.101 0.899 8 C -0.217 4.217 9 S -0.029 6.029 10 C -0.226 4.226 11 C -0.073 4.073 12 N -0.260 5.260 13 C -0.083 4.083 14 C -0.127 4.127 15 C -0.050 4.050 16 C -0.555 4.555 17 H 0.090 0.910 18 C -0.135 4.135 19 N -0.543 5.543 20 Si 0.707 3.293 21 H -0.203 1.203 22 H -0.192 1.192 23 H -0.214 1.214 24 H 0.086 0.914 25 H 0.099 0.901 26 H 0.085 0.915 27 H 0.092 0.908 28 H 0.089 0.911 29 H 0.121 0.879 30 H 0.130 0.870 31 H 0.116 0.884 32 H 0.130 0.870 33 H 0.122 0.878 34 H 0.069 0.931 35 H 0.053 0.947 36 H 0.096 0.904 37 H 0.083 0.917 38 H 0.072 0.928 39 H 0.031 0.969 40 H 0.028 0.972 41 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -14.925 8.838 16.114 23.675 hybrid contribution -0.934 -1.219 -1.714 2.301 sum -15.859 7.619 14.400 22.736 Atomic orbital electron populations 1.21805 0.92516 1.03056 1.03480 1.23082 0.95388 0.79926 1.03012 1.86498 1.24334 1.32804 1.84112 1.23304 0.80761 0.92265 0.73293 1.90752 1.60052 1.42402 1.42489 1.21422 0.92798 0.91083 0.95936 0.89933 1.23390 1.05152 0.96712 0.96441 1.86858 1.47794 1.14762 1.53464 1.23629 0.98714 1.04985 0.95243 1.22342 1.00537 0.87284 0.97104 1.61189 1.30225 1.14614 1.19927 1.22615 1.01068 0.96884 0.87690 1.21398 0.93311 1.00032 0.97981 1.19544 0.97904 0.94866 0.92723 1.21118 0.92245 1.34078 1.08010 0.90971 1.25024 0.95882 0.95511 0.97069 1.69913 1.23773 1.39310 1.21346 0.86790 0.84430 0.79390 0.78731 1.20306 1.19171 1.21377 0.91410 0.90129 0.91524 0.90841 0.91052 0.87933 0.86956 0.88360 0.87044 0.87833 0.93096 0.94676 0.90395 0.91692 0.92841 0.96934 0.97171 0.92780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 10.29 37.16 0.38 -0.72 16 2 C 0.06 0.62 6.19 37.16 0.23 0.85 16 3 O -0.36 -4.41 10.22 -39.26 -0.40 -4.81 16 4 C 0.46 6.51 5.46 36.01 0.20 6.71 16 5 O -0.47 -8.16 14.88 -18.75 -0.28 -8.44 16 6 C 0.10 1.23 2.38 -68.97 -0.16 1.07 16 7 H 0.08 0.95 7.91 -51.93 -0.41 0.54 16 8 C -0.07 -0.74 5.95 37.29 0.22 -0.51 16 9 S -0.26 -2.78 22.40 -107.50 -2.41 -5.18 16 10 C -0.08 -0.80 6.69 37.28 0.25 -0.55 16 11 C 0.06 0.67 5.24 -3.93 -0.02 0.65 16 12 N -0.53 -7.61 4.11 -228.43 -0.94 -8.55 16 13 C 0.04 0.74 4.52 -3.82 -0.02 0.72 16 14 C -0.09 -1.83 5.25 -26.73 -0.14 -1.97 16 15 C -0.01 -0.31 4.04 -27.88 -0.11 -0.42 16 16 C -0.52 -15.06 9.66 -34.44 -0.33 -15.39 16 17 H 0.07 2.26 7.99 -52.48 -0.42 1.84 16 18 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16 19 N -0.90 -28.33 13.96 55.43 0.77 -27.56 16 20 Si 0.88 22.13 27.47 -169.99 -4.67 17.46 16 21 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 22 H -0.27 -6.44 6.54 56.52 0.37 -6.07 16 23 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 24 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 25 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 26 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.07 0.82 8.13 -51.93 -0.42 0.40 16 28 H 0.07 0.70 8.13 -51.93 -0.42 0.28 16 29 H 0.10 1.20 8.14 -51.93 -0.42 0.78 16 30 H 0.11 1.00 8.14 -51.93 -0.42 0.58 16 31 H 0.10 1.08 8.14 -51.93 -0.42 0.66 16 32 H 0.11 0.94 8.14 -51.93 -0.42 0.52 16 33 H 0.10 1.29 6.44 -51.93 -0.33 0.96 16 34 H 0.05 0.57 7.91 -51.93 -0.41 0.15 16 35 H 0.03 0.57 8.01 -51.93 -0.42 0.15 16 36 H 0.08 1.43 4.91 -51.93 -0.26 1.17 16 37 H 0.06 1.43 8.14 -51.93 -0.42 1.00 16 38 H 0.05 1.05 6.70 -51.93 -0.35 0.70 16 39 H 0.01 0.30 7.20 -51.93 -0.37 -0.07 16 40 H 0.01 0.25 7.57 -51.93 -0.39 -0.14 16 41 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 LS Contribution 339.29 15.07 5.11 5.11 Total: -1.00 -32.79 339.29 -9.17 -41.96 By element: Atomic # 1 Polarization: 4.46 SS G_CDS: -6.76 Total: -2.29 kcal Atomic # 6 Polarization: -8.10 SS G_CDS: 0.39 Total: -7.71 kcal Atomic # 7 Polarization: -35.94 SS G_CDS: -0.17 Total: -36.10 kcal Atomic # 8 Polarization: -12.57 SS G_CDS: -0.68 Total: -13.25 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -4.67 Total: 17.46 kcal Atomic # 16 Polarization: -2.78 SS G_CDS: -2.41 Total: -5.18 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -32.79 -9.17 -41.96 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000608832244.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.316 kcal (2) G-P(sol) polarization free energy of solvation -32.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.959 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds